Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47513 * 2 1 4 4 C 1.34224 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00175 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99500 * 179.97438 * 4 3 2 7 7 S 1.81401 * 109.46717 * 180.02562 * 6 4 3 8 8 C 1.81408 * 102.99956 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47128 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47429 * 304.99991 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99733 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99751 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.08992 * 109.47645 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47080 * 300.00136 * 1 2 3 30 30 H 1.09004 * 109.46963 * 59.99849 * 1 2 3 31 31 H 1.08991 * 109.47231 * 239.99711 * 2 1 3 32 32 H 1.09011 * 109.46819 * 119.99763 * 2 1 3 33 33 H 1.08999 * 109.47140 * 60.00859 * 6 4 3 34 34 H 1.08994 * 109.47218 * 300.00189 * 6 4 3 35 35 H 1.08992 * 109.46855 * 59.99744 * 8 7 6 36 36 H 1.09004 * 109.46647 * 299.99714 * 8 7 6 37 37 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 38 38 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 39 39 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 40 40 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 41 41 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 42 42 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 44 44 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 16 5.7323 2.8423 0.0001 8 6 6.2324 4.5860 0.0002 9 6 7.7596 4.6786 -0.0003 10 1 8.1583 4.1121 0.8413 11 8 8.2692 4.1392 -1.2216 12 6 8.1818 6.1438 0.1255 13 8 9.6039 6.2214 0.2421 14 6 10.1453 7.4595 0.3634 15 6 9.3179 8.5803 0.3639 16 6 9.8540 9.8286 0.4903 17 6 11.2487 9.9829 0.6096 18 6 11.8123 11.2716 0.7350 19 1 11.2203 12.0838 1.1303 20 6 13.1374 11.4963 0.3470 21 7 13.7423 10.6434 -0.4402 22 14 14.0434 13.0135 0.9524 23 1 14.1021 12.9958 2.4362 24 1 15.4226 13.0189 0.4020 25 1 13.3255 14.2322 0.4999 26 6 12.0784 8.8449 0.6029 27 6 11.5259 7.6033 0.4816 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5846 3.4699 0.8896 34 1 3.5853 3.4689 -0.8904 35 1 5.8386 5.0769 0.8901 36 1 5.8388 5.0769 -0.8899 37 1 7.9554 4.5955 -2.0142 38 1 7.7202 6.5801 1.0113 39 1 7.8594 6.6920 -0.7597 40 1 8.2489 8.4605 0.2682 41 1 9.2108 10.6962 0.4946 42 1 14.6613 10.7991 -0.7089 43 1 13.1490 8.9548 0.6936 44 1 12.1608 6.7297 0.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567253623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -156.878320 kcal Electronic energy + Delta-G solvation = -25127.800012 eV Core-core repulsion = 21136.828930 eV Total energy + Delta-G solvation = -3990.971082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86739 -39.09373 -37.53720 -37.12393 -36.05820 -33.34022 -32.51033 -31.71709 -30.58331 -29.79360 -29.06055 -26.85962 -24.66567 -23.92116 -22.43118 -21.66546 -20.72857 -20.63784 -18.28464 -17.61340 -17.37364 -17.28460 -16.83539 -16.52303 -16.30904 -15.79272 -15.27565 -15.17826 -14.92967 -14.44893 -14.01310 -13.88638 -13.85988 -13.59235 -13.45907 -13.02828 -12.72291 -12.64539 -12.36843 -12.27967 -12.16699 -12.12585 -11.84078 -11.43629 -11.22479 -11.11357 -11.04876 -11.00843 -10.90863 -10.64615 -10.27762 -10.13373 -10.00241 -9.85603 -9.35858 -9.03607 -7.98712 -7.66646 -7.05835 -6.73980 -4.27574 0.83472 1.70095 2.07537 2.25354 2.77223 2.92865 3.07255 3.09353 3.20864 3.76162 3.93996 4.13316 4.25108 4.37218 4.44201 4.45322 4.59894 4.66079 4.67017 4.75215 4.77064 4.98130 5.13396 5.14588 5.24477 5.24645 5.44103 5.52812 5.64743 5.88687 5.91575 6.01975 6.20274 6.70277 6.95376 7.08857 7.16346 7.22532 7.43475 7.53216 7.59060 7.76216 7.98423 8.18425 8.42109 8.62801 8.87967 8.96416 10.20494 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.047198 B = 0.001453 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.104267 B =19261.531869 C =19683.091765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.480 3.520 5 O -0.483 6.483 6 C -0.116 4.116 7 S -0.147 6.147 8 C -0.140 4.140 9 C 0.129 3.871 10 H 0.116 0.884 11 O -0.540 6.540 12 C 0.044 3.956 13 O -0.316 6.316 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.200 4.200 17 C 0.089 3.911 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.374 0.626 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.281 0.719 43 H 0.126 0.874 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.297 -14.496 -0.050 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.320 3.680 5 O -0.369 6.369 6 C -0.264 4.264 7 S 0.079 5.921 8 C -0.289 4.289 9 C 0.068 3.932 10 H 0.133 0.867 11 O -0.345 6.345 12 C -0.034 4.034 13 O -0.231 6.231 14 C -0.054 4.054 15 C -0.186 4.186 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.136 4.136 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.221 0.779 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.853 -16.355 0.221 26.503 hybrid contribution -0.975 2.392 -0.189 2.590 sum -21.829 -13.963 0.032 25.912 Atomic orbital electron populations 1.21821 0.92323 1.03210 1.03649 1.23107 0.95489 0.79569 1.02982 1.86470 1.23708 1.33028 1.84174 1.22509 0.81011 0.91163 0.73267 1.90745 1.60078 1.42329 1.43750 1.23134 0.99011 0.95630 1.08651 1.87900 0.98062 1.08042 1.98061 1.24299 1.01068 0.97198 1.06358 1.21528 0.88154 0.93787 0.89696 0.86652 1.86695 1.73136 1.59748 1.14879 1.23058 0.83556 0.95605 1.01227 1.85886 1.18958 1.27851 1.90449 1.18609 0.92612 0.82034 1.12167 1.20376 0.96815 0.93388 1.08055 1.20545 0.95505 0.94799 1.11080 1.17595 0.90674 0.93485 0.89606 1.19434 0.96408 0.95639 1.37949 0.90587 1.25877 0.97661 0.97953 0.92667 1.69828 1.12967 1.35451 1.24115 0.86381 0.78450 0.81682 0.80271 1.18866 1.20356 1.19106 1.20985 1.00278 0.90258 1.03746 1.19846 0.90907 0.97539 1.05321 0.89986 0.91368 0.91363 0.90921 0.90926 0.85966 0.85942 0.88451 0.89132 0.77924 0.92208 0.92676 0.88997 0.88780 0.90813 0.85643 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.29 37.16 0.38 -0.19 16 2 C 0.06 0.39 6.19 37.16 0.23 0.62 16 3 O -0.36 -2.88 10.22 -39.24 -0.40 -3.28 16 4 C 0.48 4.55 7.98 36.01 0.29 4.84 16 5 O -0.48 -6.22 15.61 -18.75 -0.29 -6.51 16 6 C -0.12 -0.83 6.54 36.01 0.24 -0.60 16 7 S -0.15 -1.54 20.66 -107.50 -2.22 -3.76 16 8 C -0.14 -1.21 5.60 37.16 0.21 -1.00 16 9 C 0.13 1.56 3.24 -26.73 -0.09 1.47 16 10 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 11 O -0.54 -7.25 13.06 -40.08 -0.52 -7.77 16 12 C 0.04 0.63 4.36 37.16 0.16 0.80 16 13 O -0.32 -6.33 10.09 -23.57 -0.24 -6.57 16 14 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 15 C -0.17 -3.69 8.96 -39.83 -0.36 -4.05 16 16 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 17 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 18 C -0.46 -12.24 9.04 -37.83 -0.34 -12.58 16 19 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.80 -20.58 10.96 55.54 0.61 -19.97 16 22 Si 0.91 18.56 29.59 -169.99 -5.03 13.52 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 27 C -0.12 -2.84 9.92 -39.83 -0.40 -3.24 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 32 H 0.07 0.46 8.13 -51.92 -0.42 0.03 16 33 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.37 3.66 9.04 45.56 0.41 4.07 16 38 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 39 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 40 H 0.09 1.71 6.27 -52.49 -0.33 1.38 16 41 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 42 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 43 H 0.13 3.34 6.16 -52.49 -0.32 3.02 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -32.29 389.93 -9.22 -41.51 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.66 Total: 6.85 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.34 Total: -19.90 kcal Atomic # 7 Polarization: -20.58 SS G_CDS: 0.61 Total: -19.97 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.45 Total: -24.14 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.22 Total: -3.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.29 -9.22 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567253623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.367 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds