Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46498 * 2 1 4 4 C 1.52997 * 109.47350 * 120.00075 * 2 1 3 5 5 C 1.52998 * 109.47350 * 185.00187 * 4 2 1 6 6 S 1.81400 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81406 * 101.92058 * 180.02562 * 6 5 4 8 8 O 1.42108 * 108.57790 * 294.48576 * 6 5 4 9 9 O 1.42100 * 108.58096 * 65.51354 * 6 5 4 10 10 O 1.45204 * 109.47321 * 240.00750 * 2 1 3 11 11 C 1.34222 * 117.00501 * 89.99446 * 10 2 1 12 12 O 1.20828 * 119.99928 * 0.02562 * 11 10 2 13 13 C 1.50692 * 120.00308 * 179.97438 * 11 10 2 14 14 C 1.50701 * 109.47387 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.12763 * 265.00207 * 14 13 11 16 16 C 1.38615 * 120.24345 * 179.74505 * 15 14 13 17 17 C 1.38651 * 120.50409 * 0.25778 * 16 15 14 18 18 C 1.37593 * 120.25207 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.12583 * 85.27773 * 14 13 11 20 20 C 1.41393 * 120.24499 * 359.97438 * 19 14 13 21 21 H 1.08002 * 120.00158 * 330.03012 * 20 19 14 22 22 C 1.39946 * 120.00148 * 150.03881 * 20 19 14 23 23 N 1.30819 * 120.00428 * 162.08378 * 22 20 19 24 24 Si 1.86804 * 119.99667 * 342.07987 * 22 20 19 25 25 H 1.48500 * 109.46965 * 95.39321 * 24 22 20 26 26 H 1.48497 * 109.46929 * 215.39142 * 24 22 20 27 27 H 1.48498 * 109.47070 * 335.39263 * 24 22 20 28 28 H 1.08996 * 109.47394 * 299.99804 * 1 2 3 29 29 H 1.09006 * 109.46899 * 60.00058 * 1 2 3 30 30 H 1.09005 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47048 * 305.00473 * 4 2 1 32 32 H 1.09004 * 109.46817 * 64.99902 * 4 2 1 33 33 H 1.09000 * 109.47278 * 300.00145 * 5 4 2 34 34 H 1.09002 * 109.46730 * 60.00404 * 5 4 2 35 35 H 1.09001 * 109.46857 * 59.99946 * 7 6 5 36 36 H 1.08999 * 109.46645 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46963 * 299.99881 * 7 6 5 38 38 H 1.09001 * 109.46878 * 60.00305 * 13 11 10 39 39 H 1.09003 * 109.47548 * 300.00425 * 13 11 10 40 40 H 1.07997 * 119.87746 * 0.02562 * 15 14 13 41 41 H 1.08003 * 119.74582 * 180.22978 * 16 15 14 42 42 H 1.08000 * 119.87473 * 179.97438 * 17 16 15 43 43 H 1.07995 * 120.13235 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00567 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 16 4.1696 -1.4691 2.7944 7 6 5.9615 -1.2162 2.6678 8 8 3.6954 -0.7781 3.9420 9 8 3.8969 -2.8570 2.6582 10 8 2.0141 -0.6843 -1.1857 11 6 2.2172 0.0641 -2.2811 12 8 1.9982 1.2520 -2.2503 13 6 2.7194 -0.5767 -3.5492 14 6 2.8622 0.4735 -4.6205 15 6 1.8429 0.6850 -5.5209 16 6 1.9696 1.6540 -6.5040 17 6 3.1238 2.4168 -6.5957 18 6 4.1578 2.2187 -5.7099 19 6 4.0404 1.2377 -4.7076 20 6 5.0962 1.0257 -3.7913 21 1 4.8815 0.6829 -2.7899 22 6 6.4194 1.2601 -4.1820 23 7 7.3521 1.4093 -3.2769 24 14 6.8539 1.3600 -5.9961 25 1 6.8572 2.7812 -6.4267 26 1 8.2001 0.7731 -6.2156 27 1 5.8496 0.6052 -6.7879 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9996 -1.0727 0.4259 34 1 3.8531 0.4371 1.3574 35 1 6.1789 -0.1481 2.6723 36 1 6.4561 -1.6910 3.5152 37 1 6.3260 -1.6573 1.7400 38 1 2.0106 -1.3370 -3.8774 39 1 3.6885 -1.0397 -3.3632 40 1 0.9393 0.0968 -5.4585 41 1 1.1633 1.8157 -7.2041 42 1 3.2118 3.1687 -7.3659 43 1 5.0561 2.8137 -5.7834 44 1 8.2692 1.5714 -3.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774832712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -173.530749 kcal Electronic energy + Delta-G solvation = -27651.645303 eV Core-core repulsion = 23659.952117 eV Total energy + Delta-G solvation = -3991.693186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57958 -39.70272 -38.00445 -37.91982 -37.07017 -35.50212 -35.25017 -33.62657 -32.18552 -31.43109 -30.31198 -28.93623 -26.81302 -25.50006 -23.55886 -23.07750 -21.80960 -21.07644 -19.80922 -19.26650 -18.76989 -17.86192 -17.52228 -17.25411 -17.12731 -16.96224 -16.76344 -16.20338 -15.81233 -15.57368 -15.36158 -14.98576 -14.57466 -14.40596 -14.07068 -13.99094 -13.96117 -13.84302 -13.78393 -13.27327 -13.14977 -13.14261 -13.05079 -13.01350 -12.82405 -12.70184 -12.53943 -12.49566 -12.19219 -12.00877 -11.93759 -11.72695 -11.55206 -11.42319 -11.37729 -11.14580 -10.98491 -9.42268 -9.35200 -8.88253 -6.46841 -0.93832 0.72365 0.88554 1.28631 1.36814 1.40364 1.49892 1.83033 1.87434 2.13823 2.63860 2.65810 3.11169 3.47359 3.51479 3.69217 3.80974 3.94347 4.09031 4.13519 4.16528 4.22714 4.25610 4.31160 4.44272 4.50256 4.53304 4.64435 4.70969 4.83562 4.84264 4.91137 4.93413 4.96482 4.97741 5.14340 5.15094 5.35383 5.52516 5.66839 5.84701 5.92612 6.03082 6.26377 6.43214 6.76604 6.88858 6.94383 8.18807 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.003530 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.563203 B = 7930.943898 C = 9752.292468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.619 4.619 6 S 2.447 3.553 7 C -0.647 4.647 8 O -0.975 6.975 9 O -0.976 6.976 10 O -0.355 6.355 11 C 0.466 3.534 12 O -0.531 6.531 13 C -0.050 4.050 14 C -0.184 4.184 15 C -0.073 4.073 16 C -0.232 4.232 17 C -0.088 4.088 18 C -0.256 4.256 19 C 0.086 3.914 20 C -0.471 4.471 21 H 0.062 0.938 22 C 0.053 3.947 23 N -0.845 5.845 24 Si 0.958 3.042 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.251 1.251 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -5.828 6.914 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.748 4.748 6 S 2.633 3.367 7 C -0.799 4.799 8 O -0.973 6.973 9 O -0.974 6.974 10 O -0.273 6.273 11 C 0.310 3.690 12 O -0.419 6.419 13 C -0.087 4.087 14 C -0.185 4.185 15 C -0.091 4.091 16 C -0.250 4.250 17 C -0.106 4.106 18 C -0.275 4.275 19 C 0.084 3.916 20 C -0.500 4.500 21 H 0.080 0.920 22 C -0.162 4.162 23 N -0.471 5.471 24 Si 0.783 3.217 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.175 1.175 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.051 -5.906 7.769 11.482 hybrid contribution 1.166 1.058 -1.047 1.891 sum -4.885 -4.848 6.722 9.620 Atomic orbital electron populations 1.22213 0.92497 1.04127 1.03571 1.22824 0.95763 0.96673 0.82282 0.91254 1.21576 0.91541 1.04090 0.97566 1.30393 1.06412 1.16071 1.21947 1.06853 0.79267 0.74540 0.76018 1.30160 1.22751 1.13698 1.13313 1.93540 1.80296 1.76036 1.47384 1.93543 1.84718 1.32103 1.87011 1.86550 1.77386 1.42698 1.20664 1.24280 0.73221 0.85849 0.85638 1.90622 1.48712 1.18138 1.84477 1.20083 1.03972 0.97553 0.87048 1.19460 0.97231 1.01585 1.00271 1.20920 0.96836 0.97113 0.94261 1.20876 0.99176 1.01765 1.03218 1.21007 0.93702 0.98414 0.97437 1.21157 1.00382 1.03208 1.02779 1.17725 0.93064 0.89793 0.91066 1.19346 0.90634 1.41003 0.99042 0.91957 1.26688 0.96058 0.90294 1.03161 1.69695 1.03727 1.35974 1.37683 0.85586 0.77507 0.79477 0.79139 1.19472 1.20508 1.17497 0.88399 0.93356 0.89962 0.86295 0.88155 0.84404 0.83848 0.83674 0.83780 0.83996 0.85224 0.87491 0.85407 0.85359 0.86062 0.89004 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.55 71.98 0.69 -2.94 16 2 C 0.08 2.13 2.56 30.59 0.08 2.21 16 3 H 0.07 2.12 7.16 -2.38 -0.02 2.11 16 4 C -0.11 -2.28 4.94 30.59 0.15 -2.13 16 5 C -0.62 -12.24 5.70 71.98 0.41 -11.83 16 6 S 2.45 45.18 5.36 -56.49 -0.30 44.87 16 7 C -0.65 -8.41 10.62 113.37 1.20 -7.21 16 8 O -0.98 -23.85 18.10 -127.37 -2.31 -26.15 16 9 O -0.98 -25.00 18.10 -127.37 -2.31 -27.30 16 10 O -0.36 -11.25 9.42 -51.34 -0.48 -11.74 16 11 C 0.47 17.74 7.56 71.23 0.54 18.27 16 12 O -0.53 -24.04 15.25 21.96 0.33 -23.70 16 13 C -0.05 -1.80 5.31 29.10 0.15 -1.65 16 14 C -0.18 -7.93 4.43 -19.40 -0.09 -8.02 16 15 C -0.07 -2.81 9.66 22.22 0.21 -2.60 16 16 C -0.23 -8.75 10.05 22.46 0.23 -8.52 16 17 C -0.09 -3.60 10.02 22.22 0.22 -3.37 16 18 C -0.26 -12.17 7.17 22.73 0.16 -12.01 16 19 C 0.09 4.25 5.10 -21.29 -0.11 4.14 16 20 C -0.47 -24.89 8.56 23.46 0.20 -24.69 16 21 H 0.06 3.48 7.00 -2.91 -0.02 3.46 16 22 C 0.05 2.72 5.41 85.26 0.46 3.18 16 23 N -0.84 -43.95 13.93 21.83 0.30 -43.65 16 24 Si 0.96 41.73 24.52 68.60 1.68 43.41 16 25 H -0.27 -11.44 6.71 99.48 0.67 -10.78 16 26 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.25 -11.13 6.86 99.48 0.68 -10.45 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.14 2.86 7.82 -2.39 -0.02 2.84 16 34 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.13 3.62 8.05 -2.39 -0.02 3.60 16 39 H 0.11 3.99 7.11 -2.39 -0.02 3.98 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.09 4.41 4.77 -2.91 -0.01 4.40 16 44 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -74.95 379.65 2.38 -72.57 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.94 Total: 28.83 kcal Atomic # 6 Polarization: -61.67 SS G_CDS: 4.52 Total: -57.15 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -84.14 SS G_CDS: -4.76 Total: -88.90 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.68 Total: 43.41 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.30 Total: 44.87 kcal Total: -74.95 2.38 -72.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774832712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.957 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds