Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00173 * 2 1 4 4 O 1.20833 * 119.99637 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00381 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46581 * 39.99714 * 5 3 2 7 7 C 1.52997 * 109.46839 * 279.99772 * 5 3 2 8 8 S 1.81393 * 109.47256 * 159.99866 * 5 3 2 9 9 C 1.81398 * 102.99888 * 184.99981 * 8 5 3 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 8 5 11 11 H 1.08999 * 109.47130 * 305.00300 * 10 9 8 12 12 O 1.42902 * 109.47014 * 65.00260 * 10 9 8 13 13 C 1.52998 * 109.47336 * 185.00015 * 10 9 8 14 14 O 1.42901 * 109.47487 * 175.00055 * 13 10 9 15 15 C 1.35676 * 117.00217 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81551 * 359.72696 * 15 14 13 17 17 C 1.36439 * 120.17922 * 179.76201 * 16 15 14 18 18 C 1.40829 * 119.81624 * 0.51328 * 17 16 15 19 19 C 1.41217 * 120.18244 * 179.72193 * 18 17 16 20 20 H 1.07998 * 119.99785 * 24.56759 * 19 18 17 21 21 C 1.39889 * 119.99685 * 204.56900 * 19 18 17 22 22 N 1.30873 * 120.00545 * 17.93579 * 21 19 18 23 23 Si 1.86809 * 119.99547 * 197.93189 * 21 19 18 24 24 H 1.48500 * 109.47074 * 90.00035 * 23 21 19 25 25 H 1.48501 * 109.46842 * 210.00124 * 23 21 19 26 26 H 1.48498 * 109.46992 * 330.00251 * 23 21 19 27 27 C 1.40836 * 119.64002 * 359.74026 * 18 17 16 28 28 C 1.36437 * 119.80990 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47408 * 59.99981 * 1 2 3 30 30 H 1.08997 * 109.47485 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47091 * 300.00401 * 1 2 3 32 32 H 1.08997 * 109.47067 * 179.97438 * 7 5 3 33 33 H 1.09001 * 109.46995 * 60.00243 * 7 5 3 34 34 H 1.09000 * 109.47328 * 299.99861 * 7 5 3 35 35 H 1.08991 * 109.47243 * 299.99993 * 9 8 5 36 36 H 1.09003 * 109.47189 * 60.00114 * 9 8 5 37 37 H 0.96691 * 114.00204 * 59.99779 * 12 10 9 38 38 H 1.09004 * 109.47427 * 295.00111 * 13 10 9 39 39 H 1.09000 * 109.47309 * 54.99955 * 13 10 9 40 40 H 1.07994 * 119.90660 * 0.02562 * 16 15 14 41 41 H 1.08001 * 120.09014 * 180.25143 * 17 16 15 42 42 H 0.96996 * 120.00645 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.09748 * 179.97438 * 27 18 17 44 44 H 1.08007 * 119.90662 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9700 0.5079 -0.6614 7 6 4.0892 1.0512 1.4198 8 16 4.0858 2.9115 -0.5854 9 6 5.8921 2.7632 -0.6617 10 6 6.4922 4.0842 -1.1471 11 1 6.0383 4.3617 -2.0984 12 8 6.2374 5.1064 -0.1816 13 6 8.0024 3.9213 -1.3308 14 8 8.5455 5.1171 -1.8939 15 6 9.8827 5.1382 -2.1226 16 6 10.6577 4.0254 -1.8033 17 6 12.0023 4.0368 -2.0347 18 6 12.6080 5.1815 -2.5878 19 6 13.9999 5.2038 -2.8251 20 1 14.5379 4.2786 -2.9697 21 6 14.6818 6.4243 -2.8726 22 7 14.1359 7.4993 -2.3634 23 14 16.3718 6.5197 -3.6629 24 1 16.2257 6.8287 -5.1081 25 1 17.1658 7.5889 -3.0059 26 1 17.0672 5.2174 -3.5031 27 6 11.8181 6.3041 -2.9028 28 6 10.4741 6.2748 -2.6697 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.1777 1.1079 1.4193 33 1 3.7771 0.0678 1.7711 34 1 3.6854 1.8183 2.0806 35 1 6.2797 2.5302 0.3299 36 1 6.1622 1.9657 -1.3540 37 1 6.6130 4.9258 0.6909 38 1 8.4677 3.7314 -0.3635 39 1 8.1988 3.0831 -1.9993 40 1 10.1922 3.1499 -1.3755 41 1 12.6011 3.1718 -1.7904 42 1 14.6086 8.3456 -2.3967 43 1 12.2750 7.1861 -3.3269 44 1 9.8669 7.1350 -2.9102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554233820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -154.183469 kcal Electronic energy + Delta-G solvation = -25620.731179 eV Core-core repulsion = 21629.876955 eV Total energy + Delta-G solvation = -3990.854225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91877 -39.09736 -37.53746 -36.99255 -36.06166 -33.99710 -33.34272 -31.66676 -29.80326 -29.06626 -28.34285 -26.84606 -25.23568 -24.66155 -22.47987 -21.48554 -20.72894 -20.64071 -18.27311 -17.79731 -17.38665 -17.05756 -16.83893 -16.56717 -16.31642 -15.90459 -15.27637 -15.03839 -14.71169 -14.44899 -14.09733 -14.08068 -13.94090 -13.58111 -13.07731 -13.04909 -12.76343 -12.61630 -12.45214 -12.31048 -12.20653 -12.08046 -11.83352 -11.42716 -11.28868 -11.20345 -11.11991 -10.91445 -10.87913 -10.64922 -10.18804 -10.12769 -9.99914 -9.84470 -9.35988 -9.04794 -7.99493 -7.66968 -7.06191 -6.74146 -4.27857 0.83131 1.69474 2.06991 2.27650 2.75818 2.92537 3.07738 3.10822 3.19746 3.75916 3.93890 4.15078 4.19930 4.25704 4.43918 4.59575 4.63526 4.64872 4.72223 4.76722 4.95422 4.98730 5.05148 5.10727 5.13696 5.25261 5.50044 5.52464 5.64430 5.82970 5.88358 6.01696 6.19966 6.69975 6.95131 7.08599 7.16186 7.20753 7.43221 7.52991 7.59108 7.75898 7.98468 8.18144 8.41898 8.62741 8.87846 8.96152 10.20307 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.042320 B = 0.001600 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.462184 B =17492.423731 C =17819.361549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.482 3.518 4 O -0.482 6.482 5 C -0.081 4.081 6 H 0.120 0.880 7 C -0.144 4.144 8 S -0.149 6.149 9 C -0.139 4.139 10 C 0.129 3.871 11 H 0.115 0.885 12 O -0.540 6.540 13 C 0.044 3.956 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.133 4.133 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.374 0.626 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.280 0.720 43 H 0.126 0.874 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -14.349 6.036 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.322 3.678 4 O -0.367 6.367 5 C -0.211 4.211 6 H 0.139 0.861 7 C -0.203 4.203 8 S 0.079 5.921 9 C -0.287 4.287 10 C 0.068 3.932 11 H 0.133 0.867 12 O -0.344 6.344 13 C -0.034 4.034 14 O -0.231 6.231 15 C -0.054 4.054 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.494 4.494 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.221 0.779 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.144 0.856 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.173 -12.504 5.296 25.153 hybrid contribution 1.818 -1.616 0.529 2.489 sum -19.355 -14.120 5.825 24.656 Atomic orbital electron populations 1.23342 0.75579 1.03985 1.02920 1.86478 1.23884 1.32680 1.84167 1.22629 0.90315 0.81857 0.73022 1.90740 1.66374 1.36006 1.43572 1.22983 0.91936 1.02422 1.03740 0.86146 1.22030 1.02332 1.03725 0.92190 1.87791 1.03714 1.13124 1.87459 1.24320 0.95583 1.03047 1.05786 1.21528 0.92761 0.84983 0.93882 0.86705 1.86693 1.79255 1.45186 1.23275 1.23059 0.92804 0.89026 0.98554 1.85886 1.21583 1.35932 1.79746 1.18607 0.80739 0.96590 1.09425 1.20379 0.95344 0.96569 1.06378 1.20545 0.93487 1.00069 1.07773 1.17606 0.93486 0.90909 0.89415 1.19472 0.92938 0.93279 1.43689 0.90532 1.25878 1.00079 0.95240 0.92986 1.69826 1.38844 1.00928 1.32764 0.86325 0.81465 0.78915 0.80071 1.19301 1.20363 1.18720 1.20991 0.90898 1.00453 1.02918 1.19849 0.95086 0.95348 1.03360 0.91564 0.87755 0.91639 0.90458 0.90606 0.90396 0.89038 0.88512 0.77932 0.92672 0.92219 0.88989 0.88774 0.90865 0.85637 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.87 10.57 -39.26 -0.41 -3.29 16 3 C 0.48 4.71 7.13 36.01 0.26 4.97 16 4 O -0.48 -6.24 15.79 -18.76 -0.30 -6.53 16 5 C -0.08 -0.64 3.29 -27.88 -0.09 -0.74 16 6 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 7 C -0.14 -0.86 9.08 37.16 0.34 -0.52 16 8 S -0.15 -1.58 20.18 -107.50 -2.17 -3.75 16 9 C -0.14 -1.20 5.30 37.16 0.20 -1.01 16 10 C 0.13 1.56 3.24 -26.73 -0.09 1.47 16 11 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 12 O -0.54 -7.22 13.06 -40.08 -0.52 -7.74 16 13 C 0.04 0.63 4.37 37.16 0.16 0.80 16 14 O -0.32 -6.32 10.09 -23.58 -0.24 -6.56 16 15 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 16 C -0.17 -3.69 8.96 -39.83 -0.36 -4.05 16 17 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 18 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 19 C -0.46 -12.21 9.04 -37.83 -0.34 -12.55 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 21 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.80 -20.57 10.96 55.54 0.61 -19.96 16 23 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 28 C -0.12 -2.85 9.92 -39.83 -0.40 -3.24 16 29 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.08 0.38 6.92 -51.93 -0.36 0.02 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.63 7.14 -51.93 -0.37 0.26 16 36 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.37 3.65 9.04 45.56 0.41 4.06 16 38 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 39 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 40 H 0.09 1.70 6.27 -52.49 -0.33 1.38 16 41 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 43 H 0.13 3.34 6.16 -52.48 -0.32 3.02 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.27 386.52 -8.70 -40.97 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.54 Total: 7.08 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.92 Total: -19.57 kcal Atomic # 7 Polarization: -20.57 SS G_CDS: 0.61 Total: -19.96 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.47 Total: -24.12 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.17 Total: -3.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.27 -8.70 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554233820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.215 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds