Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99838 * 2 1 4 4 O 1.20824 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99580 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47325 * 324.99956 * 5 3 2 7 7 C 1.53006 * 109.47112 * 85.00111 * 5 3 2 8 8 S 1.81404 * 109.47309 * 204.99941 * 5 3 2 9 9 C 1.81400 * 103.00096 * 174.99827 * 8 5 3 10 10 C 1.52998 * 109.46993 * 179.97438 * 9 8 5 11 11 H 1.09010 * 109.46673 * 60.00061 * 10 9 8 12 12 O 1.42898 * 109.47443 * 300.00644 * 10 9 8 13 13 C 1.52996 * 109.47227 * 180.02562 * 10 9 8 14 14 O 1.42898 * 109.47201 * 185.00354 * 13 10 9 15 15 C 1.35676 * 117.00081 * 179.97438 * 14 13 10 16 16 C 1.39316 * 119.81572 * 359.72578 * 15 14 13 17 17 C 1.36442 * 120.17977 * 179.75934 * 16 15 14 18 18 C 1.40826 * 119.81276 * 0.51114 * 17 16 15 19 19 C 1.41218 * 120.17862 * 179.71541 * 18 17 16 20 20 H 1.08002 * 119.99640 * 24.57116 * 19 18 17 21 21 C 1.39887 * 120.00322 * 204.56460 * 19 18 17 22 22 N 1.30879 * 119.99943 * 17.95304 * 21 19 18 23 23 Si 1.86795 * 120.00314 * 197.94418 * 21 19 18 24 24 H 1.48498 * 109.47090 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47051 * 120.00003 * 23 21 19 26 26 H 1.48499 * 109.47479 * 240.00640 * 23 21 19 27 27 C 1.40831 * 119.64547 * 359.74477 * 18 17 16 28 28 C 1.36444 * 119.81052 * 359.97438 * 27 18 17 29 29 H 1.08992 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46700 * 300.00199 * 1 2 3 31 31 H 1.09004 * 109.46888 * 59.99498 * 1 2 3 32 32 H 1.08988 * 109.46981 * 59.99977 * 7 5 3 33 33 H 1.09007 * 109.46840 * 179.97438 * 7 5 3 34 34 H 1.08997 * 109.47145 * 299.99510 * 7 5 3 35 35 H 1.08997 * 109.46824 * 60.00628 * 9 8 5 36 36 H 1.08990 * 109.47224 * 300.00354 * 9 8 5 37 37 H 0.96702 * 113.99997 * 299.99746 * 12 10 9 38 38 H 1.09001 * 109.47130 * 305.00535 * 13 10 9 39 39 H 1.08995 * 109.47087 * 65.00471 * 13 10 9 40 40 H 1.07996 * 119.90606 * 0.02562 * 16 15 14 41 41 H 1.08003 * 120.08662 * 180.25024 * 17 16 15 42 42 H 0.96999 * 120.00095 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.09791 * 179.97438 * 27 18 17 44 44 H 1.07996 * 119.90730 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9735 0.4530 0.5886 7 6 4.0817 1.1762 -1.4379 8 16 4.0895 2.8542 0.7223 9 6 5.8961 2.7001 0.7758 10 6 6.4993 3.9742 1.3703 11 1 6.1170 4.1200 2.3807 12 8 6.1405 5.0946 0.5592 13 6 8.0231 3.8445 1.4148 14 8 8.5790 4.9831 2.0756 15 6 9.9293 5.0243 2.2006 16 6 10.7037 3.9805 1.6989 17 6 12.0626 4.0167 1.8162 18 6 12.6813 5.1080 2.4560 19 6 14.0867 5.1505 2.5870 20 1 14.7103 4.6042 1.8947 21 6 14.6713 5.9003 3.6131 22 7 13.9546 6.2684 4.6445 23 14 16.4748 6.3759 3.5115 24 1 17.0575 5.8419 2.2543 25 1 16.5979 7.8558 3.5240 26 1 17.2027 5.8088 4.6749 27 6 11.8908 6.1565 2.9652 28 6 10.5335 6.1078 2.8346 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.6746 1.9980 -2.0269 33 1 5.1702 1.2337 -1.4383 34 1 3.7674 0.2272 -1.8722 35 1 6.2784 2.5548 -0.2346 36 1 6.1697 1.8453 1.3941 37 1 6.4488 5.0329 -0.3553 38 1 8.2950 2.9400 1.9589 39 1 8.4128 3.7882 0.3985 40 1 10.2272 3.1425 1.2120 41 1 12.6616 3.2086 1.4231 42 1 14.3600 6.7879 5.3563 43 1 12.3576 6.9968 3.4575 44 1 9.9259 6.9108 3.2248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554233821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -173.869037 kcal Electronic energy + Delta-G solvation = -25625.191642 eV Core-core repulsion = 21633.483786 eV Total energy + Delta-G solvation = -3991.707855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62487 -40.63589 -38.86943 -37.70823 -37.57417 -35.17314 -34.56338 -32.66788 -31.58483 -30.89464 -28.86123 -28.01600 -26.43116 -25.76171 -23.66300 -22.55137 -22.33826 -22.02980 -19.25394 -19.09194 -18.77780 -18.23658 -17.66844 -17.46434 -17.36654 -17.02311 -16.63564 -16.12334 -15.74920 -15.70377 -15.42315 -15.12118 -14.80871 -14.69074 -14.34930 -14.07369 -13.93437 -13.72657 -13.59904 -13.48371 -13.16475 -13.05081 -12.95187 -12.80739 -12.78146 -12.57350 -12.35457 -12.08649 -11.89915 -11.69673 -11.64682 -11.57184 -11.28703 -11.04662 -10.86683 -10.84073 -9.54621 -8.91508 -8.77420 -8.58809 -6.21749 0.11876 0.95695 0.99441 1.04183 1.40264 1.40663 1.51621 1.55738 1.67229 2.23427 2.52392 2.73722 3.42552 3.56825 3.69078 3.71458 3.77949 3.86937 3.92071 3.94379 4.21576 4.25286 4.28240 4.30206 4.37619 4.45915 4.50846 4.61294 4.65758 4.69551 4.86015 4.93087 5.07303 5.08321 5.20319 5.23230 5.29475 5.60379 5.65508 5.89356 6.07289 6.27574 6.51939 6.57717 6.78179 6.83732 6.96331 7.11624 8.37818 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.001600 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.826475 B =17500.549653 C =17782.560610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.481 3.519 4 O -0.522 6.522 5 C -0.067 4.067 6 H 0.144 0.856 7 C -0.141 4.141 8 S -0.215 6.215 9 C -0.117 4.117 10 C 0.136 3.864 11 H 0.097 0.903 12 O -0.562 6.562 13 C 0.035 3.965 14 O -0.332 6.332 15 C 0.002 3.998 16 C -0.163 4.163 17 C -0.206 4.206 18 C 0.053 3.947 19 C -0.498 4.498 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.832 5.832 23 Si 0.981 3.019 24 H -0.257 1.257 25 H -0.267 1.267 26 H -0.267 1.267 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.388 0.612 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.108 0.892 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 -14.766 -10.724 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.323 3.677 4 O -0.410 6.410 5 C -0.197 4.197 6 H 0.162 0.838 7 C -0.199 4.199 8 S 0.013 5.987 9 C -0.265 4.265 10 C 0.075 3.925 11 H 0.114 0.886 12 O -0.369 6.369 13 C -0.042 4.042 14 O -0.248 6.248 15 C -0.042 4.042 16 C -0.181 4.181 17 C -0.226 4.226 18 C 0.051 3.949 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.459 5.459 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.173 4.173 28 C -0.155 4.155 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.237 0.763 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.010 -13.196 -9.558 26.587 hybrid contribution 1.548 -0.825 -0.474 1.817 sum -19.461 -14.021 -10.031 25.999 Atomic orbital electron populations 1.23621 0.74242 1.06043 1.02636 1.86484 1.25262 1.31742 1.83578 1.23061 0.91145 0.81699 0.71836 1.90721 1.67411 1.37331 1.45570 1.23019 0.90637 1.01354 1.04660 0.83832 1.22051 1.03350 1.04327 0.90181 1.88077 1.06209 1.21739 1.82717 1.24149 0.93231 1.01876 1.07250 1.21415 0.90417 0.84866 0.95817 0.88557 1.86666 1.80173 1.43430 1.26615 1.23456 0.93703 0.88855 0.98206 1.85876 1.18388 1.44420 1.76147 1.18663 0.81628 0.97813 1.06116 1.20719 0.94284 0.98621 1.04524 1.20816 0.94164 0.98818 1.08763 1.17969 0.94276 0.90946 0.91715 1.19742 0.92181 1.28159 1.12751 0.90493 1.26731 1.04986 0.93218 0.93130 1.69898 1.40326 1.29183 1.06537 0.85177 0.76430 0.78763 0.79437 1.18035 1.19152 1.19204 1.20886 0.92059 0.99667 1.04660 1.20007 0.94536 0.97901 1.03019 0.84525 0.92143 0.91719 0.91636 0.88649 0.89048 0.86438 0.86381 0.76267 0.90631 0.90660 0.84764 0.87428 0.90278 0.87461 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.19 10.57 -51.41 -0.54 -5.73 16 3 C 0.48 8.92 7.08 71.24 0.50 9.42 16 4 O -0.52 -13.57 15.89 21.97 0.35 -13.23 16 5 C -0.07 -0.91 3.29 29.85 0.10 -0.82 16 6 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.14 -1.27 9.08 71.98 0.65 -0.61 16 8 S -0.21 -4.26 20.10 -56.49 -1.14 -5.40 16 9 C -0.12 -1.64 5.33 71.98 0.38 -1.25 16 10 C 0.14 2.96 3.30 30.59 0.10 3.06 16 11 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 12 O -0.56 -14.08 12.90 -144.31 -1.86 -15.94 16 13 C 0.04 0.89 4.36 71.98 0.31 1.21 16 14 O -0.33 -12.71 10.09 -85.27 -0.86 -13.57 16 15 C 0.00 0.07 6.71 22.79 0.15 0.23 16 16 C -0.16 -6.79 8.97 22.11 0.20 -6.59 16 17 C -0.21 -9.78 9.74 22.48 0.22 -9.56 16 18 C 0.05 2.86 5.57 -21.28 -0.12 2.75 16 19 C -0.50 -26.80 9.04 23.40 0.21 -26.59 16 20 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 21 C 0.03 1.68 5.13 85.23 0.44 2.11 16 22 N -0.83 -44.11 10.96 21.82 0.24 -43.87 16 23 Si 0.98 38.30 29.60 68.60 2.03 40.33 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 27 C -0.15 -8.24 8.64 22.49 0.19 -8.05 16 28 C -0.14 -6.68 9.92 22.11 0.22 -6.46 16 29 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.53 6.92 -2.38 -0.02 0.51 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.12 1.06 7.14 -2.39 -0.02 1.04 16 36 H 0.12 1.20 8.14 -2.40 -0.02 1.19 16 37 H 0.39 6.70 9.05 -74.06 -0.67 6.03 16 38 H 0.08 1.72 7.63 -2.39 -0.02 1.70 16 39 H 0.08 1.64 7.66 -2.39 -0.02 1.63 16 40 H 0.13 4.37 6.27 -2.91 -0.02 4.35 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 43 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 44 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -72.65 386.41 3.33 -69.32 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.35 Total: 27.76 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 4.77 Total: -39.68 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.24 Total: -43.87 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.92 Total: -48.47 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -1.14 Total: -5.40 kcal Total: -72.65 3.33 -69.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554233821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.550 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds