Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35977 * 117.00237 * 2 1 4 4 C 1.38717 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.99959 * 179.97438 * 4 3 2 6 6 C 1.38716 * 119.99976 * 0.02562 * 5 4 3 7 7 O 1.35977 * 119.99995 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99939 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00038 * 0.02562 * 6 5 4 10 10 C 1.50697 * 120.00204 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.47266 * 84.99705 * 10 9 6 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47242 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47401 * 180.02562 * 16 15 14 18 18 C 1.76195 * 100.00232 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99847 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00209 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47291 * 89.99667 * 22 20 18 24 24 H 1.48497 * 109.47506 * 209.99922 * 22 20 18 25 25 H 1.48501 * 109.47205 * 330.00175 * 22 20 18 26 26 C 1.38151 * 119.99948 * 0.22770 * 9 6 5 27 27 H 1.09001 * 109.47363 * 300.00109 * 1 2 3 28 28 H 1.09006 * 109.46914 * 59.99873 * 1 2 3 29 29 H 1.08994 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00074 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.99746 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.46851 * 299.99495 * 8 7 6 33 33 H 1.08993 * 109.47470 * 59.99665 * 8 7 6 34 34 H 1.09003 * 109.47256 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47205 * 324.99799 * 10 9 6 36 36 H 1.08997 * 109.47395 * 205.00291 * 10 9 6 37 37 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 38 38 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 39 39 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 40 40 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 41 41 H 1.09004 * 109.47100 * 299.99832 * 16 15 14 42 42 H 1.08999 * 109.47046 * 60.00020 * 16 15 14 43 43 H 0.96994 * 120.00012 * 180.02562 * 21 20 18 44 44 H 1.08010 * 119.99955 * 179.72495 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9180 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8896 0.0005 8 6 3.0807 6.0457 0.0017 9 6 4.0585 2.5150 -0.0011 10 6 5.5634 2.5938 -0.0022 11 6 6.0597 2.7426 1.4129 12 8 5.2723 2.7803 2.3284 13 8 7.3767 2.8332 1.6562 14 6 7.7826 2.9753 3.0430 15 6 9.3081 3.0620 3.1215 16 6 9.7359 3.2111 4.5829 17 16 11.5406 3.3144 4.6759 18 6 11.7485 3.4770 6.4179 19 1 10.8847 3.4883 7.0661 20 6 13.0224 3.5906 6.9572 21 7 13.1777 3.7126 8.2587 22 14 14.5163 3.5718 5.8361 23 1 14.8391 4.9598 5.4182 24 1 15.6739 2.9921 6.5635 25 1 14.2237 2.7488 4.6352 26 6 3.4312 1.2841 -0.0069 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3297 4.5113 0.0011 32 1 2.4508 6.0380 -0.8879 33 1 2.4521 6.0373 0.8920 34 1 3.6985 6.9437 0.0011 35 1 5.8818 3.4539 -0.5913 36 1 5.9746 1.6831 -0.4377 37 1 7.3449 3.8830 3.4585 38 1 7.4383 2.1122 3.6126 39 1 9.7456 2.1542 2.7062 40 1 9.6528 3.9249 2.5518 41 1 9.2985 4.1189 4.9987 42 1 9.3912 2.3479 5.1523 43 1 14.0678 3.7924 8.6355 44 1 4.0194 0.3783 -0.0126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805346896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -169.073324 kcal Electronic energy + Delta-G solvation = -25835.721072 eV Core-core repulsion = 21844.221175 eV Total energy + Delta-G solvation = -3991.499897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87211 -41.13159 -39.91626 -38.01261 -37.28707 -34.94595 -34.68516 -33.90273 -31.06933 -29.50499 -28.30005 -27.98176 -27.76630 -27.26725 -23.56438 -23.07209 -22.66784 -21.63868 -19.64739 -19.08323 -18.72625 -18.48540 -18.08461 -17.58185 -17.42140 -17.10163 -16.71051 -16.41862 -16.09556 -16.01484 -15.72536 -15.49607 -14.95010 -14.78261 -14.43078 -14.39540 -14.11842 -13.91213 -13.70434 -13.49568 -13.33421 -13.06895 -13.02373 -12.87703 -12.60726 -12.47557 -12.45218 -12.37106 -12.24626 -11.81178 -11.71340 -11.53821 -11.50772 -11.34891 -11.16596 -10.60993 -10.01230 -9.00851 -8.73300 -8.52175 -6.24503 0.09915 0.42650 1.07162 1.20534 1.33294 1.46576 1.55132 1.88142 2.25037 2.31890 2.43958 2.65128 2.70548 2.85774 3.50829 3.72317 3.77300 3.82967 3.97185 4.04086 4.04907 4.14669 4.23771 4.27688 4.31984 4.39200 4.40841 4.42265 4.46476 4.52780 4.61953 4.65166 4.72248 4.75930 4.80976 4.99176 5.06894 5.12038 5.20695 5.26959 5.45383 5.54743 5.69137 6.09922 6.29695 6.49911 6.73051 6.91215 8.60904 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001736 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.812085 B =16129.575538 C =16690.020654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.078 3.922 4 C -0.164 4.164 5 C -0.172 4.172 6 C 0.095 3.905 7 O -0.334 6.334 8 C 0.019 3.981 9 C -0.087 4.087 10 C -0.059 4.059 11 C 0.465 3.535 12 O -0.537 6.537 13 O -0.355 6.355 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.075 4.075 17 S -0.204 6.204 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.037 3.963 21 N -0.922 5.922 22 Si 0.927 3.073 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.227 1.227 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.277 0.723 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.789 -1.813 -25.373 37.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.033 3.967 4 C -0.182 4.182 5 C -0.191 4.191 6 C 0.050 3.950 7 O -0.248 6.248 8 C -0.075 4.075 9 C -0.087 4.087 10 C -0.095 4.095 11 C 0.309 3.691 12 O -0.426 6.426 13 O -0.272 6.272 14 C 0.003 3.997 15 C -0.125 4.125 16 C -0.223 4.223 17 S 0.024 5.976 18 C -0.675 4.675 19 H 0.068 0.932 20 C -0.168 4.168 21 N -0.560 5.560 22 Si 0.748 3.252 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.150 1.150 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.812 -1.946 -25.721 37.205 hybrid contribution -0.835 0.436 1.868 2.092 sum -27.648 -1.510 -23.853 36.546 Atomic orbital electron populations 1.23322 0.76596 1.05510 1.02159 1.86056 1.23302 1.26485 1.89282 1.18977 0.92283 0.85030 1.00397 1.21340 1.01295 0.91109 1.04496 1.21280 0.92754 0.99571 1.05462 1.18893 0.91588 0.85437 0.99098 1.86040 1.36981 1.12842 1.88921 1.23306 0.96330 0.85697 1.02153 1.18512 0.94079 0.90619 1.05532 1.20221 0.91119 1.08726 0.89479 1.24189 0.80053 0.71538 0.93327 1.90666 1.57072 1.46829 1.48040 1.86457 1.26142 1.83116 1.31448 1.22973 0.95190 1.02415 0.79096 1.21144 0.92419 1.05004 0.93951 1.22979 0.95624 1.04048 0.99665 1.83780 1.07211 1.96648 1.09931 1.22364 0.96435 1.57917 0.90787 0.93156 1.25809 1.01815 0.92641 0.96498 1.70043 1.24935 1.48506 1.12484 0.85693 0.78503 0.80598 0.80435 1.18501 1.18725 1.14982 1.20290 0.92217 0.97444 1.03057 0.92123 0.91352 0.86550 0.82680 0.82770 0.90864 0.92470 0.86865 0.84777 0.83699 0.91336 0.91139 0.89431 0.89514 0.91214 0.91126 0.91362 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.92 10.50 -93.30 -0.98 -6.90 16 3 C 0.08 1.47 6.69 22.49 0.15 1.62 16 4 C -0.16 -2.52 9.03 22.35 0.20 -2.32 16 5 C -0.17 -2.77 9.03 22.35 0.20 -2.56 16 6 C 0.10 1.91 6.66 22.49 0.15 2.06 16 7 O -0.33 -6.48 9.63 -93.30 -0.90 -7.38 16 8 C 0.02 0.22 9.81 113.37 1.11 1.33 16 9 C -0.09 -1.76 4.39 -19.78 -0.09 -1.85 16 10 C -0.06 -1.04 5.66 29.10 0.16 -0.88 16 11 C 0.46 11.98 7.95 71.24 0.57 12.55 16 12 O -0.54 -17.56 15.78 21.98 0.35 -17.21 16 13 O -0.35 -9.31 10.22 -51.46 -0.53 -9.84 16 14 C 0.08 2.20 5.47 71.98 0.39 2.60 16 15 C -0.09 -2.58 5.60 30.59 0.17 -2.41 16 16 C -0.07 -2.86 5.67 71.98 0.41 -2.45 16 17 S -0.20 -9.76 19.41 -56.49 -1.10 -10.86 16 18 C -0.53 -31.32 10.04 67.95 0.68 -30.64 16 19 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 20 C 0.04 2.19 5.50 84.86 0.47 2.66 16 21 N -0.92 -57.08 13.97 21.65 0.30 -56.77 16 22 Si 0.93 43.99 27.74 68.60 1.90 45.89 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.23 -10.28 6.74 99.48 0.67 -9.61 16 26 C -0.11 -2.21 9.61 22.35 0.21 -1.99 16 27 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.16 1.46 6.29 -2.91 -0.02 1.44 16 31 H 0.15 1.62 6.29 -2.91 -0.02 1.60 16 32 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 33 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.13 2.01 7.69 -2.38 -0.02 1.99 16 36 H 0.15 1.68 8.05 -2.39 -0.02 1.66 16 37 H 0.07 1.95 8.13 -2.39 -0.02 1.94 16 38 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 39 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 43 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -76.99 387.60 5.93 -71.06 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.96 Total: 13.03 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 5.91 Total: -21.02 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.30 Total: -56.77 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.06 Total: -41.33 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.10 Total: -10.86 kcal Total: -76.99 5.93 -71.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805346896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.010 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds