Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57569 * 2 1 4 4 O 1.42095 * 108.58234 * 228.97813 * 2 1 3 5 5 C 1.81397 * 101.92123 * 114.48746 * 2 1 3 6 6 C 1.53005 * 109.46984 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.46946 * 179.97438 * 6 5 2 8 8 O 1.45197 * 109.46882 * 180.02562 * 7 6 5 9 9 C 1.34226 * 117.00347 * 179.97438 * 8 7 6 10 10 O 1.20831 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00935 * 180.02562 * 9 8 7 12 12 C 1.52989 * 109.47663 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47467 * 54.05584 * 12 11 9 14 14 C 1.50705 * 109.47254 * 294.05457 * 12 11 9 15 15 H 1.08002 * 119.99831 * 330.08371 * 14 12 11 16 16 C 1.37873 * 120.00048 * 150.07587 * 14 12 11 17 17 N 1.31520 * 120.00231 * 6.57206 * 16 14 12 18 18 Si 1.86800 * 120.00305 * 186.57200 * 16 14 12 19 19 H 1.48494 * 109.47126 * 270.00427 * 18 16 14 20 20 H 1.48510 * 109.46705 * 29.99887 * 18 16 14 21 21 H 1.48491 * 109.47295 * 149.99656 * 18 16 14 22 22 C 1.50704 * 109.47294 * 174.05759 * 12 11 9 23 23 C 1.38229 * 119.99815 * 64.29500 * 22 12 11 24 24 C 1.38236 * 120.00027 * 179.81055 * 23 22 12 25 25 C 1.38238 * 119.99727 * 0.39709 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86220 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.09005 * 109.47587 * 305.50894 * 1 2 3 29 29 H 1.08996 * 109.47564 * 65.51186 * 1 2 3 30 30 H 1.09002 * 109.47291 * 185.51260 * 1 2 3 31 31 H 1.08999 * 109.47138 * 60.00278 * 5 2 1 32 32 H 1.09000 * 109.47372 * 300.00216 * 5 2 1 33 33 H 1.08999 * 109.47044 * 60.00113 * 6 5 2 34 34 H 1.09000 * 109.47155 * 300.00241 * 6 5 2 35 35 H 1.08999 * 109.47124 * 60.00202 * 7 6 5 36 36 H 1.09002 * 109.47136 * 299.99657 * 7 6 5 37 37 H 1.09009 * 109.46892 * 59.99872 * 11 9 8 38 38 H 1.09001 * 109.46844 * 300.00438 * 11 9 8 39 39 H 0.97003 * 119.99363 * 354.72502 * 17 16 14 40 40 H 1.08006 * 120.00398 * 0.02562 * 23 22 12 41 41 H 1.08004 * 120.00446 * 180.23518 * 24 23 22 42 42 H 1.08006 * 119.99774 * 179.82936 * 25 24 23 43 43 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 6 4.0215 -1.4383 3.1610 8 8 5.4609 -1.5162 3.3351 9 6 5.9079 -2.0397 4.4874 10 8 5.1224 -2.4207 5.3228 11 6 7.3894 -2.1524 4.7394 12 6 7.6267 -2.7784 6.1150 13 1 7.0882 -3.7237 6.1818 14 6 7.1309 -1.8411 7.1858 15 1 7.1461 -0.7741 7.0189 16 6 6.6577 -2.3455 8.3785 17 7 6.7577 -3.6317 8.6344 18 14 5.8744 -1.2023 9.6311 19 1 6.9193 -0.6850 10.5505 20 1 5.2275 -0.0658 8.9273 21 1 4.8535 -1.9473 10.4108 22 6 9.1009 -3.0254 6.3070 23 6 9.9801 -1.9597 6.3521 24 6 11.3319 -2.1861 6.5322 25 6 11.8054 -3.4786 6.6589 26 6 10.9268 -4.5446 6.6084 27 6 9.5746 -4.3180 6.4323 28 1 -0.3634 0.5969 0.8366 29 1 -0.3634 0.4259 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7370 1.6664 32 1 1.7609 -0.1171 2.4042 33 1 4.1327 0.1831 1.7473 34 1 4.1335 -1.4367 1.0094 35 1 3.5942 -2.4397 3.2125 36 1 3.5935 -0.8196 3.9498 37 1 7.8397 -1.1601 4.7088 38 1 7.8418 -2.7804 3.9718 39 1 7.0938 -4.2367 7.9547 40 1 9.6106 -0.9500 6.2502 41 1 12.0184 -1.3532 6.5713 42 1 12.8619 -3.6556 6.7968 43 1 11.2968 -5.5544 6.7070 44 1 8.8881 -5.1509 6.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795980158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -169.623924 kcal Electronic energy + Delta-G solvation = -26594.352423 eV Core-core repulsion = 22602.828650 eV Total energy + Delta-G solvation = -3991.523773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46234 -40.03635 -37.99671 -37.87739 -37.04748 -36.14077 -35.13569 -33.37337 -31.61912 -30.77187 -30.39132 -28.37424 -26.94755 -24.87392 -23.27207 -22.98037 -22.23167 -21.30328 -19.79140 -18.88450 -18.64041 -17.90385 -17.72270 -17.33984 -17.06013 -16.90057 -16.77995 -16.14911 -15.73344 -15.65437 -15.63340 -14.82521 -14.46797 -14.26514 -14.07650 -14.03979 -13.93006 -13.87786 -13.66668 -13.51717 -13.21458 -13.11732 -13.03021 -12.83572 -12.78959 -12.63484 -12.38974 -12.09661 -11.98734 -11.96933 -11.77267 -11.57668 -11.52944 -11.50703 -11.24514 -10.69484 -10.41100 -9.64764 -9.30647 -8.49370 -6.17079 -0.94395 0.67119 0.71341 1.37637 1.48639 1.58704 1.72143 1.73194 1.88187 2.58599 2.76021 3.08835 3.13231 3.34044 3.58406 3.69932 3.76088 4.07426 4.10389 4.12473 4.13885 4.24678 4.27720 4.31916 4.34877 4.36982 4.44689 4.56972 4.59140 4.75447 4.76856 4.83219 4.90761 5.00944 5.03315 5.18462 5.35894 5.38624 5.49311 5.74126 5.80281 5.90039 6.18730 6.27251 6.36337 6.72757 6.96151 7.59190 8.90909 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002385 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.500723 B =11737.772027 C =13042.003516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.432 3.568 3 O -0.986 6.986 4 O -0.986 6.986 5 C -0.607 4.607 6 C -0.115 4.115 7 C 0.064 3.936 8 O -0.368 6.368 9 C 0.463 3.537 10 O -0.515 6.515 11 C -0.088 4.088 12 C 0.071 3.929 13 H 0.015 0.985 14 C -0.569 4.569 15 H 0.042 0.958 16 C -0.021 4.021 17 N -0.938 5.938 18 Si 1.102 2.898 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.289 1.289 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.150 4.150 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.259 0.741 40 H 0.115 0.885 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.136 0.864 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 5.371 -15.297 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.619 3.381 3 O -0.984 6.984 4 O -0.983 6.983 5 C -0.736 4.736 6 C -0.153 4.153 7 C -0.011 4.011 8 O -0.286 6.286 9 C 0.306 3.694 10 O -0.402 6.402 11 C -0.126 4.126 12 C 0.052 3.948 13 H 0.033 0.967 14 C -0.607 4.607 15 H 0.061 0.939 16 C -0.220 4.220 17 N -0.576 5.576 18 Si 0.927 3.073 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.215 1.215 22 C -0.058 4.058 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.168 4.168 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.840 5.626 -14.217 17.182 hybrid contribution -0.258 -0.644 -0.569 0.897 sum -8.098 4.982 -14.786 17.579 Atomic orbital electron populations 1.30068 1.21042 1.14057 1.13533 1.07208 0.80129 0.74004 0.76758 1.93553 1.81259 1.36590 1.86965 1.93550 1.81244 1.67690 1.55794 1.30291 1.02622 1.16749 1.23924 1.21245 0.93766 1.03676 0.96649 1.23127 0.77440 1.02165 0.98353 1.86474 1.27309 1.75482 1.39379 1.24044 0.93417 0.73442 0.78474 1.90689 1.58544 1.45467 1.45478 1.21442 0.87178 1.04459 0.99503 1.17770 0.89118 0.96196 0.91694 0.96666 1.21857 1.43531 0.92885 1.02420 0.93943 1.26771 0.95189 0.99050 1.00995 1.70830 1.46462 1.04264 1.35995 0.83118 0.76324 0.73709 0.74167 1.20082 1.20283 1.21531 1.20516 0.96405 0.93221 0.95668 1.21028 0.93507 0.98487 1.01061 1.21413 0.95068 0.97946 0.99852 1.21327 1.00427 0.92346 1.01980 1.21306 0.92693 1.00138 1.00157 1.21130 0.96299 0.96230 1.03188 0.82815 0.84320 0.82750 0.81868 0.82033 0.89241 0.89021 0.90804 0.91165 0.87541 0.87787 0.92981 0.86717 0.83965 0.83558 0.84621 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.50 10.62 113.37 1.20 -0.30 16 2 S 2.43 29.24 5.36 -56.49 -0.30 28.93 16 3 O -0.99 -20.95 18.10 -127.37 -2.31 -23.26 16 4 O -0.99 -20.60 18.10 -127.37 -2.30 -22.91 16 5 C -0.61 -6.02 5.81 71.98 0.42 -5.60 16 6 C -0.12 -2.21 5.60 30.60 0.17 -2.04 16 7 C 0.06 1.70 5.47 71.98 0.39 2.09 16 8 O -0.37 -12.49 10.22 -51.38 -0.53 -13.01 16 9 C 0.46 19.13 7.71 71.24 0.55 19.68 16 10 O -0.52 -25.46 14.77 21.95 0.32 -25.14 16 11 C -0.09 -3.50 5.05 29.84 0.15 -3.35 16 12 C 0.07 3.44 1.31 -12.29 -0.02 3.42 16 13 H 0.02 0.84 6.24 -2.39 -0.01 0.82 16 14 C -0.57 -30.98 6.40 25.60 0.16 -30.82 16 15 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 16 C -0.02 -1.21 5.45 84.65 0.46 -0.75 16 17 N -0.94 -58.02 13.63 21.45 0.29 -57.72 16 18 Si 1.10 52.38 29.91 68.60 2.05 54.43 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 C -0.06 -2.53 4.77 -19.87 -0.09 -2.63 16 23 C -0.12 -4.81 8.88 22.27 0.20 -4.61 16 24 C -0.12 -4.05 10.05 22.27 0.22 -3.83 16 25 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 26 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 27 C -0.15 -6.22 9.67 22.27 0.22 -6.01 16 28 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.11 3.89 7.87 -2.38 -0.02 3.87 16 38 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.26 16.13 6.68 -92.71 -0.62 15.51 16 40 H 0.11 4.40 7.80 -2.91 -0.02 4.37 16 41 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 42 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 43 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.10 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -87.27 388.21 2.85 -84.42 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.13 Total: 17.15 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 4.49 Total: -42.89 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.29 Total: -57.72 kcal Atomic # 8 Polarization: -79.50 SS G_CDS: -4.81 Total: -84.31 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.43 kcal Atomic # 16 Polarization: 29.24 SS G_CDS: -0.30 Total: 28.93 kcal Total: -87.27 2.85 -84.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795980158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.205 kcal (2) G-P(sol) polarization free energy of solvation -87.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds