Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42107 * 109.46704 * 2 1 4 4 C 1.76195 * 103.00309 * 109.05560 * 2 1 3 5 5 C 1.38273 * 119.94064 * 95.00182 * 4 2 1 6 6 C 1.38104 * 120.09378 * 180.02562 * 5 4 2 7 7 C 1.38902 * 119.97799 * 0.27705 * 6 5 4 8 8 N 1.39940 * 120.05450 * 179.69749 * 7 6 5 9 9 C 1.34777 * 120.00120 * 33.18507 * 8 7 6 10 10 O 1.21596 * 119.99862 * 5.23345 * 9 8 7 11 11 N 1.34776 * 120.00342 * 185.23938 * 9 8 7 12 12 C 1.46501 * 119.99858 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46753 * 184.36354 * 12 11 9 14 14 C 1.50700 * 115.55164 * 62.05202 * 13 12 11 15 15 H 1.07998 * 120.00453 * 266.10832 * 14 13 12 16 16 C 1.37878 * 119.99900 * 86.10010 * 14 13 12 17 17 N 1.31519 * 120.00307 * 354.04135 * 16 14 13 18 18 Si 1.86797 * 120.00188 * 174.03803 * 16 14 13 19 19 H 1.48500 * 109.47048 * 89.99846 * 18 16 14 20 20 H 1.48493 * 109.47553 * 210.00286 * 18 16 14 21 21 H 1.48506 * 109.46953 * 330.00298 * 18 16 14 22 22 C 1.53000 * 117.50039 * 276.38262 * 13 12 11 23 23 C 1.53005 * 117.49884 * 207.72233 * 13 12 11 24 24 C 1.38804 * 119.88775 * 359.46741 * 7 6 5 25 25 C 1.38357 * 119.90376 * 0.51115 * 24 7 6 26 26 F 1.35104 * 119.98545 * 179.74294 * 25 24 7 27 27 H 1.08996 * 109.47217 * 310.93986 * 1 2 3 28 28 H 1.08999 * 109.47279 * 70.94305 * 1 2 3 29 29 H 1.08996 * 109.46672 * 190.94117 * 1 2 3 30 30 H 1.07997 * 119.95128 * 359.97438 * 5 4 2 31 31 H 1.07991 * 120.00997 * 180.02562 * 6 5 4 32 32 H 0.96996 * 120.00204 * 213.18048 * 8 7 6 33 33 H 0.97000 * 120.00147 * 359.97438 * 11 9 8 34 34 H 1.08998 * 109.47026 * 304.36028 * 12 11 9 35 35 H 1.09005 * 109.47601 * 64.36652 * 12 11 9 36 36 H 0.96996 * 120.00174 * 185.09828 * 17 16 14 37 37 H 1.08999 * 117.49781 * 359.97438 * 22 13 12 38 38 H 1.09000 * 117.50098 * 145.02252 * 22 13 12 39 39 H 1.08998 * 117.49836 * 214.98436 * 23 13 12 40 40 H 1.09003 * 117.49728 * 359.97438 * 23 13 12 41 41 H 1.08002 * 120.04647 * 180.25868 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2105 -0.5605 1.6227 5 6 2.4675 -1.9006 1.8464 6 6 2.7781 -2.3435 3.1171 7 6 2.8267 -1.4428 4.1734 8 7 3.1350 -1.8908 5.4628 9 6 3.9891 -2.9195 5.6326 10 8 4.5649 -3.3962 4.6735 11 7 4.2050 -3.4198 6.8653 12 6 5.1339 -4.5376 7.0497 13 6 5.1142 -4.9805 8.5141 14 6 3.7907 -5.4933 9.0204 15 1 3.1059 -4.8222 9.5174 16 6 3.4539 -6.8193 8.8489 17 7 4.2325 -7.6095 8.1423 18 14 1.8919 -7.4936 9.6201 19 1 0.7635 -7.3410 8.6669 20 1 2.0786 -8.9315 9.9402 21 1 1.5918 -6.7440 10.8664 22 6 5.9955 -4.2080 9.4978 23 6 6.3831 -5.6269 9.0738 24 6 2.5738 -0.0969 3.9470 25 6 2.2635 0.3417 2.6719 26 9 2.0119 1.6505 2.4507 27 1 -0.3633 0.6734 0.7763 28 1 -0.3634 0.3355 -0.9713 29 1 -0.3632 -1.0090 0.1950 30 1 2.4246 -2.6020 1.0263 31 1 2.9790 -3.3903 3.2901 32 1 2.7341 -1.4610 6.2344 33 1 3.7460 -3.0393 7.6304 34 1 4.8315 -5.3699 6.4143 35 1 6.1414 -4.2213 6.7793 36 1 3.9595 -8.5221 7.9594 37 1 6.5896 -3.3845 9.1016 38 1 5.6181 -4.0711 10.5112 39 1 6.2605 -6.4228 9.8083 40 1 7.2317 -5.7369 8.3986 41 1 2.6150 0.6063 4.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432141391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -77.281253 kcal Electronic energy + Delta-G solvation = -26401.247741 eV Core-core repulsion = 22322.560693 eV Total energy + Delta-G solvation = -4078.687048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.15011 -41.73977 -39.71022 -38.48256 -36.81884 -35.85082 -35.05668 -33.95546 -31.82118 -30.82365 -29.57625 -28.04370 -27.06691 -24.23334 -24.09344 -22.94985 -21.86965 -21.25114 -19.63231 -19.38632 -18.96474 -18.01437 -17.50267 -17.33961 -16.98319 -16.87300 -16.60433 -16.37405 -15.94448 -15.74995 -15.60000 -15.07059 -14.98871 -14.75294 -14.50877 -14.35137 -14.02240 -13.85924 -13.54156 -13.48082 -13.39353 -12.90458 -12.83935 -12.73510 -12.67987 -12.35801 -12.03073 -11.65637 -11.58004 -11.43539 -11.17271 -10.86355 -10.44585 -10.15208 -10.00705 -9.87832 -9.57870 -9.22241 -8.08958 -6.21943 -0.30495 0.11093 0.90262 1.42115 1.45187 1.46462 1.53261 1.73839 1.99008 2.42798 2.51311 2.94382 3.05537 3.19534 3.27915 3.56038 3.70499 4.00066 4.19756 4.23883 4.32564 4.36438 4.54547 4.56142 4.62447 4.67068 4.72340 4.90464 4.97856 5.01816 5.04524 5.12536 5.19181 5.29077 5.33500 5.54190 5.60661 5.66856 5.78924 5.82260 5.93468 6.37203 6.84621 6.98257 7.43947 7.47961 8.98357 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002329 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.026183 B =12019.729728 C =12571.859785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.409 4.591 3 O -0.918 6.918 4 C -0.528 4.528 5 C 0.022 3.978 6 C -0.167 4.167 7 C 0.228 3.772 8 N -0.677 5.677 9 C 0.699 3.301 10 O -0.612 6.612 11 N -0.704 5.704 12 C 0.197 3.803 13 C 0.006 3.994 14 C -0.505 4.505 15 H 0.063 0.937 16 C 0.027 3.973 17 N -0.905 5.905 18 Si 0.947 3.053 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.266 1.266 22 C -0.179 4.179 23 C -0.157 4.157 24 C -0.208 4.208 25 C 0.150 3.850 26 F -0.141 7.141 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.201 0.799 31 H 0.135 0.865 32 H 0.424 0.576 33 H 0.409 0.591 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 10.727 -13.972 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.606 4.394 3 O -0.914 6.914 4 C -0.625 4.625 5 C 0.002 3.998 6 C -0.189 4.189 7 C 0.131 3.869 8 N -0.325 5.325 9 C 0.399 3.601 10 O -0.492 6.492 11 N -0.356 5.356 12 C 0.073 3.927 13 C 0.005 3.995 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.773 3.227 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.216 4.216 23 C -0.196 4.196 24 C -0.231 4.231 25 C 0.129 3.871 26 F -0.119 7.119 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.218 0.782 31 H 0.153 0.847 32 H 0.263 0.737 33 H 0.245 0.755 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.261 10.331 -15.414 19.584 hybrid contribution -1.837 1.232 3.205 3.895 sum -8.099 11.563 -12.209 18.664 Atomic orbital electron populations 1.27773 1.20787 1.09491 1.07553 1.68701 0.86013 0.96550 0.88169 1.93029 1.75643 1.40622 1.82121 1.28100 1.17905 1.00249 1.16224 1.21128 0.88844 0.92637 0.97146 1.21590 1.03217 1.00663 0.93434 1.17503 0.92999 0.91421 0.85001 1.42584 1.47171 1.35033 1.07666 1.16042 0.79818 0.80052 0.84164 1.90891 1.54256 1.63607 1.40420 1.44937 1.47888 1.35935 1.06846 1.20514 0.89399 0.85852 0.96978 1.19060 0.91685 0.99580 0.89202 1.20632 1.01789 0.93901 1.37905 0.91908 1.25653 0.99070 0.97347 0.95295 1.70086 1.37786 1.07458 1.38916 0.85736 0.80350 0.77412 0.79194 1.20523 1.21684 1.19091 1.23038 1.04555 0.93847 1.00148 1.22428 0.98885 0.95012 1.03251 1.20835 1.10193 0.94907 0.97150 1.17477 0.97635 0.77705 0.94266 1.91560 1.91190 1.33760 1.95388 0.92346 0.85770 0.83849 0.78173 0.84694 0.73705 0.75490 0.94580 0.94321 0.93178 0.89201 0.89737 0.91858 0.90917 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.25 10.70 113.37 1.21 -4.04 16 2 S 1.41 19.68 14.09 -56.49 -0.80 18.89 16 3 O -0.92 -26.99 15.98 -148.98 -2.38 -29.37 16 4 C -0.53 -10.48 5.60 22.34 0.13 -10.35 16 5 C 0.02 0.36 9.74 22.25 0.22 0.58 16 6 C -0.17 -4.16 8.66 22.40 0.19 -3.97 16 7 C 0.23 5.94 6.28 38.14 0.24 6.18 16 8 N -0.68 -17.55 5.35 -317.19 -1.70 -19.25 16 9 C 0.70 23.98 8.30 179.05 1.49 25.47 16 10 O -0.61 -25.22 14.02 -4.02 -0.06 -25.28 16 11 N -0.70 -24.54 5.43 -478.52 -2.60 -27.14 16 12 C 0.20 8.34 5.51 86.38 0.48 8.82 16 13 C 0.01 0.24 1.42 -52.93 -0.08 0.17 16 14 C -0.50 -24.39 8.57 25.60 0.22 -24.17 16 15 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 16 C 0.03 1.39 5.39 84.65 0.46 1.85 16 17 N -0.91 -49.09 12.87 21.45 0.28 -48.82 16 18 Si 0.95 40.56 29.54 68.60 2.03 42.58 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 C -0.18 -6.66 9.95 30.62 0.30 -6.36 16 23 C -0.16 -6.81 9.37 30.62 0.29 -6.52 16 24 C -0.21 -5.11 9.94 22.43 0.22 -4.89 16 25 C 0.15 3.95 7.16 22.36 0.16 4.11 16 26 F -0.14 -4.39 15.30 44.97 0.69 -3.70 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.14 3.91 6.40 -2.92 -0.02 3.89 16 32 H 0.42 8.09 8.83 -92.71 -0.82 7.27 16 33 H 0.41 12.41 8.38 -92.71 -0.78 11.64 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.60 8.11 -2.38 -0.02 1.58 16 36 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 37 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.06 2.98 8.14 -2.39 -0.02 2.97 16 40 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -78.52 369.60 0.48 -78.04 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.51 Total: 27.17 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.53 Total: -13.14 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.02 Total: -95.20 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -2.44 Total: -54.65 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.69 Total: -3.70 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 19.68 SS G_CDS: -0.80 Total: 18.89 kcal Total: -78.52 0.48 -78.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432141391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.762 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds