Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42099 * 110.54048 * 2 1 4 4 O 1.42100 * 110.54263 * 223.24640 * 2 1 3 5 5 C 1.76202 * 104.45014 * 111.62653 * 2 1 3 6 6 C 1.38259 * 119.97707 * 89.99819 * 5 2 1 7 7 C 1.38182 * 120.02583 * 180.02562 * 6 5 2 8 8 C 1.38477 * 119.97570 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.02756 * 179.97438 * 8 7 6 10 10 C 1.38445 * 119.94740 * 359.97438 * 8 7 6 11 11 C 1.50695 * 120.01152 * 180.02562 * 10 8 7 12 12 N 1.46901 * 109.47379 * 285.00123 * 11 10 8 13 13 C 1.46895 * 111.00119 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47270 * 179.97438 * 13 12 11 15 15 H 1.09009 * 109.47154 * 54.99975 * 14 13 12 16 16 C 1.47200 * 109.47451 * 295.00037 * 14 13 12 17 17 N 7.78547 * 65.67025 * 71.84444 * 2 1 3 18 18 C 1.52996 * 109.47347 * 174.99819 * 14 13 12 19 19 C 1.50702 * 109.47159 * 185.00014 * 18 14 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 14 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 14 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.38219 * 119.97196 * 0.28094 * 10 8 7 28 28 H 1.09002 * 109.47377 * 308.37311 * 1 2 3 29 29 H 1.09001 * 109.47388 * 68.37858 * 1 2 3 30 30 H 1.09001 * 109.47042 * 188.37880 * 1 2 3 31 31 H 1.08005 * 119.99092 * 359.97438 * 6 5 2 32 32 H 1.08003 * 120.01128 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47190 * 164.99927 * 11 10 8 34 34 H 1.08996 * 109.47247 * 45.00118 * 11 10 8 35 35 H 1.00905 * 110.99468 * 303.95787 * 12 11 10 36 36 H 1.08998 * 109.47324 * 59.99878 * 13 12 11 37 37 H 1.09002 * 109.47421 * 300.00055 * 13 12 11 38 38 H 1.09004 * 109.47066 * 65.00217 * 18 14 13 39 39 H 1.08994 * 109.47405 * 305.00047 * 18 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 41 41 H 1.08003 * 119.98740 * 179.72696 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.4260 -1.9887 1.7666 7 6 2.7703 -2.4830 3.0103 8 6 2.9422 -1.6159 4.0761 9 9 3.2783 -2.0981 5.2925 10 6 2.7694 -0.2544 3.8942 11 6 2.9566 0.6907 5.0530 12 7 1.7993 0.5974 5.9529 13 6 1.9471 1.5074 7.0966 14 6 0.7252 1.3827 8.0088 15 1 0.5921 0.3400 8.2974 16 6 -0.4724 1.8500 7.2916 17 7 -1.3935 2.2105 6.7409 18 6 0.9346 2.2358 9.2614 19 6 -0.2117 2.0179 10.2151 20 1 -1.0097 1.3385 9.9541 21 6 -0.2387 2.6811 11.4237 22 7 0.7332 3.5081 11.7417 23 14 -1.6557 2.4051 12.6090 24 1 -1.3284 1.2772 13.5178 25 1 -1.8790 3.6363 13.4087 26 1 -2.8863 2.0824 11.8430 27 6 2.4198 0.2372 2.6506 28 1 -0.3634 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1498 31 1 2.2907 -2.6651 0.9355 32 1 2.9045 -3.5454 3.1511 33 1 3.0450 1.7108 4.6792 34 1 3.8624 0.4234 5.5971 35 1 0.9397 0.7778 5.4563 36 1 2.0282 2.5331 6.7367 37 1 2.8460 1.2462 7.6550 38 1 0.9790 3.2883 8.9810 39 1 1.8686 1.9489 9.7444 40 1 0.7140 3.9749 12.5918 41 1 2.2806 1.2989 2.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583452585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -93.699818 kcal Electronic energy + Delta-G solvation = -26048.223547 eV Core-core repulsion = 21968.824536 eV Total energy + Delta-G solvation = -4079.399011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.00694 -40.34142 -38.88927 -38.15593 -36.99943 -36.74984 -35.52838 -33.89524 -32.14340 -31.87919 -30.24142 -28.64809 -26.38453 -24.32299 -24.09699 -23.59643 -22.84230 -19.89278 -18.93755 -18.53273 -18.30760 -18.17428 -17.93115 -17.15880 -16.82170 -16.74303 -16.58466 -16.34290 -15.64747 -15.51168 -14.97642 -14.84999 -14.51738 -14.40827 -14.35192 -14.26630 -13.98849 -13.93217 -13.88773 -13.55989 -13.41153 -13.19950 -13.13817 -13.05956 -13.02481 -12.67442 -12.50636 -12.38082 -12.16397 -12.11417 -11.97572 -11.71358 -11.42069 -11.18194 -10.55650 -10.21777 -10.07340 -9.48616 -8.20447 -6.28620 -0.89015 -0.37694 0.03683 1.39853 1.41485 1.50504 1.88373 1.94544 1.96764 2.15141 2.40779 2.98552 3.07240 3.11166 3.14783 3.23987 3.24989 3.56210 3.63276 4.02305 4.06104 4.11073 4.13327 4.24262 4.38271 4.41809 4.51247 4.65406 4.72093 4.79166 4.90318 4.92357 4.96687 4.98612 4.99153 5.06835 5.46475 5.60964 5.66621 5.78238 5.87969 6.19371 6.25052 6.73561 6.86369 7.40011 8.90444 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002231 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.584194 B =12545.693120 C =13222.222777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.514 3.486 3 O -0.977 6.977 4 O -0.968 6.968 5 C -0.677 4.677 6 C 0.005 3.995 7 C -0.178 4.178 8 C 0.162 3.838 9 F -0.130 7.130 10 C -0.150 4.150 11 C 0.096 3.904 12 N -0.688 5.688 13 C 0.078 3.922 14 C 0.018 3.982 15 H 0.120 0.880 16 C 0.251 3.749 17 N -0.500 5.500 18 C 0.038 3.962 19 C -0.539 4.539 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.275 1.275 27 C 0.001 3.999 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.338 0.662 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.002 0.998 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -12.207 -24.113 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.696 3.304 3 O -0.974 6.974 4 O -0.966 6.966 5 C -0.763 4.763 6 C -0.014 4.014 7 C -0.198 4.198 8 C 0.142 3.858 9 F -0.108 7.108 10 C -0.153 4.153 11 C -0.032 4.032 12 N -0.319 5.319 13 C -0.051 4.051 14 C -0.003 4.003 15 H 0.138 0.862 16 C -0.065 4.065 17 N -0.178 5.178 18 C 0.000 4.000 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.775 3.225 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.019 4.019 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.192 0.808 32 H 0.184 0.816 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.021 0.979 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.026 -11.856 -25.035 27.991 hybrid contribution -0.793 0.562 1.907 2.140 sum 3.233 -11.293 -23.128 25.940 Atomic orbital electron populations 1.30092 1.20129 1.14390 1.13849 1.04693 0.79603 0.73083 0.73006 1.93551 1.79570 1.38059 1.86221 1.93544 1.79444 1.62144 1.61446 1.30707 1.20161 1.03170 1.22250 1.21131 0.89562 0.93353 0.97343 1.21581 1.04451 1.01711 0.92027 1.18067 0.94913 0.92187 0.80655 1.91553 1.88706 1.88410 1.42100 1.20049 1.05490 0.93163 0.96556 1.20860 0.94985 0.96772 0.90602 1.60570 1.04830 1.55912 1.10618 1.21941 0.97386 0.94564 0.91255 1.19202 0.85256 1.02221 0.93661 0.86183 1.29439 0.94291 0.91493 0.91267 1.80866 1.12203 1.11272 1.13426 1.18982 0.97164 0.93937 0.89961 1.21553 1.07867 1.25762 1.02560 0.92822 1.25718 0.98268 0.94937 0.99894 1.70032 1.33710 1.28912 1.23666 0.85684 0.79785 0.77874 0.79170 1.19256 1.20999 1.20039 1.20933 0.90418 1.00587 0.89926 0.83580 0.82867 0.82520 0.80763 0.81595 0.92122 0.88968 0.84409 0.94112 0.87648 0.97936 0.94619 0.92704 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.15 10.80 113.37 1.22 -0.93 16 2 S 2.51 30.37 5.80 -56.49 -0.33 30.04 16 3 O -0.98 -19.52 17.13 -127.65 -2.19 -21.71 16 4 O -0.97 -17.07 17.12 -127.65 -2.19 -19.25 16 5 C -0.68 -9.48 5.66 22.27 0.13 -9.36 16 6 C 0.00 0.06 9.47 22.26 0.21 0.27 16 7 C -0.18 -2.58 10.03 22.31 0.22 -2.35 16 8 C 0.16 3.14 7.25 22.38 0.16 3.30 16 9 F -0.13 -2.95 16.76 44.97 0.75 -2.20 16 10 C -0.15 -2.88 5.40 -19.82 -0.11 -2.98 16 11 C 0.10 1.91 5.50 85.56 0.47 2.38 16 12 N -0.69 -16.34 6.49 -517.96 -3.36 -19.70 16 13 C 0.08 2.10 5.12 86.30 0.44 2.54 16 14 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 15 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 16 C 0.25 9.62 12.96 89.49 1.16 10.78 16 17 N -0.50 -20.63 18.51 19.96 0.37 -20.26 16 18 C 0.04 1.74 4.42 29.85 0.13 1.87 16 19 C -0.54 -28.30 8.60 25.60 0.22 -28.08 16 20 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 21 C 0.01 0.59 5.46 84.66 0.46 1.05 16 22 N -0.92 -52.72 13.29 21.45 0.28 -52.43 16 23 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.00 0.01 9.09 22.26 0.20 0.21 16 28 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.18 1.25 7.57 -2.91 -0.02 1.23 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.06 1.07 7.95 -2.39 -0.02 1.06 16 34 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.34 8.17 7.80 -89.69 -0.70 7.47 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 41 H 0.16 2.25 7.52 -2.91 -0.02 2.23 16 Total: -1.00 -75.12 376.13 0.64 -74.48 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.37 Total: 6.52 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.90 Total: -20.67 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -2.71 Total: -92.39 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -4.37 Total: -40.96 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.75 Total: -2.20 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 30.37 SS G_CDS: -0.33 Total: 30.04 kcal Total: -75.12 0.64 -74.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583452585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.221 kcal (2) G-P(sol) polarization free energy of solvation -75.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds