Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36001 * 116.99718 * 2 1 4 4 C 1.38563 * 120.07142 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99661 * 179.70596 * 4 3 2 6 6 C 1.38261 * 120.14550 * 0.55107 * 5 4 3 7 7 C 1.50693 * 119.92483 * 179.72335 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.72502 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.52994 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47236 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.47340 * 180.02562 * 13 12 11 15 15 C 1.76196 * 100.00033 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00036 * 179.97438 * 15 14 13 18 18 N 1.31635 * 120.00166 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99932 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46996 * 89.99758 * 19 17 15 21 21 H 1.48498 * 109.47188 * 209.99749 * 19 17 15 22 22 H 1.48499 * 109.47268 * 329.99655 * 19 17 15 23 23 C 1.38240 * 120.14447 * 359.45135 * 6 5 4 24 24 C 1.38563 * 120.00042 * 0.26966 * 23 6 5 25 25 O 1.35995 * 120.07195 * 179.97438 * 24 23 6 26 26 C 1.42901 * 117.00348 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46752 * 60.00679 * 1 2 3 28 28 H 1.09007 * 109.46526 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47289 * 299.99840 * 1 2 3 30 30 H 1.07994 * 120.00195 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92971 * 180.29338 * 5 4 3 32 32 H 1.09004 * 109.47069 * 149.72705 * 7 6 5 33 33 H 1.09000 * 109.47237 * 29.73211 * 7 6 5 34 34 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 35 35 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 36 36 H 1.08997 * 109.47687 * 300.00275 * 12 11 10 37 37 H 1.09002 * 109.47633 * 60.00402 * 12 11 10 38 38 H 1.09006 * 109.46823 * 299.99852 * 13 12 11 39 39 H 1.08996 * 109.47249 * 60.00061 * 13 12 11 40 40 H 0.96993 * 120.00015 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99788 * 180.25288 * 23 6 5 42 42 H 1.09004 * 109.46518 * 59.99975 * 26 25 24 43 43 H 1.08994 * 109.47204 * 179.97438 * 26 25 24 44 44 H 1.08994 * 109.47190 * 300.00586 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3028 3.6799 0.0008 7 6 3.9835 5.0244 0.0012 8 6 4.2102 5.4732 -1.4194 9 8 3.8551 4.7732 -2.3380 10 8 4.8012 6.6533 -1.6643 11 6 4.9818 7.0237 -3.0566 12 6 5.6671 8.3892 -3.1362 13 6 5.8569 8.7799 -4.6032 14 16 6.6684 10.3951 -4.6974 15 6 6.7594 10.5902 -6.4462 16 1 6.3696 9.8210 -7.0964 17 6 7.3311 11.7330 -6.9881 18 7 7.3986 11.8791 -8.2946 19 14 8.0045 13.0638 -5.8635 20 1 9.4341 12.7880 -5.5710 21 1 7.8817 14.3847 -6.5308 22 1 7.2332 13.0768 -4.5946 23 6 4.0602 2.5235 0.0002 24 6 3.4359 1.2865 -0.0002 25 8 4.1795 0.1478 -0.0013 26 6 5.6003 0.3008 -0.0015 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2146 2.3196 0.0014 31 1 1.3341 4.5115 0.0119 32 1 4.9417 4.9464 0.5149 33 1 3.3536 5.7503 0.5155 34 1 5.6010 6.2772 -3.5539 35 1 4.0100 7.0754 -3.5477 36 1 5.0482 9.1360 -2.6388 37 1 6.6389 8.3373 -2.6451 38 1 6.4757 8.0332 -5.1009 39 1 4.8850 8.8320 -5.0940 40 1 7.7984 12.6775 -8.6733 41 1 5.1385 2.5842 -0.0003 42 1 5.9067 0.8499 0.8890 43 1 6.0716 -0.6820 -0.0019 44 1 5.9064 0.8514 -0.8910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805339813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -147.783389 kcal Electronic energy + Delta-G solvation = -25579.867742 eV Core-core repulsion = 21589.291046 eV Total energy + Delta-G solvation = -3990.576696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08480 -40.39777 -38.78872 -37.70819 -36.56445 -33.67267 -32.60444 -32.47090 -30.71787 -29.03339 -27.60450 -27.23567 -26.18413 -25.55865 -22.64081 -22.44743 -21.46294 -20.84791 -18.79734 -17.88615 -17.49790 -17.35774 -17.23375 -16.61760 -16.50501 -16.30819 -15.58966 -15.13453 -15.03205 -14.97702 -14.81069 -14.67080 -14.30918 -13.80532 -13.26403 -13.05739 -12.92809 -12.80634 -12.62607 -12.59916 -12.38843 -12.15430 -11.59912 -11.56495 -11.54496 -11.50578 -11.30359 -11.23018 -11.11357 -10.99815 -10.68294 -10.37912 -10.25435 -9.84231 -9.08178 -9.04124 -8.63488 -8.13787 -7.00091 -6.31495 -4.05065 0.86727 1.02791 2.08891 2.49680 2.89447 2.92357 2.99584 3.27562 3.38097 3.42423 3.55791 4.15867 4.28187 4.34397 4.57096 4.62455 4.65724 4.74105 4.78083 4.80956 4.84076 4.84680 4.95812 5.01663 5.07315 5.07672 5.10482 5.12498 5.13637 5.17632 5.31207 5.36735 5.65640 5.66774 5.76347 5.85612 6.02995 6.13966 6.25786 6.31020 6.38240 6.55378 6.67589 7.20940 7.65763 7.92064 8.41381 9.13779 10.77890 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.001588 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.511675 B =17630.091802 C =17824.381919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.102 3.898 4 C -0.171 4.171 5 C -0.097 4.097 6 C -0.074 4.074 7 C -0.070 4.070 8 C 0.458 3.542 9 O -0.500 6.500 10 O -0.357 6.357 11 C 0.073 3.927 12 C -0.101 4.101 13 C -0.085 4.085 14 S -0.206 6.206 15 C -0.506 4.506 16 H 0.089 0.911 17 C 0.092 3.908 18 N -0.880 5.880 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.238 1.238 23 C -0.154 4.154 24 C 0.101 3.899 25 O -0.307 6.307 26 C 0.025 3.975 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.271 0.729 41 H 0.136 0.864 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -22.405 22.937 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.056 3.944 4 C -0.190 4.190 5 C -0.116 4.116 6 C -0.074 4.074 7 C -0.108 4.108 8 C 0.300 3.700 9 O -0.387 6.387 10 O -0.274 6.274 11 C -0.002 4.002 12 C -0.139 4.139 13 C -0.233 4.233 14 S 0.022 5.978 15 C -0.653 4.653 16 H 0.107 0.893 17 C -0.116 4.116 18 N -0.517 5.517 19 Si 0.687 3.313 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.162 1.162 23 C -0.173 4.173 24 C 0.055 3.945 25 O -0.221 6.221 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.728 -22.173 23.272 33.886 hybrid contribution -0.066 0.181 -1.078 1.096 sum -10.794 -21.991 22.193 33.055 Atomic orbital electron populations 1.23082 0.78499 1.04042 1.01314 1.86173 1.21078 1.25893 1.88943 1.18271 0.89152 0.85274 1.01656 1.21014 1.00017 0.91309 1.06620 1.20715 0.93512 0.97374 0.99967 1.18936 0.93388 0.92873 1.02223 1.20249 1.03881 0.95175 0.91467 1.23531 0.74661 0.79344 0.92457 1.90709 1.46866 1.54400 1.46696 1.86466 1.71979 1.36885 1.32050 1.23219 1.01497 0.97501 0.78003 1.21326 1.01772 0.94005 0.96821 1.22951 1.03279 1.00372 0.96696 1.84154 1.78713 1.21272 1.13690 1.22125 1.46267 1.09522 0.87387 0.89305 1.24794 0.94366 0.97519 0.94940 1.69937 1.43124 1.28436 1.10165 0.86669 0.80883 0.81370 0.82412 1.19324 1.20027 1.16154 1.20888 1.00270 0.90564 1.05567 1.18143 0.88262 0.86005 1.02085 1.86167 1.18759 1.28107 1.89041 1.23096 0.78516 1.03998 1.01403 0.92589 0.88174 0.92663 0.84547 0.85366 0.86730 0.86475 0.91061 0.91018 0.90251 0.90274 0.91033 0.90977 0.91915 0.84672 0.92644 0.88091 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.18 10.28 -34.24 -0.35 -3.54 16 3 C 0.10 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.17 -1.50 9.04 -39.46 -0.36 -1.86 16 5 C -0.10 -0.85 9.69 -39.57 -0.38 -1.24 16 6 C -0.07 -0.68 4.37 -104.62 -0.46 -1.14 16 7 C -0.07 -0.54 5.94 -29.04 -0.17 -0.71 16 8 C 0.46 5.40 7.95 36.00 0.29 5.69 16 9 O -0.50 -7.55 15.78 -18.76 -0.30 -7.85 16 10 O -0.36 -4.49 10.22 -39.26 -0.40 -4.89 16 11 C 0.07 0.99 5.47 37.15 0.20 1.19 16 12 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 13 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 14 S -0.21 -4.94 19.41 -107.50 -2.09 -7.02 16 15 C -0.51 -14.56 10.04 30.94 0.31 -14.25 16 16 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 17 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 18 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 19 Si 0.86 21.29 27.74 -169.99 -4.71 16.57 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 23 C -0.15 -1.47 8.69 -39.46 -0.34 -1.82 16 24 C 0.10 1.10 6.70 -39.12 -0.26 0.84 16 25 O -0.31 -3.32 10.28 -34.23 -0.35 -3.67 16 26 C 0.03 0.17 9.81 101.05 0.99 1.16 16 27 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.35 8.14 -51.91 -0.42 0.93 16 39 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 42 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -35.40 388.55 -7.53 -42.94 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.47 Total: -1.98 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 0.51 Total: -10.63 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.78 Total: -25.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.40 Total: -19.95 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.40 -7.53 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805339813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.844 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds