Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36001 * 116.99718 * 2 1 4 4 C 1.38563 * 120.07142 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99661 * 179.70596 * 4 3 2 6 6 C 1.38261 * 120.14550 * 0.55107 * 5 4 3 7 7 C 1.50693 * 119.92483 * 179.72335 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.72502 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.52994 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47236 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.47340 * 180.02562 * 13 12 11 15 15 C 1.76196 * 100.00033 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00036 * 179.97438 * 15 14 13 18 18 N 1.31635 * 120.00166 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99932 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46996 * 89.99758 * 19 17 15 21 21 H 1.48498 * 109.47188 * 209.99749 * 19 17 15 22 22 H 1.48499 * 109.47268 * 329.99655 * 19 17 15 23 23 C 1.38240 * 120.14447 * 359.45135 * 6 5 4 24 24 C 1.38563 * 120.00042 * 0.26966 * 23 6 5 25 25 O 1.35995 * 120.07195 * 179.97438 * 24 23 6 26 26 C 1.42901 * 117.00348 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46752 * 60.00679 * 1 2 3 28 28 H 1.09007 * 109.46526 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47289 * 299.99840 * 1 2 3 30 30 H 1.07994 * 120.00195 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92971 * 180.29338 * 5 4 3 32 32 H 1.09004 * 109.47069 * 149.72705 * 7 6 5 33 33 H 1.09000 * 109.47237 * 29.73211 * 7 6 5 34 34 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 35 35 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 36 36 H 1.08997 * 109.47687 * 300.00275 * 12 11 10 37 37 H 1.09002 * 109.47633 * 60.00402 * 12 11 10 38 38 H 1.09006 * 109.46823 * 299.99852 * 13 12 11 39 39 H 1.08996 * 109.47249 * 60.00061 * 13 12 11 40 40 H 0.96993 * 120.00015 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99788 * 180.25288 * 23 6 5 42 42 H 1.09004 * 109.46518 * 59.99975 * 26 25 24 43 43 H 1.08994 * 109.47204 * 179.97438 * 26 25 24 44 44 H 1.08994 * 109.47190 * 300.00586 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3028 3.6799 0.0008 7 6 3.9835 5.0244 0.0012 8 6 4.2102 5.4732 -1.4194 9 8 3.8551 4.7732 -2.3380 10 8 4.8012 6.6533 -1.6643 11 6 4.9818 7.0237 -3.0566 12 6 5.6671 8.3892 -3.1362 13 6 5.8569 8.7799 -4.6032 14 16 6.6684 10.3951 -4.6974 15 6 6.7594 10.5902 -6.4462 16 1 6.3696 9.8210 -7.0964 17 6 7.3311 11.7330 -6.9881 18 7 7.3986 11.8791 -8.2946 19 14 8.0045 13.0638 -5.8635 20 1 9.4341 12.7880 -5.5710 21 1 7.8817 14.3847 -6.5308 22 1 7.2332 13.0768 -4.5946 23 6 4.0602 2.5235 0.0002 24 6 3.4359 1.2865 -0.0002 25 8 4.1795 0.1478 -0.0013 26 6 5.6003 0.3008 -0.0015 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2146 2.3196 0.0014 31 1 1.3341 4.5115 0.0119 32 1 4.9417 4.9464 0.5149 33 1 3.3536 5.7503 0.5155 34 1 5.6010 6.2772 -3.5539 35 1 4.0100 7.0754 -3.5477 36 1 5.0482 9.1360 -2.6388 37 1 6.6389 8.3373 -2.6451 38 1 6.4757 8.0332 -5.1009 39 1 4.8850 8.8320 -5.0940 40 1 7.7984 12.6775 -8.6733 41 1 5.1385 2.5842 -0.0003 42 1 5.9067 0.8499 0.8890 43 1 6.0716 -0.6820 -0.0019 44 1 5.9064 0.8514 -0.8910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805339813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -168.809033 kcal Electronic energy + Delta-G solvation = -25580.779482 eV Core-core repulsion = 21589.291046 eV Total energy + Delta-G solvation = -3991.488437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82773 -41.26182 -39.43631 -38.45598 -37.51493 -34.93753 -34.68642 -33.29505 -31.35270 -29.69537 -28.27453 -28.10464 -27.82771 -26.95043 -23.40906 -23.16875 -22.68124 -21.65899 -19.65162 -19.43909 -18.69812 -18.14722 -17.97649 -17.54001 -17.39479 -17.10273 -17.01118 -16.16652 -16.07911 -16.05097 -15.75116 -15.43136 -15.21763 -14.94176 -14.56271 -14.42037 -14.05110 -13.95502 -13.51904 -13.34640 -13.21245 -13.06602 -13.04183 -12.76263 -12.60470 -12.37374 -12.27406 -12.17453 -12.09836 -12.06823 -11.95172 -11.79473 -11.50321 -11.45318 -11.16772 -10.61023 -9.73811 -9.00891 -8.82388 -8.52316 -6.24699 0.18826 0.34861 1.07530 1.19726 1.33231 1.46503 1.55504 1.88751 2.24772 2.33320 2.33984 2.64905 2.70831 2.85733 3.51475 3.75572 3.80109 3.83627 3.97480 4.02261 4.08818 4.13570 4.26655 4.29131 4.33651 4.36364 4.39579 4.40827 4.51664 4.52966 4.58102 4.65107 4.70769 4.73055 4.74917 4.99721 5.04227 5.12499 5.22081 5.46532 5.48799 5.67152 5.68826 6.07533 6.09736 6.57824 6.73204 6.91106 8.60739 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.001588 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.511675 B =17630.091802 C =17824.381919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.081 3.919 4 C -0.173 4.173 5 C -0.104 4.104 6 C -0.085 4.085 7 C -0.062 4.062 8 C 0.459 3.541 9 O -0.538 6.538 10 O -0.354 6.354 11 C 0.079 3.921 12 C -0.087 4.087 13 C -0.075 4.075 14 S -0.204 6.204 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.037 3.963 18 N -0.922 5.922 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.226 1.226 23 C -0.160 4.160 24 C 0.075 3.925 25 O -0.332 6.332 26 C 0.018 3.982 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.277 0.723 41 H 0.149 0.851 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 -21.703 25.629 35.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.192 4.192 5 C -0.122 4.122 6 C -0.085 4.085 7 C -0.099 4.099 8 C 0.304 3.696 9 O -0.427 6.427 10 O -0.271 6.271 11 C 0.003 3.997 12 C -0.125 4.125 13 C -0.224 4.224 14 S 0.024 5.976 15 C -0.676 4.676 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.560 5.560 19 Si 0.748 3.252 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.149 1.149 23 C -0.178 4.178 24 C 0.030 3.970 25 O -0.247 6.247 26 C -0.076 4.076 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.167 0.833 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.922 -21.477 25.978 35.431 hybrid contribution -0.088 -0.200 -1.942 1.954 sum -11.010 -21.677 24.036 34.188 Atomic orbital electron populations 1.23349 0.76528 1.05503 1.02292 1.86129 1.23290 1.26266 1.89098 1.18619 0.89578 0.85972 1.02312 1.21309 1.01148 0.90852 1.05863 1.21072 0.93798 0.98122 0.99219 1.19186 0.93777 0.93409 1.02131 1.20404 1.05808 0.94803 0.88853 1.24360 0.73220 0.78312 0.93719 1.90707 1.48521 1.55270 1.48228 1.86464 1.72190 1.37529 1.30903 1.22966 1.01219 0.96521 0.78978 1.21144 1.02627 0.95029 0.93736 1.22988 1.02393 0.97241 0.99765 1.83771 1.79636 1.24969 1.09195 1.22371 1.46051 1.08825 0.90309 0.93184 1.25812 0.94492 0.99946 0.96508 1.70043 1.44160 1.29583 1.12209 0.85694 0.80419 0.78424 0.80685 1.18517 1.18791 1.14916 1.21122 1.01151 0.90360 1.05213 1.18494 0.88828 0.86564 1.03134 1.86123 1.20522 1.28742 1.89289 1.23322 0.76884 1.05343 1.02055 0.91996 0.86610 0.91185 0.82400 0.83309 0.84018 0.83478 0.91261 0.91151 0.89439 0.89470 0.91249 0.91165 0.91373 0.83299 0.91132 0.86471 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.99 10.28 -79.70 -0.82 -7.81 16 3 C 0.08 1.72 6.70 22.57 0.15 1.87 16 4 C -0.17 -2.86 9.04 22.35 0.20 -2.66 16 5 C -0.10 -1.63 9.69 22.28 0.22 -1.41 16 6 C -0.08 -1.39 4.37 -19.86 -0.09 -1.48 16 7 C -0.06 -0.75 5.94 29.10 0.17 -0.58 16 8 C 0.46 9.77 7.95 71.23 0.57 10.34 16 9 O -0.54 -15.64 15.78 21.94 0.35 -15.29 16 10 O -0.35 -7.96 10.22 -51.41 -0.53 -8.48 16 11 C 0.08 1.99 5.47 71.98 0.39 2.39 16 12 C -0.09 -2.41 5.60 30.59 0.17 -2.24 16 13 C -0.08 -2.78 5.67 71.98 0.41 -2.37 16 14 S -0.20 -9.54 19.41 -56.49 -1.10 -10.63 16 15 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 16 H 0.05 3.20 8.03 -2.91 -0.02 3.18 16 17 C 0.04 2.17 5.50 84.86 0.47 2.64 16 18 N -0.92 -56.61 13.97 21.65 0.30 -56.31 16 19 Si 0.93 43.38 27.74 68.60 1.90 45.29 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.23 -10.07 6.74 99.48 0.67 -9.40 16 23 C -0.16 -2.91 8.69 22.35 0.19 -2.71 16 24 C 0.08 1.65 6.70 22.57 0.15 1.81 16 25 O -0.33 -7.34 10.28 -79.63 -0.82 -8.16 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 28 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 30 H 0.16 1.71 6.30 -2.91 -0.02 1.69 16 31 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.14 0.99 8.08 -2.38 -0.02 0.97 16 33 H 0.15 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 35 H 0.07 1.81 8.13 -2.38 -0.02 1.79 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 40 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 42 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 Total: -1.00 -78.26 388.55 6.17 -72.09 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.96 Total: 11.33 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 5.91 Total: -22.02 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.82 Total: -39.74 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.29 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.10 Total: -10.63 kcal Total: -78.26 6.17 -72.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805339813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.719 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds