Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47390 * 2 1 4 4 S 1.81406 * 109.46959 * 119.99698 * 2 1 3 5 5 O 1.42099 * 108.57449 * 70.51559 * 4 2 1 6 6 O 1.42101 * 108.58076 * 299.48910 * 4 2 1 7 7 C 1.81406 * 101.92228 * 184.99906 * 4 2 1 8 8 C 1.52994 * 109.46943 * 180.02562 * 7 4 2 9 9 C 1.53006 * 109.46721 * 180.02562 * 8 7 4 10 10 O 1.45201 * 109.46867 * 179.97438 * 9 8 7 11 11 C 1.34804 * 116.99925 * 179.97438 * 10 9 8 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33435 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00819 * 145.73608 * 19 18 17 21 21 C 1.40300 * 119.99625 * 325.73972 * 19 18 17 22 22 N 1.30615 * 120.00178 * 339.67941 * 21 19 18 23 23 Si 1.86801 * 120.00058 * 159.68932 * 21 19 18 24 24 H 1.48493 * 109.47173 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46636 * 299.99423 * 23 21 19 26 26 H 1.48494 * 109.47212 * 59.99337 * 23 21 19 27 27 H 1.09002 * 109.47146 * 300.00051 * 1 2 3 28 28 H 1.09004 * 109.46850 * 59.99943 * 1 2 3 29 29 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47665 * 239.99731 * 2 1 3 31 31 H 1.09002 * 109.47018 * 59.99870 * 3 2 1 32 32 H 1.09001 * 109.47606 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47150 * 299.99750 * 3 2 1 34 34 H 1.09003 * 109.46453 * 60.00073 * 7 4 2 35 35 H 1.09002 * 109.47094 * 300.00571 * 7 4 2 36 36 H 1.08999 * 109.47133 * 60.00590 * 8 7 4 37 37 H 1.09002 * 109.47577 * 300.00135 * 8 7 4 38 38 H 1.08999 * 109.47037 * 60.00284 * 9 8 7 39 39 H 1.09000 * 109.47230 * 299.99749 * 9 8 7 40 40 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 41 41 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 42 42 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 44 44 H 0.97001 * 119.99911 * 355.29856 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8619 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6285 7 6 3.9266 -0.6031 1.3542 8 6 4.6209 -1.2701 2.5432 9 6 6.1323 -1.0570 2.4363 10 8 6.7912 -1.6894 3.5651 11 6 8.1347 -1.5941 3.6215 12 8 8.7387 -0.9991 2.7509 13 6 8.8707 -2.2120 4.7377 14 6 8.1798 -2.8029 5.7931 15 6 8.8745 -3.3765 6.8411 16 6 10.2629 -3.3769 6.8548 17 6 10.9733 -2.8053 5.8244 18 6 10.2906 -2.2136 4.7457 19 6 11.0085 -1.6252 3.6861 20 1 10.6211 -1.6729 2.6792 21 6 12.2269 -0.9772 3.9389 22 7 12.5099 -0.5663 5.1460 23 14 13.4443 -0.7017 2.5491 24 1 14.6437 -0.0007 3.0734 25 1 13.8466 -2.0116 1.9768 26 1 12.8099 0.1264 1.4923 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 4.1444 0.4649 1.3580 35 1 4.2907 -1.0449 0.4266 36 1 4.4030 -2.3381 2.5389 37 1 4.2568 -0.8287 3.4710 38 1 6.3498 0.0110 2.4409 39 1 6.4967 -1.4982 1.5086 40 1 7.0998 -2.8094 5.7943 41 1 8.3319 -3.8293 7.6577 42 1 10.7898 -3.8299 7.6815 43 1 12.0531 -2.8108 5.8435 44 1 11.8508 -0.6475 5.8530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758931469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -158.745480 kcal Electronic energy + Delta-G solvation = -26682.918725 eV Core-core repulsion = 22691.866677 eV Total energy + Delta-G solvation = -3991.052048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -39.51192 -37.59250 -37.31400 -36.36072 -35.78890 -35.54505 -34.22421 -33.84676 -30.25344 -29.49697 -28.28012 -26.96160 -25.36350 -23.38262 -22.74076 -21.69169 -21.08271 -19.91157 -19.03933 -18.07070 -17.50774 -16.87784 -16.61683 -16.25743 -15.93622 -15.59257 -15.17496 -14.79930 -14.49245 -14.17560 -13.99434 -13.88955 -13.69688 -13.47554 -12.99586 -12.91059 -12.77112 -12.67743 -12.37611 -12.36044 -12.27318 -12.07144 -11.94994 -11.92995 -11.57970 -11.34492 -11.21044 -11.02640 -10.98554 -10.77998 -10.53759 -10.44950 -10.26505 -10.00520 -9.78360 -9.17828 -8.93626 -7.89587 -7.71741 -7.30623 -4.61535 -0.40463 2.05258 2.37173 2.68578 3.11495 3.12743 3.23504 3.33208 3.50397 3.59990 3.74168 3.94519 4.02235 4.07509 4.39542 4.46951 4.50772 4.55190 4.81530 4.93586 5.01419 5.05071 5.09901 5.23192 5.28109 5.33356 5.44923 5.49169 5.52489 5.75960 5.78906 5.97370 6.03288 6.17555 6.43885 6.69103 6.88687 7.12896 7.26797 7.43624 7.52091 7.68470 7.77133 8.01476 8.09714 8.57244 8.69111 8.96143 9.90362 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002337 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.930358 B =11975.894633 C =13260.422044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.576 4.576 3 C -0.149 4.149 4 S 2.419 3.581 5 O -0.935 6.935 6 O -0.931 6.931 7 C -0.612 4.612 8 C -0.111 4.111 9 C 0.078 3.922 10 O -0.370 6.370 11 C 0.505 3.495 12 O -0.515 6.515 13 C -0.256 4.256 14 C -0.023 4.023 15 C -0.260 4.260 16 C -0.070 4.070 17 C -0.201 4.201 18 C 0.122 3.878 19 C -0.465 4.465 20 H 0.104 0.896 21 C 0.032 3.968 22 N -0.784 5.784 23 Si 1.071 2.929 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.272 1.272 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 3.015 -10.038 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.686 4.686 3 C -0.207 4.207 4 S 2.601 3.399 5 O -0.933 6.933 6 O -0.928 6.928 7 C -0.740 4.740 8 C -0.149 4.149 9 C 0.002 3.998 10 O -0.289 6.289 11 C 0.355 3.645 12 O -0.406 6.406 13 C -0.259 4.259 14 C -0.041 4.041 15 C -0.279 4.279 16 C -0.088 4.088 17 C -0.220 4.220 18 C 0.117 3.883 19 C -0.491 4.491 20 H 0.122 0.878 21 C -0.191 4.191 22 N -0.406 5.406 23 Si 0.894 3.106 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.198 1.198 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.888 3.387 -9.965 19.058 hybrid contribution -1.123 -0.132 -0.413 1.204 sum -17.011 3.255 -10.379 20.191 Atomic orbital electron populations 1.21633 0.89816 1.03884 1.04742 1.30067 1.07205 1.09861 1.21422 1.21783 1.01780 0.92067 1.05069 1.08274 0.78143 0.76032 0.77496 1.93595 1.83223 1.29865 1.86572 1.93586 1.78369 1.75504 1.45389 1.30321 1.24536 1.11183 1.07981 1.21197 0.95152 1.02350 0.96244 1.22621 0.90046 0.98137 0.89016 1.86565 1.23561 1.72043 1.46766 1.21330 0.78726 0.78263 0.86149 1.90735 1.67931 1.41899 1.40020 1.18670 0.92799 1.17131 0.97251 1.20926 0.97958 0.92886 0.92376 1.20344 0.93953 1.12553 1.01075 1.20815 0.94142 0.97141 0.96749 1.21198 0.98762 1.04860 0.97134 1.17465 0.89492 0.89624 0.91690 1.21189 1.03342 1.27118 0.97493 0.87833 1.27325 0.98212 0.92538 1.01039 1.70387 1.38391 1.29197 1.02670 0.83548 0.75179 0.77982 0.73930 1.19748 1.19797 1.19754 0.90589 0.90059 0.90942 0.84499 0.90311 0.90878 0.90192 0.84382 0.84524 0.89113 0.89067 0.91469 0.91484 0.87700 0.88489 0.88571 0.87295 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.58 -3.12 3.35 -26.73 -0.09 -3.21 16 3 C -0.15 -0.67 8.90 37.16 0.33 -0.34 16 4 S 2.42 21.35 4.26 -107.50 -0.46 20.90 16 5 O -0.94 -11.53 18.10 -57.83 -1.05 -12.58 16 6 O -0.93 -11.21 18.06 -57.83 -1.04 -12.26 16 7 C -0.61 -4.78 5.20 37.15 0.19 -4.58 16 8 C -0.11 -1.32 5.60 -26.73 -0.15 -1.47 16 9 C 0.08 1.19 5.48 37.16 0.20 1.40 16 10 O -0.37 -7.41 9.48 -40.78 -0.39 -7.79 16 11 C 0.50 12.07 7.85 34.41 0.27 12.34 16 12 O -0.52 -13.27 13.38 -19.28 -0.26 -13.53 16 13 C -0.26 -6.37 5.92 -104.39 -0.62 -6.99 16 14 C -0.02 -0.51 9.60 -39.20 -0.38 -0.89 16 15 C -0.26 -5.52 10.03 -39.37 -0.39 -5.91 16 16 C -0.07 -1.52 10.01 -39.59 -0.40 -1.92 16 17 C -0.20 -4.90 7.90 -38.88 -0.31 -5.21 16 18 C 0.12 3.20 5.16 -106.54 -0.55 2.65 16 19 C -0.47 -12.47 7.62 -37.81 -0.29 -12.76 16 20 H 0.10 2.87 5.99 -52.49 -0.31 2.56 16 21 C 0.03 0.80 5.01 -17.29 -0.09 0.71 16 22 N -0.78 -20.41 12.60 55.57 0.70 -19.71 16 23 Si 1.07 21.67 29.98 -169.99 -5.10 16.58 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.23 6.39 -51.93 -0.33 -0.11 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.14 0.77 6.77 -51.92 -0.35 0.42 16 35 H 0.14 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 2.09 7.61 -52.49 -0.40 1.69 16 41 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.68 6.99 -52.49 -0.37 2.32 16 44 H 0.30 8.00 6.62 -40.82 -0.27 7.73 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -34.21 380.04 -10.11 -44.32 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.33 Total: 4.99 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -1.92 Total: -26.63 kcal Atomic # 7 Polarization: -20.41 SS G_CDS: 0.70 Total: -19.71 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -2.74 Total: -46.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.10 Total: 16.58 kcal Atomic # 16 Polarization: 21.35 SS G_CDS: -0.46 Total: 20.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.21 -10.11 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758931469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.429 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds