Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42107 * 109.46704 * 2 1 4 4 C 1.76195 * 103.00309 * 109.05560 * 2 1 3 5 5 C 1.38273 * 119.94064 * 95.00182 * 4 2 1 6 6 C 1.38104 * 120.09378 * 180.02562 * 5 4 2 7 7 C 1.38902 * 119.97799 * 0.27705 * 6 5 4 8 8 N 1.39940 * 120.05450 * 179.69749 * 7 6 5 9 9 C 1.34777 * 120.00120 * 33.18507 * 8 7 6 10 10 O 1.21596 * 119.99862 * 5.23345 * 9 8 7 11 11 N 1.34776 * 120.00342 * 185.23938 * 9 8 7 12 12 C 1.46501 * 119.99858 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46753 * 184.36354 * 12 11 9 14 14 C 1.50700 * 115.55164 * 62.05202 * 13 12 11 15 15 H 1.07998 * 120.00453 * 266.10832 * 14 13 12 16 16 C 1.37878 * 119.99900 * 86.10010 * 14 13 12 17 17 N 1.31519 * 120.00307 * 354.04135 * 16 14 13 18 18 Si 1.86797 * 120.00188 * 174.03803 * 16 14 13 19 19 H 1.48500 * 109.47048 * 89.99846 * 18 16 14 20 20 H 1.48493 * 109.47553 * 210.00286 * 18 16 14 21 21 H 1.48506 * 109.46953 * 330.00298 * 18 16 14 22 22 C 1.53000 * 117.50039 * 276.38262 * 13 12 11 23 23 C 1.53005 * 117.49884 * 207.72233 * 13 12 11 24 24 C 1.38804 * 119.88775 * 359.46741 * 7 6 5 25 25 C 1.38357 * 119.90376 * 0.51115 * 24 7 6 26 26 F 1.35104 * 119.98545 * 179.74294 * 25 24 7 27 27 H 1.08996 * 109.47217 * 310.93986 * 1 2 3 28 28 H 1.08999 * 109.47279 * 70.94305 * 1 2 3 29 29 H 1.08996 * 109.46672 * 190.94117 * 1 2 3 30 30 H 1.07997 * 119.95128 * 359.97438 * 5 4 2 31 31 H 1.07991 * 120.00997 * 180.02562 * 6 5 4 32 32 H 0.96996 * 120.00204 * 213.18048 * 8 7 6 33 33 H 0.97000 * 120.00147 * 359.97438 * 11 9 8 34 34 H 1.08998 * 109.47026 * 304.36028 * 12 11 9 35 35 H 1.09005 * 109.47601 * 64.36652 * 12 11 9 36 36 H 0.96996 * 120.00174 * 185.09828 * 17 16 14 37 37 H 1.08999 * 117.49781 * 359.97438 * 22 13 12 38 38 H 1.09000 * 117.50098 * 145.02252 * 22 13 12 39 39 H 1.08998 * 117.49836 * 214.98436 * 23 13 12 40 40 H 1.09003 * 117.49728 * 359.97438 * 23 13 12 41 41 H 1.08002 * 120.04647 * 180.25868 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2105 -0.5605 1.6227 5 6 2.4675 -1.9006 1.8464 6 6 2.7781 -2.3435 3.1171 7 6 2.8267 -1.4428 4.1734 8 7 3.1350 -1.8908 5.4628 9 6 3.9891 -2.9195 5.6326 10 8 4.5649 -3.3962 4.6735 11 7 4.2050 -3.4198 6.8653 12 6 5.1339 -4.5376 7.0497 13 6 5.1142 -4.9805 8.5141 14 6 3.7907 -5.4933 9.0204 15 1 3.1059 -4.8222 9.5174 16 6 3.4539 -6.8193 8.8489 17 7 4.2325 -7.6095 8.1423 18 14 1.8919 -7.4936 9.6201 19 1 0.7635 -7.3410 8.6669 20 1 2.0786 -8.9315 9.9402 21 1 1.5918 -6.7440 10.8664 22 6 5.9955 -4.2080 9.4978 23 6 6.3831 -5.6269 9.0738 24 6 2.5738 -0.0969 3.9470 25 6 2.2635 0.3417 2.6719 26 9 2.0119 1.6505 2.4507 27 1 -0.3633 0.6734 0.7763 28 1 -0.3634 0.3355 -0.9713 29 1 -0.3632 -1.0090 0.1950 30 1 2.4246 -2.6020 1.0263 31 1 2.9790 -3.3903 3.2901 32 1 2.7341 -1.4610 6.2344 33 1 3.7460 -3.0393 7.6304 34 1 4.8315 -5.3699 6.4143 35 1 6.1414 -4.2213 6.7793 36 1 3.9595 -8.5221 7.9594 37 1 6.5896 -3.3845 9.1016 38 1 5.6181 -4.0711 10.5112 39 1 6.2605 -6.4228 9.8083 40 1 7.2317 -5.7369 8.3986 41 1 2.6150 0.6063 4.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432141391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -52.386093 kcal Electronic energy + Delta-G solvation = -26400.168206 eV Core-core repulsion = 22322.560693 eV Total energy + Delta-G solvation = -4077.607513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.05980 -40.51289 -38.53903 -36.86304 -35.84492 -34.66666 -33.55135 -32.06145 -30.86044 -29.80836 -28.95659 -26.39359 -25.29989 -23.24293 -23.02285 -21.30821 -20.55196 -19.54251 -18.53509 -18.20496 -17.94355 -16.60705 -16.42563 -16.21595 -15.88459 -15.63437 -15.08293 -14.79266 -14.73547 -14.57483 -14.23002 -14.15975 -13.99108 -13.52661 -13.30243 -13.09105 -12.91176 -12.76809 -12.58999 -12.01650 -11.92168 -11.75269 -11.67118 -11.07523 -11.03260 -10.62128 -10.57030 -10.46419 -10.34574 -9.94449 -9.66151 -9.10000 -9.00376 -8.77218 -8.58458 -8.53781 -8.32076 -8.12297 -6.16814 -4.26190 0.62690 1.06581 1.63595 2.43010 2.70850 3.17483 3.18616 3.27376 3.28650 3.59125 3.72865 4.12848 4.26829 4.44331 4.57872 4.91871 4.95794 5.01436 5.11053 5.12477 5.22342 5.32046 5.56514 5.70255 5.75787 5.90278 5.99063 6.11928 6.22664 6.33553 6.36008 6.42562 6.59308 6.66322 6.82124 6.98098 7.03039 7.18482 7.31371 7.41131 7.71981 8.23103 8.26941 8.74283 8.79919 9.41258 10.90846 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002329 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.026183 B =12019.729728 C =12571.859785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.501 4.501 2 S 1.342 4.658 3 O -0.850 6.850 4 C -0.530 4.530 5 C 0.004 3.996 6 C -0.151 4.151 7 C 0.250 3.750 8 N -0.692 5.692 9 C 0.696 3.304 10 O -0.578 6.578 11 N -0.708 5.708 12 C 0.179 3.821 13 C 0.026 3.974 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.075 3.925 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.212 4.212 23 C -0.145 4.145 24 C -0.212 4.212 25 C 0.182 3.818 26 F -0.123 7.123 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.409 0.591 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 10.125 -13.291 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.537 4.463 3 O -0.845 6.845 4 C -0.627 4.627 5 C -0.016 4.016 6 C -0.172 4.172 7 C 0.151 3.849 8 N -0.338 5.338 9 C 0.397 3.603 10 O -0.456 6.456 11 N -0.359 5.359 12 C 0.056 3.944 13 C 0.025 3.975 14 C -0.540 4.540 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.509 5.509 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.249 4.249 23 C -0.183 4.183 24 C -0.235 4.235 25 C 0.161 3.839 26 F -0.101 7.101 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.245 0.755 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.936 9.677 -14.770 18.335 hybrid contribution -2.167 1.400 3.086 4.022 sum -7.103 11.077 -11.685 17.598 Atomic orbital electron populations 1.27793 1.22885 1.07928 1.07132 1.69501 0.85929 0.99657 0.91177 1.93153 1.72895 1.37103 1.81395 1.27666 1.19234 1.00216 1.15619 1.20601 0.91623 0.92381 0.96998 1.21485 1.02348 1.01430 0.91960 1.17365 0.91550 0.90959 0.85021 1.42901 1.48061 1.36170 1.06708 1.16009 0.79713 0.79658 0.84943 1.90916 1.52836 1.62323 1.39493 1.45197 1.47996 1.36567 1.06114 1.20977 0.88831 0.86145 0.98436 1.19035 0.92237 0.97979 0.88262 1.20307 1.00912 0.93916 1.38854 0.92265 1.24982 0.96493 0.96758 0.94730 1.69966 1.36216 1.07416 1.37259 0.86632 0.83355 0.78439 0.79833 1.20661 1.21090 1.19850 1.23057 1.06564 0.94626 1.00651 1.22486 0.98594 0.94035 1.03161 1.20785 1.10861 0.95041 0.96803 1.17069 0.95914 0.77899 0.93059 1.91603 1.90792 1.32487 1.95256 0.90118 0.87736 0.86985 0.83349 0.82970 0.75509 0.76720 0.90577 0.94518 0.92749 0.91617 0.90311 0.89683 0.91563 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.41 10.70 101.05 1.08 -2.33 16 2 S 1.34 10.82 14.09 -107.50 -1.51 9.30 16 3 O -0.85 -12.74 15.98 -35.23 -0.56 -13.30 16 4 C -0.53 -5.75 5.60 -39.48 -0.22 -5.97 16 5 C 0.00 0.04 9.74 -39.62 -0.39 -0.35 16 6 C -0.15 -1.96 8.66 -39.38 -0.34 -2.30 16 7 C 0.25 3.34 6.28 -83.70 -0.53 2.82 16 8 N -0.69 -9.23 5.35 -14.23 -0.08 -9.31 16 9 C 0.70 12.04 8.30 -86.92 -0.72 11.32 16 10 O -0.58 -11.81 14.02 5.28 0.07 -11.73 16 11 N -0.71 -12.51 5.43 -65.22 -0.35 -12.86 16 12 C 0.18 3.77 5.51 -4.04 -0.02 3.75 16 13 C 0.03 0.57 1.42 -155.66 -0.22 0.35 16 14 C -0.50 -12.25 8.57 -34.44 -0.30 -12.55 16 15 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 16 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 17 N -0.87 -23.22 12.87 55.43 0.71 -22.51 16 18 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.21 -4.15 9.95 -26.69 -0.27 -4.41 16 23 C -0.14 -3.14 9.37 -26.69 -0.25 -3.39 16 24 C -0.21 -2.68 9.94 -39.33 -0.39 -3.07 16 25 C 0.18 2.46 7.16 -39.45 -0.28 2.17 16 26 F -0.12 -1.91 15.30 2.25 0.03 -1.88 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.15 2.22 6.40 -52.49 -0.34 1.89 16 32 H 0.41 4.15 8.83 -40.82 -0.36 3.79 16 33 H 0.40 6.29 8.38 -40.82 -0.34 5.95 16 34 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -35.18 369.60 -9.31 -44.49 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.23 Total: 9.64 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.94 Total: -12.14 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.28 Total: -44.68 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.49 Total: -25.04 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 10.82 SS G_CDS: -1.51 Total: 9.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.18 -9.31 -44.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432141391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.894 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds