Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.46750 * 274.99809 * 3 2 1 5 5 H 1.48497 * 109.47259 * 34.99376 * 3 2 1 6 6 H 1.48499 * 109.47333 * 155.00126 * 3 2 1 7 7 C 1.39157 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99690 * 338.37088 * 7 2 1 9 9 N 1.36685 * 120.00104 * 158.37637 * 7 2 1 10 10 C 1.34779 * 120.00181 * 317.88736 * 9 7 2 11 11 O 1.21648 * 119.99259 * 3.73915 * 10 9 7 12 12 C 1.47311 * 120.00205 * 183.74000 * 10 9 7 13 13 C 1.36776 * 126.83727 * 173.91977 * 12 10 9 14 14 C 1.42136 * 103.78666 * 180.02562 * 13 12 10 15 15 C 1.48381 * 126.83794 * 179.97438 * 14 13 12 16 16 C 1.39402 * 120.23893 * 0.02562 * 15 14 13 17 17 C 1.37652 * 120.22694 * 179.82888 * 16 15 14 18 18 C 1.39443 * 120.39870 * 359.95929 * 17 16 15 19 19 C 1.39035 * 119.06156 * 0.37306 * 18 17 16 20 20 C 1.37493 * 120.90594 * 359.47544 * 19 18 17 21 21 C 1.51671 * 107.02579 * 179.45901 * 19 18 17 22 22 C 1.54705 * 101.94571 * 344.57440 * 21 19 18 23 23 O 1.36114 * 129.74749 * 181.02366 * 18 17 16 24 24 N 1.31013 * 106.32595 * 0.26064 * 14 13 12 25 25 O 1.20871 * 111.82175 * 359.53259 * 24 14 13 26 26 C 1.46496 * 120.00168 * 137.89435 * 9 7 2 27 27 C 1.53004 * 117.50011 * 2.01936 * 26 9 7 28 28 C 1.53005 * 60.00169 * 252.51174 * 27 26 9 29 29 H 0.96998 * 119.99624 * 0.02562 * 1 2 3 30 30 H 1.08004 * 128.10772 * 0.02562 * 13 12 10 31 31 H 1.08007 * 119.88445 * 359.81358 * 16 15 14 32 32 H 1.08002 * 119.79998 * 179.97438 * 17 16 15 33 33 H 1.08008 * 120.05373 * 180.31636 * 20 19 18 34 34 H 1.08997 * 110.94137 * 102.74498 * 21 19 18 35 35 H 1.08992 * 110.94132 * 226.40450 * 21 19 18 36 36 H 1.09000 * 110.74312 * 143.68566 * 22 21 19 37 37 H 1.08995 * 110.74756 * 267.02502 * 22 21 19 38 38 H 1.09000 * 115.55288 * 147.73033 * 26 9 7 39 39 H 1.09000 * 117.49486 * 359.97438 * 27 26 9 40 40 H 1.08998 * 117.49966 * 145.02439 * 27 26 9 41 41 H 1.08999 * 117.49974 * 252.51221 * 28 27 26 42 42 H 1.08998 * 117.51732 * 107.47851 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3888 2.1074 -1.3948 5 1 1.5012 2.6199 0.8029 6 1 3.5934 1.4121 0.5917 7 6 2.0088 -1.2051 -0.0005 8 1 1.5259 -2.1076 0.3438 9 7 3.3035 -1.2465 -0.4368 10 6 3.6657 -0.5601 -1.5387 11 8 2.8571 0.1501 -2.1058 12 6 5.0405 -0.6701 -2.0563 13 6 5.5249 -0.1338 -3.2175 14 6 6.8882 -0.5356 -3.2334 15 6 7.8948 -0.2257 -4.2786 16 6 7.5400 0.5352 -5.3914 17 6 8.4750 0.8254 -6.3591 18 6 9.7847 0.3629 -6.2361 19 6 10.1297 -0.4013 -5.1270 20 6 9.2027 -0.6932 -4.1544 21 6 11.5949 -0.7641 -5.2760 22 6 11.8541 -0.4436 -6.7672 23 8 10.8543 0.5493 -7.0571 24 7 7.0774 -1.2393 -2.1447 25 8 6.0706 -1.3190 -1.4805 26 6 4.2976 -2.0371 0.2933 27 6 3.8145 -2.8315 1.5084 28 6 4.6680 -1.5769 1.7048 29 1 -0.4849 0.8401 -0.0004 30 1 4.9955 0.4567 -3.9507 31 1 6.5280 0.8980 -5.4948 32 1 8.1925 1.4152 -7.2186 33 1 9.4870 -1.2838 -3.2960 34 1 12.2173 -0.1445 -4.6305 35 1 11.7569 -1.8223 -5.0712 36 1 12.8554 -0.0361 -6.9060 37 1 11.7080 -1.3304 -7.3838 38 1 5.0867 -2.4783 -0.3155 39 1 2.7571 -2.7656 1.7648 40 1 4.2857 -3.7957 1.6991 41 1 5.7008 -1.7158 2.0245 42 1 4.1724 -0.6858 2.0899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434102562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 76.773163 kcal Electronic energy + Delta-G solvation = -28628.142250 eV Core-core repulsion = 24544.151856 eV Total energy + Delta-G solvation = -4083.990394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.55989 -41.32911 -39.15275 -37.93883 -36.57675 -33.98696 -33.16542 -33.01376 -31.99850 -31.27465 -29.85105 -29.49283 -25.83996 -24.40448 -23.60580 -23.00683 -22.37859 -21.84506 -21.51695 -20.82480 -19.76834 -18.19179 -17.70711 -17.41525 -16.84433 -16.56939 -16.38891 -16.04268 -15.39155 -15.12997 -14.39103 -14.30207 -14.04104 -13.84146 -13.55895 -13.45628 -13.41580 -13.36766 -13.14826 -12.95551 -12.62878 -12.22502 -12.09225 -11.79116 -11.57666 -11.44105 -11.26823 -10.97681 -10.81173 -10.47533 -10.28912 -10.22688 -10.09373 -9.77147 -9.29120 -9.16623 -8.97858 -8.68195 -8.13579 -7.73075 -6.44339 -4.16035 0.70084 1.06988 1.35905 2.43521 2.93849 3.10874 3.38220 3.39750 3.55039 3.58487 3.84043 3.91676 4.05467 4.13037 4.23781 4.37560 4.55576 4.56181 4.62143 4.75080 4.93707 4.97601 5.04182 5.10452 5.29947 5.32132 5.35668 5.37430 5.40957 5.51830 5.56845 5.61144 5.70970 5.80452 5.97608 6.07280 6.15782 6.19639 6.25902 6.29413 6.33989 6.63780 6.79460 6.86063 7.57148 7.71546 8.32451 8.51123 8.61833 9.14428 9.50658 10.58615 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.002756 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.426007 B =10157.209437 C =11063.728787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.097 3.903 3 Si 0.906 3.094 4 H -0.248 1.248 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.346 4.346 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.503 3.497 11 O -0.523 6.523 12 C -0.031 4.031 13 C -0.183 4.183 14 C 0.056 3.944 15 C -0.039 4.039 16 C -0.058 4.058 17 C -0.135 4.135 18 C 0.111 3.889 19 C -0.178 4.178 20 C -0.042 4.042 21 C -0.109 4.109 22 C 0.052 3.948 23 O -0.305 6.305 24 N -0.363 5.363 25 O 0.111 5.889 26 C 0.048 3.952 27 C -0.167 4.167 28 C -0.190 4.190 29 H 0.278 0.722 30 H 0.178 0.822 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.741 -2.009 -8.458 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.116 4.116 3 Si 0.735 3.265 4 H -0.174 1.174 5 H -0.231 1.231 6 H -0.201 1.201 7 C -0.472 4.472 8 H 0.125 0.875 9 N -0.118 5.118 10 C 0.293 3.707 11 O -0.407 6.407 12 C -0.097 4.097 13 C -0.207 4.207 14 C -0.100 4.100 15 C -0.040 4.040 16 C -0.077 4.077 17 C -0.154 4.154 18 C 0.065 3.935 19 C -0.178 4.178 20 C -0.061 4.061 21 C -0.146 4.146 22 C -0.023 4.023 23 O -0.218 6.218 24 N -0.067 5.067 25 O 0.042 5.958 26 C -0.057 4.057 27 C -0.205 4.205 28 C -0.229 4.229 29 H 0.088 0.912 30 H 0.196 0.804 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.211 -2.079 -8.363 22.895 hybrid contribution -0.020 1.078 -0.251 1.107 sum 21.191 -1.001 -8.614 22.897 Atomic orbital electron populations 1.69698 1.07014 1.28946 1.41783 1.25388 0.94951 0.99716 0.91560 0.86451 0.79393 0.81793 0.78820 1.17391 1.23137 1.20123 1.18876 0.84489 0.96866 1.46928 0.87543 1.43024 1.08587 1.40582 1.19595 1.16634 0.83192 0.88225 0.82684 1.90718 1.48902 1.41146 1.59892 1.24892 0.91530 0.98004 0.95241 1.22663 0.92898 1.05385 0.99705 1.21672 0.93558 0.99932 0.94805 1.17481 0.91404 1.01468 0.93627 1.20914 0.99668 0.95539 0.91608 1.20146 0.88942 1.04914 1.01376 1.19697 0.88649 0.95731 0.89438 1.20631 0.95968 1.04739 0.96510 1.20298 0.90822 0.97435 0.97587 1.21792 0.92514 1.03496 0.96822 1.23865 0.92058 0.91440 0.94973 1.86838 1.25514 1.51462 1.58022 1.73904 1.07650 1.19135 1.06007 1.85065 1.13567 1.56203 1.40951 1.22149 0.95099 1.00249 0.88208 1.23157 1.01868 0.94665 1.00774 1.23259 0.99881 0.99464 1.00277 0.91185 0.80443 0.84156 0.84743 0.85010 0.89031 0.88890 0.87513 0.90379 0.85860 0.86920 0.89080 0.89056 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.27 13.95 55.51 0.77 -23.50 16 2 C 0.10 2.70 4.79 -17.44 -0.08 2.62 16 3 Si 0.91 23.32 24.90 -169.99 -4.23 19.09 16 4 H -0.25 -6.67 6.25 56.52 0.35 -6.31 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.35 -9.20 8.63 -15.05 -0.13 -9.33 16 8 H 0.11 2.90 7.08 -52.49 -0.37 2.53 16 9 N -0.40 -9.51 2.48 -108.99 -0.27 -9.78 16 10 C 0.50 12.13 6.06 -12.57 -0.08 12.05 16 11 O -0.52 -14.18 12.14 5.23 0.06 -14.12 16 12 C -0.03 -0.63 6.94 -36.42 -0.25 -0.88 16 13 C -0.18 -3.24 10.31 -38.62 -0.40 -3.64 16 14 C 0.06 0.91 7.05 -82.55 -0.58 0.33 16 15 C -0.04 -0.53 5.88 -104.84 -0.62 -1.15 16 16 C -0.06 -0.69 9.57 -39.36 -0.38 -1.06 16 17 C -0.14 -1.48 10.05 -39.35 -0.40 -1.88 16 18 C 0.11 1.26 7.04 -38.84 -0.27 0.99 16 19 C -0.18 -1.95 6.26 -104.12 -0.65 -2.60 16 20 C -0.04 -0.53 9.69 -39.40 -0.38 -0.91 16 21 C -0.11 -0.81 7.12 -26.51 -0.19 -1.00 16 22 C 0.05 0.35 8.01 38.05 0.30 0.65 16 23 O -0.30 -3.21 11.10 -20.10 -0.22 -3.44 16 24 N -0.36 -6.31 11.79 33.40 0.39 -5.91 16 25 O 0.11 2.05 7.90 15.46 0.12 2.17 16 26 C 0.05 0.92 5.47 -67.93 -0.37 0.55 16 27 C -0.17 -2.80 9.80 -26.73 -0.26 -3.06 16 28 C -0.19 -3.27 10.37 -26.72 -0.28 -3.55 16 29 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.18 2.81 7.58 -52.48 -0.40 2.41 16 31 H 0.14 1.45 7.22 -52.48 -0.38 1.07 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.59 7.90 -52.48 -0.41 1.18 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.12 2.18 5.51 -51.93 -0.29 1.89 16 39 H 0.11 2.09 6.55 -51.93 -0.34 1.75 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -31.96 352.97 -7.82 -39.79 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.75 Total: 2.25 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -5.01 Total: -11.86 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.90 Total: -39.19 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.04 Total: -15.38 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.23 Total: 19.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.96 -7.82 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434102562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.558 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds