Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35977 * 117.00237 * 2 1 4 4 C 1.38717 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.99959 * 179.97438 * 4 3 2 6 6 C 1.38716 * 119.99976 * 0.02562 * 5 4 3 7 7 O 1.35977 * 119.99995 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99939 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00038 * 0.02562 * 6 5 4 10 10 C 1.50697 * 120.00204 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.47266 * 84.99705 * 10 9 6 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47242 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47401 * 180.02562 * 16 15 14 18 18 C 1.76195 * 100.00232 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99847 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00209 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47291 * 89.99667 * 22 20 18 24 24 H 1.48497 * 109.47506 * 209.99922 * 22 20 18 25 25 H 1.48501 * 109.47205 * 330.00175 * 22 20 18 26 26 C 1.38151 * 119.99948 * 0.22770 * 9 6 5 27 27 H 1.09001 * 109.47363 * 300.00109 * 1 2 3 28 28 H 1.09006 * 109.46914 * 59.99873 * 1 2 3 29 29 H 1.08994 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00074 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.99746 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.46851 * 299.99495 * 8 7 6 33 33 H 1.08993 * 109.47470 * 59.99665 * 8 7 6 34 34 H 1.09003 * 109.47256 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47205 * 324.99799 * 10 9 6 36 36 H 1.08997 * 109.47395 * 205.00291 * 10 9 6 37 37 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 38 38 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 39 39 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 40 40 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 41 41 H 1.09004 * 109.47100 * 299.99832 * 16 15 14 42 42 H 1.08999 * 109.47046 * 60.00020 * 16 15 14 43 43 H 0.96994 * 120.00012 * 180.02562 * 21 20 18 44 44 H 1.08010 * 119.99955 * 179.72495 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9180 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8896 0.0005 8 6 3.0807 6.0457 0.0017 9 6 4.0585 2.5150 -0.0011 10 6 5.5634 2.5938 -0.0022 11 6 6.0597 2.7426 1.4129 12 8 5.2723 2.7803 2.3284 13 8 7.3767 2.8332 1.6562 14 6 7.7826 2.9753 3.0430 15 6 9.3081 3.0620 3.1215 16 6 9.7359 3.2111 4.5829 17 16 11.5406 3.3144 4.6759 18 6 11.7485 3.4770 6.4179 19 1 10.8847 3.4883 7.0661 20 6 13.0224 3.5906 6.9572 21 7 13.1777 3.7126 8.2587 22 14 14.5163 3.5718 5.8361 23 1 14.8391 4.9598 5.4182 24 1 15.6739 2.9921 6.5635 25 1 14.2237 2.7488 4.6352 26 6 3.4312 1.2841 -0.0069 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3297 4.5113 0.0011 32 1 2.4508 6.0380 -0.8879 33 1 2.4521 6.0373 0.8920 34 1 3.6985 6.9437 0.0011 35 1 5.8818 3.4539 -0.5913 36 1 5.9746 1.6831 -0.4377 37 1 7.3449 3.8830 3.4585 38 1 7.4383 2.1122 3.6126 39 1 9.7456 2.1542 2.7062 40 1 9.6528 3.9249 2.5518 41 1 9.2985 4.1189 4.9987 42 1 9.3912 2.3479 5.1523 43 1 14.0678 3.7924 8.6355 44 1 4.0194 0.3783 -0.0126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805346896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -147.798687 kcal Electronic energy + Delta-G solvation = -25834.798535 eV Core-core repulsion = 21844.221175 eV Total energy + Delta-G solvation = -3990.577360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08455 -40.20077 -39.29639 -37.09383 -36.42406 -33.62844 -33.13487 -32.44208 -30.44552 -28.75441 -27.61754 -27.24529 -26.32447 -25.54880 -22.78837 -22.28320 -21.39037 -20.76270 -18.43580 -17.89835 -17.78812 -17.33705 -17.32423 -16.55765 -16.43039 -16.05714 -15.83890 -15.16543 -15.00168 -14.91864 -14.84138 -14.31423 -14.03952 -13.68581 -13.22443 -13.18142 -12.94740 -12.88912 -12.74311 -12.55442 -12.35716 -12.14002 -11.97298 -11.90254 -11.50165 -11.16652 -11.12959 -11.06545 -10.94830 -10.80472 -10.60426 -10.29320 -10.21246 -9.81142 -9.32490 -9.01148 -8.59548 -8.06864 -6.96367 -6.28681 -4.01795 0.78506 1.11344 2.23524 2.57444 2.87479 2.99439 3.04306 3.30197 3.39473 3.45376 3.59522 4.18847 4.31137 4.31394 4.59480 4.62293 4.69114 4.73637 4.74289 4.78203 4.81920 4.90920 5.02012 5.04968 5.07377 5.08956 5.11629 5.15918 5.21715 5.28268 5.41480 5.44186 5.71942 5.74111 5.80160 5.86615 5.91779 6.09690 6.18419 6.37177 6.46265 6.62838 6.89023 7.10594 7.78507 7.94966 8.44370 9.16722 10.80727 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001736 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.812085 B =16129.575538 C =16690.020654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.092 3.908 4 C -0.164 4.164 5 C -0.169 4.169 6 C 0.113 3.887 7 O -0.314 6.314 8 C 0.028 3.972 9 C -0.069 4.069 10 C -0.065 4.065 11 C 0.464 3.536 12 O -0.502 6.502 13 O -0.357 6.357 14 C 0.073 3.927 15 C -0.101 4.101 16 C -0.084 4.084 17 S -0.206 6.206 18 C -0.505 4.505 19 H 0.089 0.911 20 C 0.092 3.908 21 N -0.881 5.881 22 Si 0.862 3.138 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.237 1.237 26 C -0.097 4.097 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.271 0.729 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.145 -1.806 -22.880 35.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.047 3.953 4 C -0.183 4.183 5 C -0.187 4.187 6 C 0.067 3.933 7 O -0.227 6.227 8 C -0.067 4.067 9 C -0.069 4.069 10 C -0.103 4.103 11 C 0.306 3.694 12 O -0.389 6.389 13 O -0.273 6.273 14 C -0.002 4.002 15 C -0.139 4.139 16 C -0.232 4.232 17 S 0.021 5.979 18 C -0.652 4.652 19 H 0.107 0.893 20 C -0.117 4.117 21 N -0.517 5.517 22 Si 0.687 3.313 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.161 1.161 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.153 -1.940 -23.216 35.024 hybrid contribution -0.826 0.427 1.068 1.416 sum -26.979 -1.512 -22.148 34.938 Atomic orbital electron populations 1.23040 0.78502 1.03979 1.01194 1.86084 1.21216 1.26529 1.89275 1.18764 0.92042 0.84301 1.00182 1.21028 1.00006 0.91661 1.05600 1.20968 0.93033 0.98494 1.06238 1.18631 0.90768 0.85231 0.98643 1.86080 1.35606 1.12193 1.88821 1.23063 0.95966 0.86492 1.01173 1.18340 0.93611 0.90276 1.04719 1.20094 0.91398 1.06796 0.91973 1.23408 0.80828 0.72966 0.92160 1.90680 1.56472 1.45086 1.46657 1.86458 1.25494 1.83086 1.32311 1.23191 0.96202 1.02446 0.78330 1.21323 0.91539 1.04257 0.96803 1.22950 0.99360 1.04110 0.96829 1.84151 1.02809 1.96642 1.14260 1.22131 0.97277 1.57818 0.87992 0.89314 1.24795 0.98608 0.93317 0.94932 1.69939 1.23709 1.47604 1.10480 0.86666 0.82442 0.80026 0.82189 1.19339 1.20058 1.16127 1.20092 0.91577 0.97185 1.02656 0.92713 0.92791 0.88203 0.85142 0.84994 0.92727 0.92639 0.88056 0.86139 0.86522 0.91116 0.91094 0.90259 0.90273 0.91050 0.90989 0.91945 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.92 10.50 -19.67 -0.21 -3.13 16 3 C 0.09 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.16 -1.39 9.03 -39.45 -0.36 -1.74 16 5 C -0.17 -1.47 9.03 -39.45 -0.36 -1.83 16 6 C 0.11 1.18 6.66 -39.24 -0.26 0.92 16 7 O -0.31 -3.19 9.63 -19.67 -0.19 -3.38 16 8 C 0.03 0.18 9.81 101.05 0.99 1.17 16 9 C -0.07 -0.72 4.39 -104.49 -0.46 -1.18 16 10 C -0.07 -0.62 5.66 -29.04 -0.16 -0.79 16 11 C 0.46 6.20 7.95 36.01 0.29 6.48 16 12 O -0.50 -8.24 15.78 -18.75 -0.30 -8.54 16 13 O -0.36 -4.94 10.22 -39.27 -0.40 -5.34 16 14 C 0.07 1.07 5.47 37.16 0.20 1.27 16 15 C -0.10 -1.59 5.60 -26.73 -0.15 -1.74 16 16 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 17 S -0.21 -5.03 19.41 -107.50 -2.09 -7.12 16 18 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 19 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 20 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 21 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 22 Si 0.86 21.53 27.74 -169.99 -4.72 16.82 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 26 C -0.10 -0.98 9.61 -39.45 -0.38 -1.36 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.13 0.77 6.29 -52.49 -0.33 0.44 16 31 H 0.13 0.83 6.29 -52.49 -0.33 0.50 16 32 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 33 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 36 H 0.12 0.79 8.05 -51.93 -0.42 0.38 16 37 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 38 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.38 8.14 -51.91 -0.42 0.96 16 42 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -35.29 387.60 -7.22 -42.50 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.45 Total: -1.39 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 0.51 Total: -10.24 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.78 Total: -26.02 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.09 Total: -20.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.72 Total: 16.82 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -2.09 Total: -7.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.29 -7.22 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805346896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.295 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds