Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48495 * 109.46990 * 239.99491 * 3 2 1 5 5 H 1.48501 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46833 * 119.99478 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99870 * 170.16471 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41172 * 120.99170 * 153.72646 * 9 7 2 11 11 C 1.37594 * 119.01359 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11005 * 0.02562 * 11 10 9 13 13 C 1.32472 * 122.22618 * 359.65377 * 12 11 10 14 14 N 1.39475 * 119.57998 * 180.34295 * 13 12 11 15 15 C 1.34783 * 119.99474 * 5.65161 * 14 13 12 16 16 O 1.21276 * 120.00352 * 5.08077 * 15 14 13 17 17 C 1.50706 * 119.99661 * 185.07745 * 15 14 13 18 18 C 1.50699 * 109.47039 * 180.02562 * 17 15 14 19 19 C 1.38255 * 119.94432 * 269.73022 * 18 17 15 20 20 C 1.38189 * 120.11028 * 179.77858 * 19 18 17 21 21 C 1.38699 * 120.06939 * 0.55985 * 20 19 18 22 22 C 1.38973 * 119.81935 * 359.62288 * 21 20 19 23 23 C 1.38193 * 119.94231 * 90.00306 * 18 17 15 24 24 O 1.36112 * 120.78535 * 180.26599 * 22 21 20 25 25 C 1.43176 * 116.71513 * 342.81659 * 24 22 21 26 26 C 1.53472 * 108.25044 * 46.15959 * 25 24 22 27 27 O 1.36106 * 119.39818 * 179.54061 * 21 20 19 28 28 C 1.38590 * 120.84386 * 0.63869 * 13 12 11 29 29 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.49563 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.44539 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00577 * 185.65788 * 14 13 12 33 33 H 1.08993 * 109.47260 * 300.00556 * 17 15 14 34 34 H 1.09000 * 109.46826 * 60.00183 * 17 15 14 35 35 H 1.08002 * 119.94357 * 0.02565 * 19 18 17 36 36 H 1.08000 * 119.96624 * 180.29470 * 20 19 18 37 37 H 1.08006 * 119.96641 * 359.97438 * 23 18 17 38 38 H 1.08993 * 109.70909 * 165.84922 * 25 24 22 39 39 H 1.09006 * 109.70557 * 286.47629 * 25 24 22 40 40 H 1.09005 * 109.70623 * 59.94664 * 26 25 24 41 41 H 1.08994 * 109.70905 * 180.57370 * 26 25 24 42 42 H 1.08007 * 120.60588 * 179.68091 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0951 1.6964 1.2126 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1592 9 6 1.3154 -2.4294 0.2104 10 6 1.8135 -3.6469 -0.3020 11 6 1.1073 -4.8056 -0.0742 12 7 -0.0215 -4.7932 0.6115 13 6 -0.5278 -3.6789 1.1185 14 7 -1.7204 -3.7306 1.8399 15 6 -2.2903 -4.9205 2.1153 16 8 -1.7211 -5.9491 1.8172 17 6 -3.6350 -4.9729 2.7938 18 6 -4.0448 -6.4102 2.9865 19 6 -4.7772 -7.0561 2.0078 20 6 -5.1509 -8.3755 2.1788 21 6 -4.8020 -9.0519 3.3383 22 6 -4.0690 -8.4015 4.3238 23 6 -3.6927 -7.0787 4.1435 24 8 -3.7113 -9.0480 5.4669 25 6 -4.4220 -10.2522 5.7746 26 6 -4.4987 -11.1041 4.5003 27 8 -5.1852 -10.3482 3.4967 28 6 0.1091 -2.4617 0.9360 29 1 -0.4850 0.8401 -0.0004 30 1 2.7348 -3.6684 -0.8651 31 1 1.4818 -5.7408 -0.4634 32 1 -2.1396 -2.9102 2.1434 33 1 -3.5718 -4.4803 3.7640 34 1 -4.3741 -4.4637 2.1753 35 1 -5.0544 -6.5298 1.1063 36 1 -5.7190 -8.8792 1.4107 37 1 -3.1239 -6.5706 4.9083 38 1 -3.8936 -10.8022 6.5532 39 1 -5.4286 -10.0083 6.1147 40 1 -3.4921 -11.3426 4.1565 41 1 -5.0453 -12.0244 4.7057 42 1 -0.3099 -1.5548 1.3466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -42.898294 kcal Electronic energy + Delta-G solvation = -27869.471953 eV Core-core repulsion = 23780.292215 eV Total energy + Delta-G solvation = -4089.179738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34604 -39.67221 -38.27992 -37.36656 -37.31824 -34.30242 -33.68745 -32.49748 -30.99319 -30.52575 -29.68741 -28.60151 -26.84024 -25.98356 -24.62814 -22.86663 -22.00475 -21.70694 -20.57132 -19.61179 -18.67905 -17.67976 -17.37529 -17.29876 -16.79119 -15.81740 -15.52021 -15.27944 -15.18538 -14.93594 -14.54170 -14.39145 -14.18756 -14.06733 -13.95255 -13.88412 -13.48847 -12.99195 -12.81090 -12.63127 -12.54095 -12.00753 -11.89996 -11.59513 -11.39623 -11.26028 -11.20167 -11.09710 -10.90610 -10.60415 -10.29238 -10.14666 -9.71675 -9.39853 -9.33563 -8.62400 -8.07028 -7.97806 -7.70946 -7.02894 -6.74263 -4.62944 1.23019 1.31482 2.56936 2.80853 2.86803 3.00564 3.03692 3.05247 3.20846 3.47966 3.51423 3.85081 3.90972 4.01014 4.52163 4.54802 4.63169 4.69190 4.72346 4.92553 5.10171 5.17848 5.20431 5.30642 5.32407 5.46728 5.56223 5.68787 5.87408 5.99568 6.07400 6.12565 6.50997 6.58482 6.61093 6.66798 6.76956 6.80938 6.96064 7.13217 7.31676 7.39412 7.47782 7.79249 7.96189 8.22722 8.43651 8.70889 8.75586 8.92145 9.69608 10.09581 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.002107 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.491308 B =13285.951322 C =13556.501010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.336 3.664 14 N -0.660 5.660 15 C 0.498 3.502 16 O -0.473 6.473 17 C -0.101 4.101 18 C -0.053 4.053 19 C -0.097 4.097 20 C -0.111 4.111 21 C 0.045 3.955 22 C 0.050 3.950 23 C -0.097 4.097 24 O -0.308 6.308 25 C 0.021 3.979 26 C 0.020 3.980 27 O -0.310 6.310 28 C -0.239 4.239 29 H 0.281 0.719 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.408 0.592 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 -11.387 9.784 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.282 3.718 16 O -0.342 6.342 17 C -0.141 4.141 18 C -0.054 4.054 19 C -0.116 4.116 20 C -0.130 4.130 21 C 0.000 4.000 22 C 0.005 3.995 23 C -0.116 4.116 24 O -0.223 6.223 25 C -0.054 4.054 26 C -0.056 4.056 27 O -0.225 6.225 28 C -0.265 4.265 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.243 0.757 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.960 -12.877 9.751 20.709 hybrid contribution 0.653 1.837 0.032 1.950 sum -12.307 -11.040 9.783 19.211 Atomic orbital electron populations 1.69733 1.07547 1.29255 1.35678 1.25946 0.94892 1.01416 0.92022 0.86254 0.79981 0.79795 0.80030 1.18929 1.20266 1.18797 1.19545 0.95806 0.90016 1.43231 0.90130 1.17590 0.90411 0.92257 0.86467 1.21925 1.04150 0.94422 1.10127 1.21752 0.90613 0.96509 0.94834 1.67191 1.14956 1.28106 1.16960 1.18212 0.86603 0.90867 0.93193 1.43465 1.23520 1.08986 1.54705 1.20491 0.86852 0.84133 0.80342 1.90803 1.62548 1.32530 1.48315 1.20689 0.96094 0.94431 1.02918 1.19004 0.97694 0.95018 0.93650 1.20772 0.98353 0.93748 0.98678 1.20342 1.02979 0.94625 0.95032 1.18842 1.01709 0.84303 0.95125 1.18759 1.01516 0.92754 0.86431 1.20217 1.01585 0.90851 0.98941 1.86321 1.59255 1.37996 1.38678 1.23593 0.98526 0.85490 0.97837 1.23608 0.99222 0.94819 0.87914 1.86284 1.59442 1.20451 1.56282 1.21674 1.00955 0.95573 1.08261 0.90773 0.88000 0.85949 0.75724 0.88059 0.87775 0.85037 0.84859 0.84950 0.86247 0.90655 0.90459 0.86254 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.40 10.70 55.55 0.59 -18.81 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.92 17.89 29.57 -169.99 -5.03 12.86 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.66 9.14 -37.65 -0.34 -12.00 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 10 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.22 7.89 -12.52 -0.10 -14.32 16 13 C 0.34 8.12 7.40 -154.70 -1.15 6.97 16 14 N -0.66 -12.62 5.39 -11.49 -0.06 -12.69 16 15 C 0.50 9.12 7.77 -10.98 -0.09 9.03 16 16 O -0.47 -10.86 14.33 5.56 0.08 -10.78 16 17 C -0.10 -1.26 5.83 -29.03 -0.17 -1.43 16 18 C -0.05 -0.73 4.37 -104.63 -0.46 -1.18 16 19 C -0.10 -1.27 9.69 -39.59 -0.38 -1.65 16 20 C -0.11 -1.43 9.96 -39.43 -0.39 -1.83 16 21 C 0.04 0.61 6.49 -39.14 -0.25 0.36 16 22 C 0.05 0.70 6.49 -39.14 -0.25 0.45 16 23 C -0.10 -1.37 9.61 -39.43 -0.38 -1.75 16 24 O -0.31 -3.92 10.42 -32.88 -0.34 -4.27 16 25 C 0.02 0.17 7.26 37.40 0.27 0.45 16 26 C 0.02 0.17 7.26 37.40 0.27 0.44 16 27 O -0.31 -3.74 10.42 -32.86 -0.34 -4.09 16 28 C -0.24 -6.04 8.61 -38.48 -0.33 -6.37 16 29 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 30 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 32 H 0.41 6.26 8.70 -40.82 -0.36 5.90 16 33 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 3.31 6.11 -52.48 -0.32 2.99 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -34.14 361.89 -9.53 -43.67 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.87 Total: 11.36 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -4.92 Total: -8.40 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.43 Total: -45.81 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.61 Total: -19.13 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.14 -9.53 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.776 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds