Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47390 * 2 1 4 4 S 1.81406 * 109.46959 * 119.99698 * 2 1 3 5 5 O 1.42099 * 108.57449 * 70.51559 * 4 2 1 6 6 O 1.42101 * 108.58076 * 299.48910 * 4 2 1 7 7 C 1.81406 * 101.92228 * 184.99906 * 4 2 1 8 8 C 1.52994 * 109.46943 * 180.02562 * 7 4 2 9 9 C 1.53006 * 109.46721 * 180.02562 * 8 7 4 10 10 O 1.45201 * 109.46867 * 179.97438 * 9 8 7 11 11 C 1.34804 * 116.99925 * 179.97438 * 10 9 8 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33435 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00819 * 145.73608 * 19 18 17 21 21 C 1.40300 * 119.99625 * 325.73972 * 19 18 17 22 22 N 1.30615 * 120.00178 * 339.67941 * 21 19 18 23 23 Si 1.86801 * 120.00058 * 159.68932 * 21 19 18 24 24 H 1.48493 * 109.47173 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46636 * 299.99423 * 23 21 19 26 26 H 1.48494 * 109.47212 * 59.99337 * 23 21 19 27 27 H 1.09002 * 109.47146 * 300.00051 * 1 2 3 28 28 H 1.09004 * 109.46850 * 59.99943 * 1 2 3 29 29 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47665 * 239.99731 * 2 1 3 31 31 H 1.09002 * 109.47018 * 59.99870 * 3 2 1 32 32 H 1.09001 * 109.47606 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47150 * 299.99750 * 3 2 1 34 34 H 1.09003 * 109.46453 * 60.00073 * 7 4 2 35 35 H 1.09002 * 109.47094 * 300.00571 * 7 4 2 36 36 H 1.08999 * 109.47133 * 60.00590 * 8 7 4 37 37 H 1.09002 * 109.47577 * 300.00135 * 8 7 4 38 38 H 1.08999 * 109.47037 * 60.00284 * 9 8 7 39 39 H 1.09000 * 109.47230 * 299.99749 * 9 8 7 40 40 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 41 41 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 42 42 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 44 44 H 0.97001 * 119.99911 * 355.29856 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8619 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6285 7 6 3.9266 -0.6031 1.3542 8 6 4.6209 -1.2701 2.5432 9 6 6.1323 -1.0570 2.4363 10 8 6.7912 -1.6894 3.5651 11 6 8.1347 -1.5941 3.6215 12 8 8.7387 -0.9991 2.7509 13 6 8.8707 -2.2120 4.7377 14 6 8.1798 -2.8029 5.7931 15 6 8.8745 -3.3765 6.8411 16 6 10.2629 -3.3769 6.8548 17 6 10.9733 -2.8053 5.8244 18 6 10.2906 -2.2136 4.7457 19 6 11.0085 -1.6252 3.6861 20 1 10.6211 -1.6729 2.6792 21 6 12.2269 -0.9772 3.9389 22 7 12.5099 -0.5663 5.1460 23 14 13.4443 -0.7017 2.5491 24 1 14.6437 -0.0007 3.0734 25 1 13.8466 -2.0116 1.9768 26 1 12.8099 0.1264 1.4923 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 4.1444 0.4649 1.3580 35 1 4.2907 -1.0449 0.4266 36 1 4.4030 -2.3381 2.5389 37 1 4.2568 -0.8287 3.4710 38 1 6.3498 0.0110 2.4409 39 1 6.4967 -1.4982 1.5086 40 1 7.0998 -2.8094 5.7943 41 1 8.3319 -3.8293 7.6577 42 1 10.7898 -3.8299 7.6815 43 1 12.0531 -2.8108 5.8435 44 1 11.8508 -0.6475 5.8530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758931469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -180.202842 kcal Electronic energy + Delta-G solvation = -26683.849187 eV Core-core repulsion = 22691.866677 eV Total energy + Delta-G solvation = -3991.982509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27114 -39.36104 -38.10533 -37.45216 -37.12206 -35.99861 -35.90302 -35.12115 -32.06044 -31.33764 -28.96252 -27.86326 -27.12865 -24.70484 -23.74399 -22.95365 -22.59829 -21.66191 -19.93567 -19.74496 -18.54198 -18.17470 -17.71459 -17.45509 -17.00472 -16.79976 -16.57492 -16.07106 -15.84875 -15.66101 -15.36834 -15.11970 -14.54258 -14.33509 -14.23401 -14.08885 -14.02585 -13.78577 -13.69467 -13.22529 -13.19941 -13.07066 -13.04060 -12.83553 -12.74086 -12.53551 -12.50516 -12.33810 -12.24268 -12.09620 -11.97529 -11.80339 -11.58765 -11.48927 -11.10702 -11.00813 -10.78591 -9.74984 -9.59107 -9.23773 -6.58307 -1.06826 0.19679 0.86010 1.47165 1.61313 1.74740 1.77417 1.82419 1.89844 2.28005 2.63185 2.64945 2.99873 3.43810 3.53551 3.57112 3.59843 3.74663 3.78060 4.14072 4.18406 4.19972 4.27203 4.32364 4.44420 4.51039 4.60723 4.64698 4.69177 4.72162 4.75406 4.86456 4.87709 4.90635 5.04206 5.11283 5.23865 5.33153 5.47043 5.58457 5.66108 5.79360 5.89848 6.12471 6.24197 6.66527 6.75986 7.14191 7.94475 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002337 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.930358 B =11975.894633 C =13260.422044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.548 4.548 3 C -0.160 4.160 4 S 2.411 3.589 5 O -0.980 6.980 6 O -0.974 6.974 7 C -0.606 4.606 8 C -0.113 4.113 9 C 0.068 3.932 10 O -0.370 6.370 11 C 0.504 3.496 12 O -0.542 6.542 13 C -0.281 4.281 14 C -0.028 4.028 15 C -0.247 4.247 16 C -0.062 4.062 17 C -0.222 4.222 18 C 0.099 3.901 19 C -0.504 4.504 20 H 0.084 0.916 21 C 0.000 4.000 22 N -0.803 5.803 23 Si 1.117 2.883 24 H -0.264 1.264 25 H -0.258 1.258 26 H -0.268 1.268 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.168 0.832 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 3.139 -11.037 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.661 4.661 3 C -0.218 4.218 4 S 2.599 3.401 5 O -0.977 6.977 6 O -0.971 6.971 7 C -0.735 4.735 8 C -0.152 4.152 9 C -0.007 4.007 10 O -0.288 6.288 11 C 0.356 3.644 12 O -0.435 6.435 13 C -0.284 4.284 14 C -0.046 4.046 15 C -0.265 4.265 16 C -0.081 4.081 17 C -0.241 4.241 18 C 0.095 3.905 19 C -0.530 4.530 20 H 0.102 0.898 21 C -0.217 4.217 22 N -0.426 5.426 23 Si 0.933 3.067 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.193 1.193 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.185 0.815 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.182 0.818 35 H 0.184 0.816 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.116 0.884 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.965 3.470 -10.906 20.464 hybrid contribution -1.063 -0.209 -0.064 1.085 sum -18.027 3.261 -10.970 21.353 Atomic orbital electron populations 1.21807 0.89889 1.04084 1.05632 1.29839 1.07015 1.10197 1.19038 1.21961 1.03079 0.91039 1.05675 1.08234 0.78350 0.75199 0.78347 1.93537 1.83969 1.32694 1.87486 1.93529 1.79221 1.75772 1.48588 1.30285 1.22985 1.12805 1.07459 1.21217 0.92770 1.02910 0.98267 1.23049 0.91748 0.98156 0.87735 1.86518 1.21510 1.72155 1.48620 1.21293 0.79908 0.77643 0.85588 1.90709 1.68908 1.42948 1.40899 1.19072 0.92950 1.17683 0.98672 1.21243 0.99270 0.92309 0.91812 1.20851 0.93870 1.10543 1.01278 1.21235 0.94769 0.95490 0.96581 1.21202 0.98500 1.06254 0.98113 1.17849 0.90538 0.89716 0.92386 1.21165 1.05085 1.29862 0.96926 0.89780 1.28585 0.99369 0.91278 1.02482 1.70497 1.38008 1.31151 1.02973 0.83012 0.73477 0.78724 0.71459 1.18778 1.18194 1.19255 0.91214 0.87684 0.91227 0.81466 0.90970 0.89130 0.88371 0.81755 0.81574 0.89330 0.89340 0.91024 0.90865 0.85353 0.84505 0.85038 0.88393 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.55 -4.41 3.35 30.59 0.10 -4.30 16 3 C -0.16 -0.90 8.90 71.98 0.64 -0.26 16 4 S 2.41 40.28 4.26 -56.49 -0.24 40.04 16 5 O -0.98 -24.07 18.10 -127.37 -2.30 -26.38 16 6 O -0.97 -23.60 18.06 -127.37 -2.30 -25.90 16 7 C -0.61 -8.16 5.20 71.98 0.37 -7.79 16 8 C -0.11 -2.58 5.60 30.59 0.17 -2.41 16 9 C 0.07 2.05 5.48 71.98 0.39 2.44 16 10 O -0.37 -14.76 9.48 -57.15 -0.54 -15.31 16 11 C 0.50 24.57 7.85 70.20 0.55 25.12 16 12 O -0.54 -28.78 13.38 19.75 0.26 -28.51 16 13 C -0.28 -14.18 5.92 -19.71 -0.12 -14.30 16 14 C -0.03 -1.21 9.60 22.52 0.22 -0.99 16 15 C -0.25 -9.74 10.03 22.41 0.22 -9.52 16 16 C -0.06 -2.60 10.01 22.26 0.22 -2.38 16 17 C -0.22 -10.97 7.90 22.72 0.18 -10.79 16 18 C 0.10 5.35 5.16 -21.10 -0.11 5.24 16 19 C -0.50 -28.14 7.62 23.41 0.18 -27.96 16 20 H 0.08 4.91 5.99 -2.91 -0.02 4.89 16 21 C 0.00 -0.01 5.01 85.38 0.43 0.42 16 22 N -0.80 -43.21 12.60 21.89 0.28 -42.93 16 23 Si 1.12 44.46 29.98 68.60 2.06 46.51 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 26 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.20 6.39 -2.39 -0.02 0.19 16 33 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.16 1.33 6.77 -2.39 -0.02 1.32 16 35 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.13 4.85 7.61 -2.91 -0.02 4.82 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.10 4.97 6.99 -2.91 -0.02 4.95 16 44 H 0.29 15.86 6.62 -92.71 -0.61 15.24 16 Total: -1.00 -78.20 380.04 2.48 -75.72 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 1.15 Total: 24.98 kcal Atomic # 6 Polarization: -52.34 SS G_CDS: 4.12 Total: -48.22 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.28 Total: -42.93 kcal Atomic # 8 Polarization: -91.22 SS G_CDS: -4.88 Total: -96.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.06 Total: 46.51 kcal Atomic # 16 Polarization: 40.28 SS G_CDS: -0.24 Total: 40.04 kcal Total: -78.20 2.48 -75.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758931469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.483 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds