Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99838 * 2 1 4 4 O 1.20824 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99580 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47325 * 324.99956 * 5 3 2 7 7 C 1.53006 * 109.47112 * 85.00111 * 5 3 2 8 8 S 1.81404 * 109.47309 * 204.99941 * 5 3 2 9 9 C 1.81400 * 103.00096 * 174.99827 * 8 5 3 10 10 C 1.52998 * 109.46993 * 179.97438 * 9 8 5 11 11 H 1.09010 * 109.46673 * 60.00061 * 10 9 8 12 12 O 1.42898 * 109.47443 * 300.00644 * 10 9 8 13 13 C 1.52996 * 109.47227 * 180.02562 * 10 9 8 14 14 O 1.42898 * 109.47201 * 185.00354 * 13 10 9 15 15 C 1.35676 * 117.00081 * 179.97438 * 14 13 10 16 16 C 1.39316 * 119.81572 * 359.72578 * 15 14 13 17 17 C 1.36442 * 120.17977 * 179.75934 * 16 15 14 18 18 C 1.40826 * 119.81276 * 0.51114 * 17 16 15 19 19 C 1.41218 * 120.17862 * 179.71541 * 18 17 16 20 20 H 1.08002 * 119.99640 * 24.57116 * 19 18 17 21 21 C 1.39887 * 120.00322 * 204.56460 * 19 18 17 22 22 N 1.30879 * 119.99943 * 17.95304 * 21 19 18 23 23 Si 1.86795 * 120.00314 * 197.94418 * 21 19 18 24 24 H 1.48498 * 109.47090 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47051 * 120.00003 * 23 21 19 26 26 H 1.48499 * 109.47479 * 240.00640 * 23 21 19 27 27 C 1.40831 * 119.64547 * 359.74477 * 18 17 16 28 28 C 1.36444 * 119.81052 * 359.97438 * 27 18 17 29 29 H 1.08992 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46700 * 300.00199 * 1 2 3 31 31 H 1.09004 * 109.46888 * 59.99498 * 1 2 3 32 32 H 1.08988 * 109.46981 * 59.99977 * 7 5 3 33 33 H 1.09007 * 109.46840 * 179.97438 * 7 5 3 34 34 H 1.08997 * 109.47145 * 299.99510 * 7 5 3 35 35 H 1.08997 * 109.46824 * 60.00628 * 9 8 5 36 36 H 1.08990 * 109.47224 * 300.00354 * 9 8 5 37 37 H 0.96702 * 113.99997 * 299.99746 * 12 10 9 38 38 H 1.09001 * 109.47130 * 305.00535 * 13 10 9 39 39 H 1.08995 * 109.47087 * 65.00471 * 13 10 9 40 40 H 1.07996 * 119.90606 * 0.02562 * 16 15 14 41 41 H 1.08003 * 120.08662 * 180.25024 * 17 16 15 42 42 H 0.96999 * 120.00095 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.09791 * 179.97438 * 27 18 17 44 44 H 1.07996 * 119.90730 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9735 0.4530 0.5886 7 6 4.0817 1.1762 -1.4379 8 16 4.0895 2.8542 0.7223 9 6 5.8961 2.7001 0.7758 10 6 6.4993 3.9742 1.3703 11 1 6.1170 4.1200 2.3807 12 8 6.1405 5.0946 0.5592 13 6 8.0231 3.8445 1.4148 14 8 8.5790 4.9831 2.0756 15 6 9.9293 5.0243 2.2006 16 6 10.7037 3.9805 1.6989 17 6 12.0626 4.0167 1.8162 18 6 12.6813 5.1080 2.4560 19 6 14.0867 5.1505 2.5870 20 1 14.7103 4.6042 1.8947 21 6 14.6713 5.9003 3.6131 22 7 13.9546 6.2684 4.6445 23 14 16.4748 6.3759 3.5115 24 1 17.0575 5.8419 2.2543 25 1 16.5979 7.8558 3.5240 26 1 17.2027 5.8088 4.6749 27 6 11.8908 6.1565 2.9652 28 6 10.5335 6.1078 2.8346 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.6746 1.9980 -2.0269 33 1 5.1702 1.2337 -1.4383 34 1 3.7674 0.2272 -1.8722 35 1 6.2784 2.5548 -0.2346 36 1 6.1697 1.8453 1.3941 37 1 6.4488 5.0329 -0.3553 38 1 8.2950 2.9400 1.9589 39 1 8.4128 3.7882 0.3985 40 1 10.2272 3.1425 1.2120 41 1 12.6616 3.2086 1.4231 42 1 14.3600 6.7879 5.3563 43 1 12.3576 6.9968 3.4575 44 1 9.9259 6.9108 3.2248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554233821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -154.038503 kcal Electronic energy + Delta-G solvation = -25624.331725 eV Core-core repulsion = 21633.483786 eV Total energy + Delta-G solvation = -3990.847939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91645 -39.09918 -37.53997 -36.99444 -36.06331 -33.98256 -33.34362 -31.66492 -29.80438 -29.06747 -28.35409 -26.84887 -25.23303 -24.66333 -22.47623 -21.47398 -20.73040 -20.64238 -18.29065 -17.79244 -17.38976 -17.05646 -16.82808 -16.57180 -16.30650 -15.90705 -15.28532 -15.04261 -14.69439 -14.44909 -14.10470 -14.09062 -13.94690 -13.59104 -13.06079 -13.02606 -12.76803 -12.63013 -12.45575 -12.30745 -12.20495 -12.09328 -11.80594 -11.48903 -11.28591 -11.18818 -11.06139 -10.92112 -10.88781 -10.66280 -10.20459 -10.11931 -10.00427 -9.84188 -9.36789 -9.04425 -7.99432 -7.67051 -7.06225 -6.74517 -4.27853 0.81727 1.70639 2.07556 2.27859 2.74834 2.92394 3.07855 3.12751 3.18558 3.76076 3.93875 4.14817 4.20325 4.26304 4.44649 4.59457 4.62974 4.64016 4.72524 4.76581 4.95327 4.99392 5.05236 5.10386 5.13504 5.24845 5.49786 5.53107 5.64256 5.83247 5.88050 6.01598 6.19848 6.69889 6.95003 7.08436 7.16025 7.21164 7.43088 7.52896 7.58652 7.75770 7.98482 8.18027 8.41794 8.62699 8.87789 8.96036 10.19971 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.001600 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.826475 B =17500.549653 C =17782.560610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.482 3.518 4 O -0.482 6.482 5 C -0.082 4.082 6 H 0.120 0.880 7 C -0.144 4.144 8 S -0.147 6.147 9 C -0.139 4.139 10 C 0.129 3.871 11 H 0.115 0.885 12 O -0.539 6.539 13 C 0.044 3.956 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.907 3.093 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.133 4.133 28 C -0.118 4.118 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.373 0.627 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.280 0.720 43 H 0.126 0.874 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 -12.389 -9.356 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.322 3.678 4 O -0.367 6.367 5 C -0.211 4.211 6 H 0.138 0.862 7 C -0.203 4.203 8 S 0.080 5.920 9 C -0.288 4.288 10 C 0.068 3.932 11 H 0.133 0.867 12 O -0.344 6.344 13 C -0.034 4.034 14 O -0.231 6.231 15 C -0.054 4.054 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.731 3.269 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.201 1.201 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.221 0.779 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.144 0.856 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.974 -10.787 -8.171 24.961 hybrid contribution 1.811 -1.466 -0.849 2.480 sum -19.163 -12.254 -9.020 24.469 Atomic orbital electron populations 1.23344 0.75583 1.03988 1.02915 1.86484 1.23892 1.32699 1.84146 1.22620 0.90304 0.81857 0.73002 1.90736 1.66396 1.36020 1.43576 1.22980 0.91955 1.02908 1.03294 0.86224 1.22030 1.02387 1.03999 0.91836 1.87792 1.03708 1.18593 1.81879 1.24322 0.95501 1.03346 1.05581 1.21536 0.91890 0.83483 0.96268 0.86699 1.86695 1.79876 1.42443 1.25356 1.23054 0.92596 0.90261 0.97532 1.85885 1.20154 1.41593 1.75511 1.18608 0.80125 0.98657 1.07966 1.20381 0.95136 0.97776 1.05379 1.20546 0.92876 0.99169 1.09274 1.17608 0.93615 0.89873 0.90344 1.19494 0.91784 1.26319 1.11709 0.90510 1.25880 1.00420 0.93879 0.94022 1.69838 1.38235 1.28510 1.05801 0.86291 0.82246 0.79080 0.79271 1.18477 1.19711 1.20071 1.20989 0.91180 0.99708 1.03378 1.19849 0.94892 0.96643 1.02261 0.87756 0.91560 0.91639 0.90350 0.90427 0.90682 0.89070 0.88470 0.77944 0.92206 0.92690 0.88988 0.88771 0.90929 0.85637 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.90 10.57 -39.26 -0.41 -3.32 16 3 C 0.48 4.73 7.08 36.00 0.25 4.99 16 4 O -0.48 -6.23 15.89 -18.75 -0.30 -6.53 16 5 C -0.08 -0.65 3.29 -27.88 -0.09 -0.74 16 6 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 7 C -0.14 -0.86 9.08 37.16 0.34 -0.52 16 8 S -0.15 -1.56 20.10 -107.50 -2.16 -3.72 16 9 C -0.14 -1.20 5.33 37.16 0.20 -1.00 16 10 C 0.13 1.55 3.30 -26.73 -0.09 1.46 16 11 H 0.12 1.52 8.14 -51.92 -0.42 1.09 16 12 O -0.54 -7.14 12.90 -40.11 -0.52 -7.66 16 13 C 0.04 0.63 4.36 37.16 0.16 0.79 16 14 O -0.32 -6.31 10.09 -23.61 -0.24 -6.55 16 15 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 16 C -0.17 -3.69 8.97 -39.83 -0.36 -4.05 16 17 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 18 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 19 C -0.46 -12.19 9.04 -37.83 -0.34 -12.53 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 21 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 22 N -0.80 -20.56 10.96 55.54 0.61 -19.95 16 23 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 28 C -0.12 -2.85 9.92 -39.83 -0.40 -3.24 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.08 0.54 8.14 -51.94 -0.42 0.11 16 33 H 0.08 0.38 6.92 -51.92 -0.36 0.02 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.62 7.14 -51.93 -0.37 0.25 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.37 3.59 9.05 45.56 0.41 4.01 16 38 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 39 H 0.05 0.72 7.66 -51.93 -0.40 0.33 16 40 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 41 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 42 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 43 H 0.13 3.35 6.16 -52.49 -0.32 3.02 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -32.24 386.41 -8.69 -40.93 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.54 Total: 7.01 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.92 Total: -19.55 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.61 Total: -19.95 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -1.47 Total: -24.05 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.16 Total: -3.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.24 -8.69 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554233821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.110 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds