Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47513 * 2 1 4 4 C 1.34224 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00175 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99500 * 179.97438 * 4 3 2 7 7 S 1.81401 * 109.46717 * 180.02562 * 6 4 3 8 8 C 1.81408 * 102.99956 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47128 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47429 * 304.99991 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99733 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99751 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.08992 * 109.47645 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47080 * 300.00136 * 1 2 3 30 30 H 1.09004 * 109.46963 * 59.99849 * 1 2 3 31 31 H 1.08991 * 109.47231 * 239.99711 * 2 1 3 32 32 H 1.09011 * 109.46819 * 119.99763 * 2 1 3 33 33 H 1.08999 * 109.47140 * 60.00859 * 6 4 3 34 34 H 1.08994 * 109.47218 * 300.00189 * 6 4 3 35 35 H 1.08992 * 109.46855 * 59.99744 * 8 7 6 36 36 H 1.09004 * 109.46647 * 299.99714 * 8 7 6 37 37 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 38 38 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 39 39 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 40 40 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 41 41 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 42 42 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 44 44 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 16 5.7323 2.8423 0.0001 8 6 6.2324 4.5860 0.0002 9 6 7.7596 4.6786 -0.0003 10 1 8.1583 4.1121 0.8413 11 8 8.2692 4.1392 -1.2216 12 6 8.1818 6.1438 0.1255 13 8 9.6039 6.2214 0.2421 14 6 10.1453 7.4595 0.3634 15 6 9.3179 8.5803 0.3639 16 6 9.8540 9.8286 0.4903 17 6 11.2487 9.9829 0.6096 18 6 11.8123 11.2716 0.7350 19 1 11.2203 12.0838 1.1303 20 6 13.1374 11.4963 0.3470 21 7 13.7423 10.6434 -0.4402 22 14 14.0434 13.0135 0.9524 23 1 14.1021 12.9958 2.4362 24 1 15.4226 13.0189 0.4020 25 1 13.3255 14.2322 0.4999 26 6 12.0784 8.8449 0.6029 27 6 11.5259 7.6033 0.4816 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5846 3.4699 0.8896 34 1 3.5853 3.4689 -0.8904 35 1 5.8386 5.0769 0.8901 36 1 5.8388 5.0769 -0.8899 37 1 7.9554 4.5955 -2.0142 38 1 7.7202 6.5801 1.0113 39 1 7.8594 6.6920 -0.7597 40 1 8.2489 8.4605 0.2682 41 1 9.2108 10.6962 0.4946 42 1 14.6613 10.7991 -0.7089 43 1 13.1490 8.9548 0.6936 44 1 12.1608 6.7297 0.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567253623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -176.536916 kcal Electronic energy + Delta-G solvation = -25128.652473 eV Core-core repulsion = 21136.828930 eV Total energy + Delta-G solvation = -3991.823543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56411 -40.63523 -38.86831 -37.83138 -37.57588 -35.17237 -33.00098 -32.69610 -31.59998 -31.12597 -30.88439 -28.03889 -26.43115 -24.41416 -23.58924 -22.56175 -22.38845 -22.13906 -19.25005 -19.05188 -18.77608 -18.03021 -17.92107 -17.49074 -17.31132 -17.01140 -16.56184 -16.09938 -15.82590 -15.72898 -15.49060 -15.30191 -14.75956 -14.47387 -14.20103 -14.07815 -13.98130 -13.86439 -13.53928 -13.43147 -13.34371 -13.00478 -12.92413 -12.77539 -12.64627 -12.55719 -12.39894 -12.11394 -11.76228 -11.72139 -11.59549 -11.58237 -11.28441 -11.05207 -10.93006 -10.86070 -9.54679 -8.91514 -8.74965 -8.58561 -6.21789 0.16504 0.96668 1.00595 1.04331 1.40535 1.42223 1.51331 1.55589 1.66655 2.23456 2.52446 2.74158 3.41946 3.56155 3.71474 3.78923 3.90386 3.93389 3.93521 4.00359 4.03892 4.20218 4.22839 4.30374 4.32270 4.37462 4.46602 4.55867 4.79782 4.86078 4.90470 4.93851 5.08140 5.10705 5.23151 5.29242 5.36811 5.60344 5.65464 5.89336 6.06986 6.27602 6.54904 6.57577 6.77761 6.83536 6.96223 7.11626 8.37757 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.047198 B = 0.001453 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.104267 B =19261.531869 C =19683.091765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.479 3.521 5 O -0.526 6.526 6 C -0.097 4.097 7 S -0.220 6.220 8 C -0.117 4.117 9 C 0.135 3.865 10 H 0.097 0.903 11 O -0.564 6.564 12 C 0.035 3.965 13 O -0.333 6.333 14 C 0.000 4.000 15 C -0.162 4.162 16 C -0.207 4.207 17 C 0.054 3.946 18 C -0.500 4.500 19 H 0.077 0.923 20 C 0.034 3.966 21 N -0.832 5.832 22 Si 0.981 3.019 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.259 1.259 26 C -0.153 4.153 27 C -0.135 4.135 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.388 0.612 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.108 0.892 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.974 -13.673 -0.030 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.321 3.679 5 O -0.415 6.415 6 C -0.245 4.245 7 S 0.006 5.994 8 C -0.266 4.266 9 C 0.074 3.926 10 H 0.115 0.885 11 O -0.371 6.371 12 C -0.042 4.042 13 O -0.249 6.249 14 C -0.044 4.044 15 C -0.181 4.181 16 C -0.227 4.227 17 C 0.052 3.948 18 C -0.530 4.530 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.459 5.459 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.173 4.173 27 C -0.154 4.154 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.237 0.763 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.574 -15.537 0.231 28.234 hybrid contribution -0.326 1.935 -0.231 1.976 sum -23.900 -13.602 0.000 27.499 Atomic orbital electron populations 1.21832 0.90179 1.04440 1.03892 1.23334 0.97142 0.78823 1.02661 1.86480 1.22940 1.34013 1.83671 1.23005 0.81139 0.91714 0.72005 1.90734 1.60999 1.43866 1.45859 1.23142 0.95566 0.94503 1.11310 1.88218 1.02194 1.10626 1.98341 1.24109 0.98066 0.95641 1.08744 1.21423 0.90535 0.91832 0.88790 0.88507 1.86664 1.73959 1.60494 1.15964 1.23464 0.80381 0.97602 1.02784 1.85877 1.22627 1.26268 1.90083 1.18670 0.92241 0.83473 1.09978 1.20711 0.98904 0.92081 1.06400 1.20817 0.94842 0.96383 1.10630 1.17958 0.92108 0.93830 0.90913 1.19705 0.97820 0.95886 1.39616 0.90457 1.26728 0.97967 1.01130 0.92155 1.69893 1.13520 1.37416 1.25049 0.85271 0.77281 0.77705 0.79560 1.18577 1.19455 1.18278 1.20884 0.99627 0.91194 1.05577 1.20004 0.92414 0.97144 1.05846 0.88292 0.91089 0.91071 0.91315 0.91325 0.83183 0.83125 0.86199 0.86532 0.76261 0.90389 0.90928 0.84797 0.87436 0.90253 0.87443 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 71.98 0.74 -0.11 16 2 C 0.05 0.63 6.19 71.98 0.45 1.08 16 3 O -0.35 -5.18 10.22 -51.36 -0.52 -5.71 16 4 C 0.48 8.47 7.98 71.24 0.57 9.04 16 5 O -0.53 -13.57 15.61 21.98 0.34 -13.22 16 6 C -0.10 -1.12 6.54 71.24 0.47 -0.65 16 7 S -0.22 -4.26 20.66 -56.49 -1.17 -5.42 16 8 C -0.12 -1.61 5.60 71.98 0.40 -1.21 16 9 C 0.13 2.97 3.24 30.59 0.10 3.06 16 10 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 11 O -0.56 -14.35 13.06 -144.34 -1.88 -16.23 16 12 C 0.04 0.90 4.36 71.98 0.31 1.21 16 13 O -0.33 -12.80 10.09 -85.26 -0.86 -13.66 16 14 C 0.00 0.01 6.71 22.79 0.15 0.16 16 15 C -0.16 -6.80 8.96 22.11 0.20 -6.60 16 16 C -0.21 -9.87 9.74 22.48 0.22 -9.65 16 17 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 18 C -0.50 -26.93 9.04 23.40 0.21 -26.72 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 20 C 0.03 1.73 5.13 85.23 0.44 2.17 16 21 N -0.83 -44.13 10.96 21.82 0.24 -43.89 16 22 Si 0.98 38.27 29.59 68.60 2.03 40.31 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 26 C -0.15 -8.26 8.64 22.48 0.19 -8.06 16 27 C -0.14 -6.67 9.92 22.11 0.22 -6.45 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 32 H 0.07 0.85 8.13 -2.38 -0.02 0.83 16 33 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.39 6.84 9.04 -74.06 -0.67 6.17 16 38 H 0.08 1.75 7.66 -2.39 -0.02 1.73 16 39 H 0.07 1.64 7.64 -2.39 -0.02 1.62 16 40 H 0.13 4.39 6.27 -2.91 -0.02 4.37 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.29 13.83 8.30 -92.71 -0.77 13.07 16 43 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 44 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -72.96 389.93 3.07 -69.89 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.34 Total: 27.85 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.55 Total: -39.92 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.24 Total: -43.89 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.93 Total: -48.82 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -1.17 Total: -5.42 kcal Total: -72.96 3.07 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567253623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.645 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds