Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42099 * 110.54048 * 2 1 4 4 O 1.42100 * 110.54263 * 223.24640 * 2 1 3 5 5 C 1.76202 * 104.45014 * 111.62653 * 2 1 3 6 6 C 1.38259 * 119.97707 * 89.99819 * 5 2 1 7 7 C 1.38182 * 120.02583 * 180.02562 * 6 5 2 8 8 C 1.38477 * 119.97570 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.02756 * 179.97438 * 8 7 6 10 10 C 1.38445 * 119.94740 * 359.97438 * 8 7 6 11 11 C 1.50695 * 120.01152 * 180.02562 * 10 8 7 12 12 N 1.46901 * 109.47379 * 285.00123 * 11 10 8 13 13 C 1.46895 * 111.00119 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47270 * 179.97438 * 13 12 11 15 15 H 1.09009 * 109.47154 * 54.99975 * 14 13 12 16 16 C 1.47200 * 109.47451 * 295.00037 * 14 13 12 17 17 N 7.78547 * 65.67025 * 71.84444 * 2 1 3 18 18 C 1.52996 * 109.47347 * 174.99819 * 14 13 12 19 19 C 1.50702 * 109.47159 * 185.00014 * 18 14 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 14 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 14 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.38219 * 119.97196 * 0.28094 * 10 8 7 28 28 H 1.09002 * 109.47377 * 308.37311 * 1 2 3 29 29 H 1.09001 * 109.47388 * 68.37858 * 1 2 3 30 30 H 1.09001 * 109.47042 * 188.37880 * 1 2 3 31 31 H 1.08005 * 119.99092 * 359.97438 * 6 5 2 32 32 H 1.08003 * 120.01128 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47190 * 164.99927 * 11 10 8 34 34 H 1.08996 * 109.47247 * 45.00118 * 11 10 8 35 35 H 1.00905 * 110.99468 * 303.95787 * 12 11 10 36 36 H 1.08998 * 109.47324 * 59.99878 * 13 12 11 37 37 H 1.09002 * 109.47421 * 300.00055 * 13 12 11 38 38 H 1.09004 * 109.47066 * 65.00217 * 18 14 13 39 39 H 1.08994 * 109.47405 * 305.00047 * 18 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 41 41 H 1.08003 * 119.98740 * 179.72696 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.4260 -1.9887 1.7666 7 6 2.7703 -2.4830 3.0103 8 6 2.9422 -1.6159 4.0761 9 9 3.2783 -2.0981 5.2925 10 6 2.7694 -0.2544 3.8942 11 6 2.9566 0.6907 5.0530 12 7 1.7993 0.5974 5.9529 13 6 1.9471 1.5074 7.0966 14 6 0.7252 1.3827 8.0088 15 1 0.5921 0.3400 8.2974 16 6 -0.4724 1.8500 7.2916 17 7 -1.3935 2.2105 6.7409 18 6 0.9346 2.2358 9.2614 19 6 -0.2117 2.0179 10.2151 20 1 -1.0097 1.3385 9.9541 21 6 -0.2387 2.6811 11.4237 22 7 0.7332 3.5081 11.7417 23 14 -1.6557 2.4051 12.6090 24 1 -1.3284 1.2772 13.5178 25 1 -1.8790 3.6363 13.4087 26 1 -2.8863 2.0824 11.8430 27 6 2.4198 0.2372 2.6506 28 1 -0.3634 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1498 31 1 2.2907 -2.6651 0.9355 32 1 2.9045 -3.5454 3.1511 33 1 3.0450 1.7108 4.6792 34 1 3.8624 0.4234 5.5971 35 1 0.9397 0.7778 5.4563 36 1 2.0282 2.5331 6.7367 37 1 2.8460 1.2462 7.6550 38 1 0.9790 3.2883 8.9810 39 1 1.8686 1.9489 9.7444 40 1 0.7140 3.9749 12.5918 41 1 2.2806 1.2989 2.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583452585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -69.001978 kcal Electronic energy + Delta-G solvation = -26047.152568 eV Core-core repulsion = 21968.824536 eV Total energy + Delta-G solvation = -4078.328032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.22731 -39.66936 -37.56920 -37.49265 -36.35180 -35.51690 -33.81840 -32.45488 -31.39963 -30.80010 -29.92136 -27.17740 -25.17639 -23.67609 -22.80299 -22.27854 -21.73067 -19.30431 -18.24747 -17.56680 -17.29332 -16.78031 -16.63219 -16.57581 -15.96655 -15.92102 -15.50630 -14.88895 -14.82644 -14.34664 -14.12494 -13.88280 -13.77743 -13.64841 -13.56322 -13.32763 -12.99636 -12.91390 -12.63210 -12.49390 -12.40212 -12.24903 -12.15230 -11.81231 -11.55923 -11.43046 -11.33359 -11.13578 -11.06995 -10.78881 -10.58475 -10.32459 -9.67875 -9.56567 -9.38106 -9.24781 -8.51820 -8.47888 -6.13048 -4.16331 -0.39688 0.27898 0.67884 2.40661 2.79069 3.26848 3.33773 3.37926 3.47784 3.51079 3.56816 3.65270 3.77714 4.04223 4.25286 4.31207 4.33324 4.40159 4.45976 4.60741 4.73329 4.86955 4.98886 5.19279 5.20518 5.25108 5.31475 5.42553 5.49785 5.50668 5.60164 5.63479 5.77019 6.07101 6.25154 6.31904 6.47867 6.89057 7.24993 7.39292 7.48071 7.81741 8.18982 8.32405 8.88084 9.49301 10.97832 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002231 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.584194 B =12545.693120 C =13222.222777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.504 3.496 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.679 4.679 6 C 0.005 3.995 7 C -0.180 4.180 8 C 0.185 3.815 9 F -0.115 7.115 10 C -0.139 4.139 11 C 0.096 3.904 12 N -0.687 5.687 13 C 0.067 3.933 14 C 0.006 3.994 15 H 0.111 0.889 16 C 0.242 3.758 17 N -0.476 5.476 18 C 0.033 3.967 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.010 3.990 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.339 0.661 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.438 -10.986 -22.983 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.683 3.317 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.765 4.765 6 C -0.014 4.014 7 C -0.199 4.199 8 C 0.164 3.836 9 F -0.093 7.093 10 C -0.141 4.141 11 C -0.033 4.033 12 N -0.318 5.318 13 C -0.062 4.062 14 C -0.016 4.016 15 H 0.129 0.871 16 C -0.075 4.075 17 N -0.153 5.153 18 C -0.006 4.006 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.720 3.280 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.009 4.009 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.938 -10.619 -23.903 26.618 hybrid contribution -1.044 0.205 1.639 1.954 sum 3.894 -10.414 -22.264 24.886 Atomic orbital electron populations 1.30231 1.25352 1.12316 1.12122 1.05076 0.77911 0.74622 0.74070 1.93603 1.77378 1.36388 1.85933 1.93586 1.77463 1.61719 1.60780 1.30538 1.20766 1.02928 1.22289 1.20771 0.90602 0.93144 0.96916 1.21305 1.05390 1.00832 0.92416 1.17794 0.93566 0.91673 0.80528 1.91593 1.88289 1.88254 1.41187 1.20060 1.04514 0.93195 0.96366 1.20842 0.95929 0.95896 0.90630 1.60625 1.04097 1.56589 1.10498 1.22115 0.99107 0.93925 0.91065 1.19337 0.84289 1.03070 0.94900 0.87085 1.29159 0.94432 0.92149 0.91766 1.80869 1.11404 1.10556 1.12443 1.19163 0.98539 0.94419 0.88470 1.21133 1.07110 1.26405 1.01888 0.92523 1.24957 0.96053 0.94891 0.98090 1.69937 1.32087 1.27853 1.23098 0.86581 0.82684 0.77733 0.81012 1.20413 1.21145 1.19903 1.20785 0.90266 0.99899 0.89985 0.84723 0.84887 0.84844 0.83212 0.83609 0.93170 0.89032 0.84283 0.94328 0.88739 0.95708 0.94156 0.92759 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.19 10.80 101.05 1.09 -1.09 16 2 S 2.50 16.92 5.80 -107.50 -0.62 16.29 16 3 O -0.94 -9.57 17.13 -57.54 -0.99 -10.55 16 4 O -0.94 -8.86 17.12 -57.54 -0.99 -9.84 16 5 C -0.68 -5.25 5.66 -39.58 -0.22 -5.47 16 6 C 0.00 0.03 9.47 -39.59 -0.37 -0.34 16 7 C -0.18 -1.44 10.03 -39.51 -0.40 -1.84 16 8 C 0.18 1.86 7.25 -39.42 -0.29 1.58 16 9 F -0.12 -1.33 16.76 2.25 0.04 -1.30 16 10 C -0.14 -1.38 5.40 -104.55 -0.56 -1.95 16 11 C 0.10 0.99 5.50 -4.98 -0.03 0.96 16 12 N -0.69 -8.51 6.49 -115.07 -0.75 -9.25 16 13 C 0.07 0.94 5.12 -3.83 -0.02 0.92 16 14 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 15 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 16 C 0.24 4.70 12.96 -20.89 -0.27 4.43 16 17 N -0.48 -9.96 18.51 42.01 0.78 -9.18 16 18 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 19 C -0.53 -13.85 8.60 -34.44 -0.30 -14.15 16 20 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 23 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.01 0.09 9.09 -39.59 -0.36 -0.27 16 28 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 30 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.15 0.73 7.57 -52.48 -0.40 0.34 16 32 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.05 0.47 7.95 -51.93 -0.41 0.06 16 34 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.34 4.28 7.80 -39.29 -0.31 3.97 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.15 1.12 7.52 -52.48 -0.39 0.72 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -35.05 376.13 -8.59 -43.64 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.27 Total: -1.92 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.17 Total: -15.12 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.77 Total: -42.98 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.97 Total: -20.39 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 16.92 SS G_CDS: -0.62 Total: 16.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.05 -8.59 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583452585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.364 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds