Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00173 * 2 1 4 4 O 1.20833 * 119.99637 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00381 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46581 * 39.99714 * 5 3 2 7 7 C 1.52997 * 109.46839 * 279.99772 * 5 3 2 8 8 S 1.81393 * 109.47256 * 159.99866 * 5 3 2 9 9 C 1.81398 * 102.99888 * 184.99981 * 8 5 3 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 8 5 11 11 H 1.08999 * 109.47130 * 305.00300 * 10 9 8 12 12 O 1.42902 * 109.47014 * 65.00260 * 10 9 8 13 13 C 1.52998 * 109.47336 * 185.00015 * 10 9 8 14 14 O 1.42901 * 109.47487 * 175.00055 * 13 10 9 15 15 C 1.35676 * 117.00217 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81551 * 359.72696 * 15 14 13 17 17 C 1.36439 * 120.17922 * 179.76201 * 16 15 14 18 18 C 1.40829 * 119.81624 * 0.51328 * 17 16 15 19 19 C 1.41217 * 120.18244 * 179.72193 * 18 17 16 20 20 H 1.07998 * 119.99785 * 24.56759 * 19 18 17 21 21 C 1.39889 * 119.99685 * 204.56900 * 19 18 17 22 22 N 1.30873 * 120.00545 * 17.93579 * 21 19 18 23 23 Si 1.86809 * 119.99547 * 197.93189 * 21 19 18 24 24 H 1.48500 * 109.47074 * 90.00035 * 23 21 19 25 25 H 1.48501 * 109.46842 * 210.00124 * 23 21 19 26 26 H 1.48498 * 109.46992 * 330.00251 * 23 21 19 27 27 C 1.40836 * 119.64002 * 359.74026 * 18 17 16 28 28 C 1.36437 * 119.80990 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47408 * 59.99981 * 1 2 3 30 30 H 1.08997 * 109.47485 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47091 * 300.00401 * 1 2 3 32 32 H 1.08997 * 109.47067 * 179.97438 * 7 5 3 33 33 H 1.09001 * 109.46995 * 60.00243 * 7 5 3 34 34 H 1.09000 * 109.47328 * 299.99861 * 7 5 3 35 35 H 1.08991 * 109.47243 * 299.99993 * 9 8 5 36 36 H 1.09003 * 109.47189 * 60.00114 * 9 8 5 37 37 H 0.96691 * 114.00204 * 59.99779 * 12 10 9 38 38 H 1.09004 * 109.47427 * 295.00111 * 13 10 9 39 39 H 1.09000 * 109.47309 * 54.99955 * 13 10 9 40 40 H 1.07994 * 119.90660 * 0.02562 * 16 15 14 41 41 H 1.08001 * 120.09014 * 180.25143 * 17 16 15 42 42 H 0.96996 * 120.00645 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.09748 * 179.97438 * 27 18 17 44 44 H 1.08007 * 119.90662 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9700 0.5079 -0.6614 7 6 4.0892 1.0512 1.4198 8 16 4.0858 2.9115 -0.5854 9 6 5.8921 2.7632 -0.6617 10 6 6.4922 4.0842 -1.1471 11 1 6.0383 4.3617 -2.0984 12 8 6.2374 5.1064 -0.1816 13 6 8.0024 3.9213 -1.3308 14 8 8.5455 5.1171 -1.8939 15 6 9.8827 5.1382 -2.1226 16 6 10.6577 4.0254 -1.8033 17 6 12.0023 4.0368 -2.0347 18 6 12.6080 5.1815 -2.5878 19 6 13.9999 5.2038 -2.8251 20 1 14.5379 4.2786 -2.9697 21 6 14.6818 6.4243 -2.8726 22 7 14.1359 7.4993 -2.3634 23 14 16.3718 6.5197 -3.6629 24 1 16.2257 6.8287 -5.1081 25 1 17.1658 7.5889 -3.0059 26 1 17.0672 5.2174 -3.5031 27 6 11.8181 6.3041 -2.9028 28 6 10.4741 6.2748 -2.6697 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.1777 1.1079 1.4193 33 1 3.7771 0.0678 1.7711 34 1 3.6854 1.8183 2.0806 35 1 6.2797 2.5302 0.3299 36 1 6.1622 1.9657 -1.3540 37 1 6.6130 4.9258 0.6909 38 1 8.4677 3.7314 -0.3635 39 1 8.1988 3.0831 -1.9993 40 1 10.1922 3.1499 -1.3755 41 1 12.6011 3.1718 -1.7904 42 1 14.6086 8.3456 -2.3967 43 1 12.2750 7.1861 -3.3269 44 1 9.8669 7.1350 -2.9102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554233820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -174.078100 kcal Electronic energy + Delta-G solvation = -25621.593875 eV Core-core repulsion = 21629.876955 eV Total energy + Delta-G solvation = -3991.716921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62436 -40.63641 -38.87096 -37.70454 -37.57560 -35.17308 -34.57625 -32.67484 -31.58537 -30.89435 -28.84658 -28.01404 -26.43025 -25.76369 -23.66717 -22.55255 -22.34267 -22.03570 -19.25149 -19.08159 -18.77357 -18.23304 -17.67330 -17.47673 -17.37173 -17.02323 -16.63599 -16.12740 -15.74531 -15.71122 -15.39957 -15.13583 -14.80099 -14.68740 -14.35624 -14.07273 -13.93738 -13.68818 -13.61057 -13.50640 -13.19509 -13.09140 -12.85318 -12.81450 -12.76999 -12.61727 -12.38828 -12.04570 -11.89789 -11.70467 -11.64033 -11.57613 -11.28505 -11.04004 -10.87254 -10.84133 -9.54649 -8.91581 -8.77767 -8.58521 -6.21820 0.13492 0.96069 0.98307 1.04277 1.39613 1.40600 1.53526 1.53630 1.67271 2.23401 2.52078 2.73961 3.41498 3.57272 3.68881 3.71437 3.78089 3.88667 3.91369 3.93172 4.21341 4.25427 4.28335 4.30394 4.37560 4.45927 4.50515 4.61703 4.65861 4.69611 4.85840 4.93210 5.07673 5.08361 5.20352 5.23226 5.29424 5.60396 5.65488 5.89368 6.07212 6.27603 6.51840 6.57687 6.77832 6.83621 6.96328 7.11642 8.37899 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.042320 B = 0.001600 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.462184 B =17492.423731 C =17819.361549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.480 3.520 4 O -0.522 6.522 5 C -0.066 4.066 6 H 0.145 0.855 7 C -0.141 4.141 8 S -0.218 6.218 9 C -0.116 4.116 10 C 0.136 3.864 11 H 0.097 0.903 12 O -0.563 6.563 13 C 0.035 3.965 14 O -0.332 6.332 15 C 0.002 3.998 16 C -0.163 4.163 17 C -0.206 4.206 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.832 5.832 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.388 0.612 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.108 0.892 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.923 -17.065 6.791 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.322 3.678 4 O -0.411 6.411 5 C -0.196 4.196 6 H 0.163 0.837 7 C -0.199 4.199 8 S 0.010 5.990 9 C -0.265 4.265 10 C 0.075 3.925 11 H 0.115 0.885 12 O -0.370 6.370 13 C -0.042 4.042 14 O -0.248 6.248 15 C -0.042 4.042 16 C -0.181 4.181 17 C -0.226 4.226 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.459 5.459 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.181 1.181 27 C -0.173 4.173 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.223 -15.254 6.070 26.832 hybrid contribution 1.565 -0.865 0.367 1.825 sum -19.658 -16.119 6.436 26.224 Atomic orbital electron populations 1.23619 0.74244 1.06046 1.02625 1.86478 1.25241 1.31682 1.83591 1.23068 0.91152 0.81705 0.71843 1.90726 1.67398 1.37342 1.45598 1.23019 0.90630 1.00563 1.05360 0.83680 1.22050 1.03271 1.04139 0.90471 1.88083 1.06249 1.16566 1.88100 1.24146 0.93290 1.01350 1.07684 1.21414 0.91274 0.86505 0.93307 0.88531 1.86663 1.79620 1.46302 1.24415 1.23461 0.93917 0.87426 0.99414 1.85876 1.19844 1.39123 1.80003 1.18663 0.82171 0.95937 1.07465 1.20717 0.94471 0.97659 1.05297 1.20814 0.94751 0.99744 1.07257 1.17968 0.94143 0.92051 0.90720 1.19725 0.93408 0.94080 1.45693 0.90479 1.26729 1.04035 0.94449 0.92825 1.69888 1.40704 1.01610 1.33699 0.85215 0.76452 0.79172 0.78924 1.18892 1.19481 1.18067 1.20889 0.91776 1.00245 1.04373 1.20008 0.94747 0.96650 1.04062 0.92104 0.84500 0.91796 0.88711 0.88951 0.91686 0.86471 0.86302 0.76263 0.90871 0.90394 0.84763 0.87429 0.90266 0.87454 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.11 10.57 -51.43 -0.54 -5.65 16 3 C 0.48 8.87 7.13 71.24 0.51 9.38 16 4 O -0.52 -13.62 15.79 21.94 0.35 -13.27 16 5 C -0.07 -0.90 3.29 29.85 0.10 -0.80 16 6 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.14 -1.27 9.08 71.98 0.65 -0.61 16 8 S -0.22 -4.34 20.18 -56.49 -1.14 -5.48 16 9 C -0.12 -1.64 5.30 71.98 0.38 -1.26 16 10 C 0.14 2.98 3.24 30.59 0.10 3.08 16 11 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 12 O -0.56 -14.29 13.06 -144.34 -1.88 -16.17 16 13 C 0.04 0.90 4.37 71.98 0.31 1.21 16 14 O -0.33 -12.74 10.09 -85.30 -0.86 -13.60 16 15 C 0.00 0.07 6.71 22.79 0.15 0.22 16 16 C -0.16 -6.79 8.96 22.11 0.20 -6.59 16 17 C -0.21 -9.78 9.74 22.48 0.22 -9.57 16 18 C 0.05 2.88 5.57 -21.28 -0.12 2.76 16 19 C -0.50 -26.83 9.04 23.40 0.21 -26.62 16 20 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 21 C 0.03 1.69 5.13 85.24 0.44 2.13 16 22 N -0.83 -44.11 10.96 21.82 0.24 -43.88 16 23 Si 0.98 38.31 29.60 68.60 2.03 40.34 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 C -0.15 -8.25 8.64 22.49 0.19 -8.06 16 28 C -0.14 -6.69 9.92 22.11 0.22 -6.47 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 32 H 0.09 0.53 6.92 -2.39 -0.02 0.52 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 1.08 7.14 -2.39 -0.02 1.06 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.39 6.82 9.04 -74.06 -0.67 6.15 16 38 H 0.07 1.64 7.64 -2.38 -0.02 1.62 16 39 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 40 H 0.13 4.37 6.27 -2.91 -0.02 4.35 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.29 13.78 8.30 -92.71 -0.77 13.02 16 43 H 0.11 6.04 6.16 -2.91 -0.02 6.02 16 44 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -72.79 386.52 3.30 -69.48 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.35 Total: 27.94 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 4.77 Total: -39.72 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.24 Total: -43.88 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -2.94 Total: -48.69 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -1.14 Total: -5.48 kcal Total: -72.79 3.30 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554233820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.595 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds