Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57569 * 2 1 4 4 O 1.42095 * 108.58234 * 228.97813 * 2 1 3 5 5 C 1.81397 * 101.92123 * 114.48746 * 2 1 3 6 6 C 1.53005 * 109.46984 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.46946 * 179.97438 * 6 5 2 8 8 O 1.45197 * 109.46882 * 180.02562 * 7 6 5 9 9 C 1.34226 * 117.00347 * 179.97438 * 8 7 6 10 10 O 1.20831 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00935 * 180.02562 * 9 8 7 12 12 C 1.52989 * 109.47663 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47467 * 54.05584 * 12 11 9 14 14 C 1.50705 * 109.47254 * 294.05457 * 12 11 9 15 15 H 1.08002 * 119.99831 * 330.08371 * 14 12 11 16 16 C 1.37873 * 120.00048 * 150.07587 * 14 12 11 17 17 N 1.31520 * 120.00231 * 6.57206 * 16 14 12 18 18 Si 1.86800 * 120.00305 * 186.57200 * 16 14 12 19 19 H 1.48494 * 109.47126 * 270.00427 * 18 16 14 20 20 H 1.48510 * 109.46705 * 29.99887 * 18 16 14 21 21 H 1.48491 * 109.47295 * 149.99656 * 18 16 14 22 22 C 1.50704 * 109.47294 * 174.05759 * 12 11 9 23 23 C 1.38229 * 119.99815 * 64.29500 * 22 12 11 24 24 C 1.38236 * 120.00027 * 179.81055 * 23 22 12 25 25 C 1.38238 * 119.99727 * 0.39709 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86220 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.09005 * 109.47587 * 305.50894 * 1 2 3 29 29 H 1.08996 * 109.47564 * 65.51186 * 1 2 3 30 30 H 1.09002 * 109.47291 * 185.51260 * 1 2 3 31 31 H 1.08999 * 109.47138 * 60.00278 * 5 2 1 32 32 H 1.09000 * 109.47372 * 300.00216 * 5 2 1 33 33 H 1.08999 * 109.47044 * 60.00113 * 6 5 2 34 34 H 1.09000 * 109.47155 * 300.00241 * 6 5 2 35 35 H 1.08999 * 109.47124 * 60.00202 * 7 6 5 36 36 H 1.09002 * 109.47136 * 299.99657 * 7 6 5 37 37 H 1.09009 * 109.46892 * 59.99872 * 11 9 8 38 38 H 1.09001 * 109.46844 * 300.00438 * 11 9 8 39 39 H 0.97003 * 119.99363 * 354.72502 * 17 16 14 40 40 H 1.08006 * 120.00398 * 0.02562 * 23 22 12 41 41 H 1.08004 * 120.00446 * 180.23518 * 24 23 22 42 42 H 1.08006 * 119.99774 * 179.82936 * 25 24 23 43 43 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 6 4.0215 -1.4383 3.1610 8 8 5.4609 -1.5162 3.3351 9 6 5.9079 -2.0397 4.4874 10 8 5.1224 -2.4207 5.3228 11 6 7.3894 -2.1524 4.7394 12 6 7.6267 -2.7784 6.1150 13 1 7.0882 -3.7237 6.1818 14 6 7.1309 -1.8411 7.1858 15 1 7.1461 -0.7741 7.0189 16 6 6.6577 -2.3455 8.3785 17 7 6.7577 -3.6317 8.6344 18 14 5.8744 -1.2023 9.6311 19 1 6.9193 -0.6850 10.5505 20 1 5.2275 -0.0658 8.9273 21 1 4.8535 -1.9473 10.4108 22 6 9.1009 -3.0254 6.3070 23 6 9.9801 -1.9597 6.3521 24 6 11.3319 -2.1861 6.5322 25 6 11.8054 -3.4786 6.6589 26 6 10.9268 -4.5446 6.6084 27 6 9.5746 -4.3180 6.4323 28 1 -0.3634 0.5969 0.8366 29 1 -0.3634 0.4259 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7370 1.6664 32 1 1.7609 -0.1171 2.4042 33 1 4.1327 0.1831 1.7473 34 1 4.1335 -1.4367 1.0094 35 1 3.5942 -2.4397 3.2125 36 1 3.5935 -0.8196 3.9498 37 1 7.8397 -1.1601 4.7088 38 1 7.8418 -2.7804 3.9718 39 1 7.0938 -4.2367 7.9547 40 1 9.6106 -0.9500 6.2502 41 1 12.0184 -1.3532 6.5713 42 1 12.8619 -3.6556 6.7968 43 1 11.2968 -5.5544 6.7070 44 1 8.8881 -5.1509 6.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795980158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -144.204096 kcal Electronic energy + Delta-G solvation = -26593.250136 eV Core-core repulsion = 22602.828650 eV Total energy + Delta-G solvation = -3990.421487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90741 -38.53045 -37.33940 -36.50496 -36.32943 -34.41035 -34.17129 -31.46321 -30.15384 -30.12047 -29.25698 -27.32994 -25.18231 -23.14562 -22.12350 -21.72732 -20.75472 -19.63366 -19.21272 -17.33188 -17.07511 -16.88232 -16.71380 -16.30035 -16.13862 -15.86005 -15.50189 -14.88642 -14.36868 -14.18216 -13.82436 -13.73274 -13.66822 -13.37253 -13.12286 -13.03407 -12.75048 -12.48775 -12.43181 -12.40376 -12.34066 -12.04614 -11.71268 -11.63760 -11.45446 -11.39150 -11.06200 -10.88566 -10.77287 -10.48297 -10.23404 -10.23013 -10.11671 -9.77195 -9.65365 -8.74448 -8.37590 -8.17634 -7.70556 -6.33377 -4.02607 -0.45087 2.15247 2.19267 2.32658 2.95538 3.00317 3.35778 3.43911 3.49178 3.59255 3.62922 4.23416 4.28037 4.33049 4.53490 4.55390 4.61044 4.70669 4.97854 5.13852 5.18990 5.33108 5.38277 5.54840 5.56887 5.59110 5.65469 5.71985 5.81922 5.92475 5.96823 6.10688 6.26833 6.34788 6.53662 6.73055 6.84650 6.99526 7.09403 7.18722 7.32308 7.63139 7.80432 8.10306 8.40532 8.52818 8.87265 9.67456 11.06832 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002385 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.500723 B =11737.772027 C =13042.003516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.427 3.573 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.612 4.612 6 C -0.111 4.111 7 C 0.074 3.926 8 O -0.373 6.373 9 C 0.459 3.541 10 O -0.470 6.470 11 C -0.090 4.090 12 C 0.068 3.932 13 H 0.053 0.947 14 C -0.577 4.577 15 H 0.048 0.952 16 C 0.033 3.967 17 N -0.903 5.903 18 Si 1.067 2.933 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.128 4.128 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 4.459 -14.814 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.608 3.392 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.740 4.740 6 C -0.150 4.150 7 C -0.002 4.002 8 O -0.292 6.292 9 C 0.300 3.700 10 O -0.353 6.353 11 C -0.128 4.128 12 C 0.049 3.951 13 H 0.071 0.929 14 C -0.614 4.614 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.538 5.538 18 Si 0.896 3.104 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.133 4.684 -13.683 16.593 hybrid contribution -0.170 -0.349 -0.611 0.724 sum -8.303 4.335 -14.294 17.089 Atomic orbital electron populations 1.30279 1.26812 1.11662 1.11868 1.07701 0.78228 0.75789 0.77456 1.93616 1.78966 1.34432 1.86392 1.93611 1.78981 1.67050 1.53832 1.30312 1.05415 1.14541 1.23742 1.21198 0.90627 1.04188 0.98946 1.22739 0.79674 1.01450 0.96307 1.86499 1.24819 1.76561 1.41308 1.23963 0.93382 0.74349 0.78315 1.90707 1.57480 1.43349 1.43799 1.21511 0.86949 1.03551 1.00765 1.17947 0.88058 0.98486 0.90572 0.92913 1.21602 1.44913 0.92791 1.02108 0.93348 1.25624 0.94529 0.98553 0.98583 1.70739 1.43726 1.03466 1.35884 0.83582 0.76657 0.74745 0.75446 1.21641 1.21623 1.21050 1.20691 0.97346 0.91943 0.93365 1.20929 0.92317 0.99120 1.00118 1.21023 0.95763 0.96304 1.01587 1.20847 0.98620 0.93137 1.04273 1.20965 0.93817 0.98095 1.01352 1.21051 0.94856 0.96889 1.01860 0.85243 0.85208 0.85272 0.84544 0.84485 0.88972 0.89045 0.91248 0.91033 0.88972 0.90300 0.91773 0.86604 0.87328 0.87498 0.87378 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.92 10.62 101.05 1.07 -0.85 16 2 S 2.43 15.83 5.36 -107.50 -0.58 15.25 16 3 O -0.94 -9.94 18.10 -57.83 -1.05 -10.99 16 4 O -0.94 -9.82 18.10 -57.83 -1.05 -10.86 16 5 C -0.61 -3.61 5.81 37.16 0.22 -3.39 16 6 C -0.11 -1.10 5.60 -26.73 -0.15 -1.25 16 7 C 0.07 0.99 5.47 37.16 0.20 1.19 16 8 O -0.37 -6.27 10.22 -39.25 -0.40 -6.67 16 9 C 0.46 9.25 7.71 36.01 0.28 9.53 16 10 O -0.47 -11.19 14.77 -18.75 -0.28 -11.47 16 11 C -0.09 -1.75 5.05 -27.89 -0.14 -1.89 16 12 C 0.07 1.59 1.31 -92.92 -0.12 1.47 16 13 H 0.05 1.37 6.24 -51.93 -0.32 1.04 16 14 C -0.58 -15.28 6.40 -34.44 -0.22 -15.50 16 15 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 17 N -0.90 -26.85 13.63 55.43 0.76 -26.09 16 18 Si 1.07 25.61 29.91 -169.99 -5.08 20.53 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.03 -0.71 4.77 -104.63 -0.50 -1.21 16 23 C -0.11 -2.14 8.88 -39.59 -0.35 -2.49 16 24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 25 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.12 -2.23 10.05 -39.59 -0.40 -2.63 16 27 C -0.13 -2.62 9.67 -39.59 -0.38 -3.00 16 28 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.14 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.14 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 37 H 0.09 1.68 7.87 -51.92 -0.41 1.28 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.27 7.94 6.68 -40.82 -0.27 7.67 16 40 H 0.12 2.25 7.80 -52.48 -0.41 1.84 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 2.21 7.95 -52.49 -0.42 1.80 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -38.17 388.21 -9.75 -47.91 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.53 Total: 1.37 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -1.39 Total: -24.82 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.76 Total: -26.09 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.77 Total: -40.00 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Atomic # 16 Polarization: 15.83 SS G_CDS: -0.58 Total: 15.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.17 -9.75 -47.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795980158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.292 kcal (2) G-P(sol) polarization free energy of solvation -38.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds