Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.09007 * 109.46609 * 97.89120 * 3 2 1 5 5 N 1.46488 * 109.47408 * 337.88879 * 3 2 1 6 6 S 1.65599 * 120.00178 * 94.60309 * 5 3 2 7 7 O 1.42105 * 106.40599 * 180.02562 * 6 5 3 8 8 O 1.42106 * 106.40074 * 312.93251 * 6 5 3 9 9 N 1.65595 * 107.22006 * 66.47041 * 6 5 3 10 10 C 1.46501 * 120.00274 * 83.17946 * 9 6 5 11 11 C 1.53004 * 109.47311 * 95.96423 * 10 9 6 12 12 C 1.46501 * 120.00338 * 263.18087 * 9 6 5 13 13 C 1.50696 * 109.47254 * 100.38736 * 12 9 6 14 14 H 1.08006 * 120.00333 * 4.02761 * 13 12 9 15 15 C 1.37876 * 120.00211 * 184.02933 * 13 12 9 16 16 N 1.31516 * 119.99988 * 6.27926 * 15 13 12 17 17 Si 1.86800 * 120.00083 * 186.28610 * 15 13 12 18 18 H 1.48496 * 109.47619 * 64.07663 * 17 15 13 19 19 H 1.48509 * 109.47161 * 184.07859 * 17 15 13 20 20 H 1.48498 * 109.47208 * 304.07502 * 17 15 13 21 21 C 1.50703 * 109.46883 * 217.88537 * 3 2 1 22 22 C 1.38244 * 119.97168 * 254.30803 * 21 3 2 23 23 C 1.38203 * 120.01949 * 179.97438 * 22 21 3 24 24 C 1.38454 * 119.97661 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.02691 * 179.97438 * 24 23 22 26 26 C 1.38456 * 119.94986 * 0.25072 * 24 23 22 27 27 C 1.38201 * 119.97415 * 359.47311 * 26 24 23 28 28 H 4.18742 * 15.03928 * 0.02562 * 4 2 1 29 29 H 0.97006 * 120.00330 * 274.59980 * 5 3 2 30 30 H 1.09000 * 109.47389 * 215.97028 * 10 9 6 31 31 H 1.09000 * 109.46705 * 335.96964 * 10 9 6 32 32 H 1.08999 * 109.46883 * 305.04280 * 11 10 9 33 33 H 1.09005 * 109.46779 * 65.04006 * 11 10 9 34 34 H 1.08996 * 109.47309 * 185.03546 * 11 10 9 35 35 H 1.08996 * 109.47429 * 220.39165 * 12 9 6 36 36 H 1.09007 * 109.46869 * 340.38920 * 12 9 6 37 37 H 0.97003 * 120.00219 * 179.97438 * 16 15 13 38 38 H 1.07992 * 119.99073 * 0.02562 * 22 21 3 39 39 H 1.08002 * 120.01004 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.01937 * 179.74051 * 26 24 23 41 41 H 1.08001 * 119.99138 * 180.29586 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0093 0.1419 -1.0180 5 7 3.1350 -1.2786 0.5198 6 16 3.5201 -2.5042 -0.5251 7 8 3.9552 -3.5936 0.2769 8 8 2.4424 -2.5995 -1.4464 9 7 4.8381 -2.0092 -1.3968 10 6 6.1843 -2.1605 -0.8389 11 6 6.8098 -3.4560 -1.3600 12 6 4.6581 -1.4200 -2.7260 13 6 4.7541 0.0807 -2.6274 14 1 4.9958 0.5455 -1.6830 15 6 4.5332 0.8604 -3.7429 16 7 4.1187 0.3060 -4.8611 17 14 4.8228 2.7042 -3.6659 18 1 6.2625 2.9692 -3.4166 19 1 4.4217 3.3225 -4.9552 20 1 4.0144 3.2867 -2.5649 21 6 3.1478 1.1223 0.8725 22 6 3.6829 2.2592 0.2961 23 6 4.1429 3.2886 1.0954 24 6 4.0681 3.1807 2.4737 25 9 4.5179 4.1862 3.2559 26 6 3.5373 2.0391 3.0498 27 6 3.0727 1.0134 2.2486 28 1 -1.0500 0.0004 0.0003 29 1 3.2332 -1.4079 1.4762 30 1 6.7999 -1.3129 -1.1403 31 1 6.1247 -2.1977 0.2488 32 1 6.1493 -4.2938 -1.1364 33 1 6.9517 -3.3829 -2.4382 34 1 7.7738 -3.6141 -0.8766 35 1 5.4341 -1.7905 -3.3958 36 1 3.6787 -1.6966 -3.1164 37 1 3.9629 0.8546 -5.6458 38 1 3.7407 2.3434 -0.7789 39 1 4.5605 4.1770 0.6449 40 1 3.4823 1.9520 4.1249 41 1 2.6542 0.1248 2.6977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491305389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -41.001796 kcal Electronic energy + Delta-G solvation = -28406.159567 eV Core-core repulsion = 24329.045714 eV Total energy + Delta-G solvation = -4077.113853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.91120 -39.42628 -36.74178 -36.14685 -35.78315 -35.24328 -32.82389 -31.93447 -31.16765 -30.36728 -29.97903 -26.74117 -25.79957 -23.33022 -23.01521 -21.77789 -21.70333 -19.05958 -18.35489 -17.80045 -17.30850 -16.81031 -16.64003 -16.30907 -15.91412 -15.60101 -15.37694 -14.98468 -14.60436 -14.23124 -13.91315 -13.72831 -13.52072 -13.35189 -12.96587 -12.90718 -12.33892 -12.30845 -12.12375 -12.02966 -11.73280 -11.56327 -11.45702 -11.33245 -11.22286 -11.07833 -10.87330 -10.54939 -10.43106 -10.24168 -10.14510 -10.00237 -9.79575 -9.58009 -9.10115 -8.62769 -8.58491 -8.13915 -6.22387 -4.29317 1.02014 1.21594 1.26560 2.94204 3.10554 3.13175 3.21764 3.23923 3.54602 3.64698 4.12580 4.23218 4.23454 4.56805 4.71384 4.84254 4.95567 5.05956 5.08833 5.27465 5.34623 5.38273 5.54484 5.73845 5.79814 5.87034 5.95810 6.05852 6.09018 6.13626 6.18523 6.27730 6.31075 6.59980 6.64148 6.67323 6.86946 7.12944 7.29172 7.37561 7.60407 7.74931 7.89944 8.05750 8.75292 9.35453 10.85123 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.005994 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.260637 B = 4670.078935 C = 5981.149962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.184 4.184 3 C 0.295 3.705 4 H 0.152 0.848 5 N -1.120 6.120 6 S 2.779 3.221 7 O -0.996 6.996 8 O -0.969 6.969 9 N -0.990 5.990 10 C 0.131 3.869 11 C -0.169 4.169 12 C 0.240 3.760 13 C -0.550 4.550 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.879 5.879 17 Si 0.882 3.118 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.085 4.085 22 C -0.069 4.069 23 C -0.152 4.152 24 C 0.096 3.904 25 F -0.143 7.143 26 C -0.156 4.156 27 C -0.078 4.078 28 H 0.217 0.783 29 H 0.407 0.593 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 2.230 12.234 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.188 3.812 4 H 0.169 0.831 5 N -0.875 5.875 6 S 2.787 3.213 7 O -0.980 6.980 8 O -0.952 6.952 9 N -0.832 5.832 10 C 0.005 3.995 11 C -0.229 4.229 12 C 0.118 3.882 13 C -0.589 4.589 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.516 5.516 17 Si 0.710 3.290 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.087 4.087 22 C -0.087 4.087 23 C -0.170 4.170 24 C 0.077 3.923 25 F -0.122 7.122 26 C -0.175 4.175 27 C -0.097 4.097 28 H 0.234 0.766 29 H 0.240 0.760 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.835 1.462 11.751 11.871 hybrid contribution 0.331 1.631 0.500 1.738 sum -0.504 3.094 12.251 12.646 Atomic orbital electron populations 1.24796 0.95703 0.99178 1.01118 1.23241 0.94299 1.00955 1.00095 1.16666 0.83428 0.80963 1.00128 0.83074 1.56302 1.81741 1.28665 1.20797 1.02040 0.73714 0.72855 0.72669 1.93562 1.82963 1.50639 1.70808 1.93611 1.53061 1.85791 1.62784 1.57739 1.17859 1.77827 1.29801 1.20975 0.84141 0.98147 0.96286 1.22198 1.00254 0.98391 1.02014 1.19275 0.99347 0.92711 0.76883 1.21522 1.49671 0.91628 0.96122 0.91556 1.24959 0.94540 0.98567 0.95466 1.69923 1.43431 1.36275 1.01990 0.86856 0.79031 0.85347 0.77783 1.19938 1.21082 1.19469 1.19805 0.99685 0.95534 0.93686 1.21300 0.94373 0.91443 1.01609 1.21151 1.03259 1.01052 0.91577 1.17738 0.99729 0.86195 0.88687 1.91481 1.87063 1.59105 1.74565 1.21024 1.02377 0.93326 1.00776 1.20796 0.97892 0.98267 0.92727 0.76640 0.75976 0.90016 0.92135 0.92510 0.92115 0.92428 0.94664 0.92280 0.92312 0.83475 0.84626 0.84817 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 19.25 29.55 0.57 -2.30 16 2 C -0.18 -3.16 12.79 -37.12 -0.47 -3.63 16 3 C 0.29 5.02 2.81 -71.87 -0.20 4.81 16 4 H 0.15 2.98 5.18 -51.93 -0.27 2.72 16 5 N -1.12 -17.91 5.46 -8.32 -0.05 -17.95 16 6 S 2.78 53.53 5.99 -107.50 -0.64 52.89 16 7 O -1.00 -19.75 17.27 -57.17 -0.99 -20.74 16 8 O -0.97 -22.20 16.26 -57.17 -0.93 -23.13 16 9 N -0.99 -19.21 2.84 -115.66 -0.33 -19.53 16 10 C 0.13 2.15 6.04 -4.04 -0.02 2.13 16 11 C -0.17 -2.58 10.23 37.16 0.38 -2.20 16 12 C 0.24 5.55 5.45 -5.20 -0.03 5.52 16 13 C -0.55 -12.98 7.28 -34.44 -0.25 -13.23 16 14 H 0.07 1.46 7.38 -52.48 -0.39 1.07 16 15 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 16 N -0.88 -23.66 13.29 55.43 0.74 -22.92 16 17 Si 0.88 18.76 29.06 -169.99 -4.94 13.82 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.26 5.93 56.52 0.33 -4.93 16 21 C -0.09 -1.27 4.91 -104.62 -0.51 -1.78 16 22 C -0.07 -1.05 9.66 -39.59 -0.38 -1.43 16 23 C -0.15 -2.07 10.03 -39.51 -0.40 -2.47 16 24 C 0.10 1.25 7.30 -39.42 -0.29 0.96 16 25 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 26 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 27 C -0.08 -0.97 9.01 -39.59 -0.36 -1.33 16 28 H 0.22 2.35 7.80 -54.09 -0.42 1.93 16 29 H 0.41 5.25 7.38 -34.47 -0.25 5.00 16 30 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 31 H 0.06 0.88 7.76 -51.93 -0.40 0.47 16 32 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.54 6.76 -51.92 -0.35 1.19 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.15 2.45 6.15 -52.49 -0.32 2.13 16 39 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.35 7.17 -52.49 -0.38 0.98 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -29.95 368.41 -8.95 -38.90 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.94 Total: 10.53 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.46 Total: -15.56 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.36 Total: -60.41 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.92 Total: -43.87 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.94 Total: 13.82 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.64 Total: 52.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.95 -8.95 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491305389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.103 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds