Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46498 * 2 1 4 4 C 1.52997 * 109.47350 * 120.00075 * 2 1 3 5 5 C 1.52998 * 109.47350 * 185.00187 * 4 2 1 6 6 S 1.81400 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81406 * 101.92058 * 180.02562 * 6 5 4 8 8 O 1.42108 * 108.57790 * 294.48576 * 6 5 4 9 9 O 1.42100 * 108.58096 * 65.51354 * 6 5 4 10 10 O 1.45204 * 109.47321 * 240.00750 * 2 1 3 11 11 C 1.34222 * 117.00501 * 89.99446 * 10 2 1 12 12 O 1.20828 * 119.99928 * 0.02562 * 11 10 2 13 13 C 1.50692 * 120.00308 * 179.97438 * 11 10 2 14 14 C 1.50701 * 109.47387 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.12763 * 265.00207 * 14 13 11 16 16 C 1.38615 * 120.24345 * 179.74505 * 15 14 13 17 17 C 1.38651 * 120.50409 * 0.25778 * 16 15 14 18 18 C 1.37593 * 120.25207 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.12583 * 85.27773 * 14 13 11 20 20 C 1.41393 * 120.24499 * 359.97438 * 19 14 13 21 21 H 1.08002 * 120.00158 * 330.03012 * 20 19 14 22 22 C 1.39946 * 120.00148 * 150.03881 * 20 19 14 23 23 N 1.30819 * 120.00428 * 162.08378 * 22 20 19 24 24 Si 1.86804 * 119.99667 * 342.07987 * 22 20 19 25 25 H 1.48500 * 109.46965 * 95.39321 * 24 22 20 26 26 H 1.48497 * 109.46929 * 215.39142 * 24 22 20 27 27 H 1.48498 * 109.47070 * 335.39263 * 24 22 20 28 28 H 1.08996 * 109.47394 * 299.99804 * 1 2 3 29 29 H 1.09006 * 109.46899 * 60.00058 * 1 2 3 30 30 H 1.09005 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47048 * 305.00473 * 4 2 1 32 32 H 1.09004 * 109.46817 * 64.99902 * 4 2 1 33 33 H 1.09000 * 109.47278 * 300.00145 * 5 4 2 34 34 H 1.09002 * 109.46730 * 60.00404 * 5 4 2 35 35 H 1.09001 * 109.46857 * 59.99946 * 7 6 5 36 36 H 1.08999 * 109.46645 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46963 * 299.99881 * 7 6 5 38 38 H 1.09001 * 109.46878 * 60.00305 * 13 11 10 39 39 H 1.09003 * 109.47548 * 300.00425 * 13 11 10 40 40 H 1.07997 * 119.87746 * 0.02562 * 15 14 13 41 41 H 1.08003 * 119.74582 * 180.22978 * 16 15 14 42 42 H 1.08000 * 119.87473 * 179.97438 * 17 16 15 43 43 H 1.07995 * 120.13235 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00567 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 16 4.1696 -1.4691 2.7944 7 6 5.9615 -1.2162 2.6678 8 8 3.6954 -0.7781 3.9420 9 8 3.8969 -2.8570 2.6582 10 8 2.0141 -0.6843 -1.1857 11 6 2.2172 0.0641 -2.2811 12 8 1.9982 1.2520 -2.2503 13 6 2.7194 -0.5767 -3.5492 14 6 2.8622 0.4735 -4.6205 15 6 1.8429 0.6850 -5.5209 16 6 1.9696 1.6540 -6.5040 17 6 3.1238 2.4168 -6.5957 18 6 4.1578 2.2187 -5.7099 19 6 4.0404 1.2377 -4.7076 20 6 5.0962 1.0257 -3.7913 21 1 4.8815 0.6829 -2.7899 22 6 6.4194 1.2601 -4.1820 23 7 7.3521 1.4093 -3.2769 24 14 6.8539 1.3600 -5.9961 25 1 6.8572 2.7812 -6.4267 26 1 8.2001 0.7731 -6.2156 27 1 5.8496 0.6052 -6.7879 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9996 -1.0727 0.4259 34 1 3.8531 0.4371 1.3574 35 1 6.1789 -0.1481 2.6723 36 1 6.4561 -1.6910 3.5152 37 1 6.3260 -1.6573 1.7400 38 1 2.0106 -1.3370 -3.8774 39 1 3.6885 -1.0397 -3.3632 40 1 0.9393 0.0968 -5.4585 41 1 1.1633 1.8157 -7.2041 42 1 3.2118 3.1687 -7.3659 43 1 5.0561 2.8137 -5.7834 44 1 8.2692 1.5714 -3.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774832712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -151.282264 kcal Electronic energy + Delta-G solvation = -27650.680536 eV Core-core repulsion = 23659.952117 eV Total energy + Delta-G solvation = -3990.728419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15513 -38.07522 -37.09573 -36.55506 -36.14350 -34.14109 -33.68934 -32.03908 -30.51833 -30.40899 -29.64922 -27.35036 -25.07570 -24.52694 -22.20048 -21.41880 -20.53947 -19.50122 -18.98695 -17.46355 -17.37197 -16.85673 -16.29113 -16.22399 -15.96870 -15.63619 -15.48902 -14.66399 -14.39840 -14.19995 -13.88980 -13.79520 -13.40726 -13.33647 -13.14355 -12.99974 -12.76495 -12.27702 -12.22124 -12.20259 -12.11957 -12.07442 -11.93847 -11.65723 -11.50797 -11.38158 -11.21054 -10.97584 -10.90233 -10.83304 -10.60361 -10.32861 -10.19373 -9.81878 -9.78511 -9.65918 -9.21488 -7.70348 -7.61836 -7.04022 -4.59029 -0.15663 2.39455 2.58191 2.62738 2.86573 3.05859 3.10265 3.24475 3.26196 3.44109 3.88892 3.91345 4.34692 4.42805 4.58584 4.63165 4.69050 4.85942 5.10648 5.18569 5.22872 5.32719 5.43650 5.48427 5.53202 5.65742 5.73087 5.76900 5.84907 6.00114 6.01132 6.08945 6.12189 6.21365 6.48208 6.63451 6.84829 6.91710 7.10755 7.34572 7.56502 7.65603 7.79805 8.03885 8.23634 8.39752 8.57086 8.71937 9.97960 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.003530 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.563203 B = 7930.943898 C = 9752.292468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.089 0.911 4 C -0.105 4.105 5 C -0.613 4.613 6 S 2.422 3.578 7 C -0.655 4.655 8 O -0.945 6.945 9 O -0.941 6.941 10 O -0.361 6.361 11 C 0.460 3.540 12 O -0.491 6.491 13 C -0.046 4.046 14 C -0.180 4.180 15 C -0.065 4.065 16 C -0.242 4.242 17 C -0.077 4.077 18 C -0.232 4.232 19 C 0.110 3.890 20 C -0.446 4.446 21 H 0.088 0.912 22 C 0.086 3.914 23 N -0.809 5.809 24 Si 0.910 3.090 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.243 1.243 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 -5.253 7.753 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 H 0.107 0.893 4 C -0.143 4.143 5 C -0.742 4.742 6 S 2.605 3.395 7 C -0.805 4.805 8 O -0.943 6.943 9 O -0.938 6.938 10 O -0.279 6.279 11 C 0.302 3.698 12 O -0.376 6.376 13 C -0.084 4.084 14 C -0.181 4.181 15 C -0.083 4.083 16 C -0.261 4.261 17 C -0.095 4.095 18 C -0.251 4.251 19 C 0.108 3.892 20 C -0.475 4.475 21 H 0.106 0.894 22 C -0.133 4.133 23 N -0.433 5.433 24 Si 0.737 3.263 25 H -0.197 1.197 26 H -0.218 1.218 27 H -0.166 1.166 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.792 -5.307 8.599 11.183 hybrid contribution 0.948 0.874 -1.305 1.834 sum -3.844 -4.433 7.294 9.361 Atomic orbital electron populations 1.22203 0.94258 1.03040 1.03248 1.22501 0.94210 0.97448 0.82481 0.89303 1.21448 0.90968 1.03659 0.98211 1.30341 1.06600 1.15388 1.21840 1.07724 0.78484 0.76026 0.77226 1.30245 1.25996 1.12256 1.11993 1.93585 1.78826 1.75754 1.46086 1.93595 1.83414 1.30089 1.86722 1.86581 1.77743 1.43052 1.20544 1.24317 0.74145 0.86428 0.84904 1.90641 1.46723 1.16579 1.83704 1.20009 1.03031 0.97638 0.87692 1.19053 0.97848 1.01706 0.99490 1.20463 0.96065 0.96790 0.94955 1.20354 0.98992 1.03255 1.03478 1.20632 0.94026 0.97613 0.97253 1.21013 0.99543 1.02837 1.01705 1.17485 0.92204 0.88882 0.90676 1.19395 0.89564 1.38944 0.99563 0.89448 1.26144 0.96290 0.90517 1.00357 1.69673 1.03166 1.33947 1.36469 0.86328 0.77592 0.79627 0.82789 1.19698 1.21837 1.16620 0.90837 0.91548 0.91474 0.88510 0.88990 0.83924 0.84671 0.85157 0.85437 0.84934 0.89059 0.87090 0.88869 0.88821 0.88851 0.88195 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.55 37.16 0.35 -1.60 16 2 C 0.09 1.21 2.56 -26.73 -0.07 1.14 16 3 H 0.09 1.32 7.16 -51.93 -0.37 0.95 16 4 C -0.10 -1.13 4.94 -26.73 -0.13 -1.26 16 5 C -0.61 -6.10 5.70 37.16 0.21 -5.89 16 6 S 2.42 23.03 5.36 -107.50 -0.58 22.45 16 7 C -0.66 -4.76 10.62 101.05 1.07 -3.68 16 8 O -0.95 -11.82 18.10 -57.83 -1.05 -12.87 16 9 O -0.94 -12.18 18.10 -57.83 -1.05 -13.23 16 10 O -0.36 -5.75 9.42 -39.24 -0.37 -6.12 16 11 C 0.46 8.73 7.56 36.00 0.27 9.00 16 12 O -0.49 -10.92 15.25 -18.75 -0.29 -11.20 16 13 C -0.05 -0.86 5.31 -29.04 -0.15 -1.01 16 14 C -0.18 -3.95 4.43 -103.91 -0.46 -4.41 16 15 C -0.06 -1.33 9.66 -39.66 -0.38 -1.71 16 16 C -0.24 -4.98 10.05 -39.29 -0.39 -5.37 16 17 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 18 C -0.23 -5.54 7.17 -38.87 -0.28 -5.82 16 19 C 0.11 2.70 5.10 -106.82 -0.54 2.16 16 20 C -0.45 -11.38 8.56 -37.74 -0.32 -11.70 16 21 H 0.09 2.31 7.00 -52.49 -0.37 1.94 16 22 C 0.09 2.14 5.41 -17.34 -0.09 2.05 16 23 N -0.81 -20.39 13.93 55.55 0.77 -19.61 16 24 Si 0.91 20.03 24.52 -169.99 -4.17 15.86 16 25 H -0.27 -5.88 6.71 56.52 0.38 -5.50 16 26 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.24 -5.46 6.86 56.52 0.39 -5.08 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.14 1.45 7.82 -51.92 -0.41 1.04 16 34 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.13 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.13 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.11 2.04 7.11 -51.93 -0.37 1.67 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.10 2.38 4.77 -52.49 -0.25 2.13 16 44 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -34.19 379.65 -8.74 -42.93 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.43 Total: 6.25 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -1.32 Total: -30.17 kcal Atomic # 7 Polarization: -20.39 SS G_CDS: 0.77 Total: -19.61 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -2.75 Total: -43.43 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.86 kcal Atomic # 16 Polarization: 23.03 SS G_CDS: -0.58 Total: 22.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.19 -8.74 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774832712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.352 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds