Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.08996 * 109.47307 * 305.00453 * 9 8 7 11 11 O 1.42907 * 109.46998 * 65.00108 * 9 8 7 12 12 C 1.50703 * 109.47128 * 184.99887 * 9 8 7 13 13 O 1.20828 * 119.99944 * 244.99791 * 12 9 8 14 14 O 1.34228 * 119.99515 * 65.00232 * 12 9 8 15 15 C 1.45200 * 116.99401 * 179.97438 * 14 12 9 16 16 C 1.53002 * 109.47075 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47351 * 179.97438 * 16 15 14 18 18 S 1.81006 * 109.47215 * 179.97438 * 17 16 15 19 19 C 1.76202 * 99.99969 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00092 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99809 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46724 * 120.00479 * 23 21 19 26 26 H 1.48497 * 109.46910 * 239.99887 * 23 21 19 27 27 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 28 28 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 30 30 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 31 31 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 33 33 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 34 34 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 35 35 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 36 36 H 0.96705 * 113.99799 * 60.00066 * 11 9 8 37 37 H 1.09004 * 109.47165 * 299.99421 * 15 14 12 38 38 H 1.08994 * 109.47448 * 60.00060 * 15 14 12 39 39 H 1.09007 * 109.46685 * 300.00027 * 16 15 14 40 40 H 1.09002 * 109.47366 * 59.99341 * 16 15 14 41 41 H 1.08997 * 109.47562 * 299.99846 * 17 16 15 42 42 H 1.09008 * 109.47150 * 59.99914 * 17 16 15 43 43 H 0.96989 * 119.99757 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.02798 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.5908 3.4411 1.9828 11 8 5.7582 1.3842 2.0809 12 6 7.5631 2.8288 1.4450 13 8 8.2915 1.9584 1.8595 14 8 8.0837 3.9779 0.9863 15 6 9.5297 4.1056 1.0187 16 6 9.9337 5.4719 0.4611 17 6 11.4573 5.6068 0.4958 18 16 11.9352 7.2229 -0.1646 19 6 13.6868 7.1108 -0.0099 20 1 14.1368 6.2179 0.3982 21 6 14.4882 8.1702 -0.4124 22 7 13.9397 9.2587 -0.9093 23 14 16.3453 8.0511 -0.2490 24 1 16.7075 6.7339 0.3333 25 1 16.9698 8.1880 -1.5894 26 1 16.8347 9.1366 0.6383 27 6 3.4311 1.2848 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 0.2128 2.3203 0.0108 32 1 1.3339 4.5114 0.0034 33 1 3.7922 4.6381 0.0022 34 1 5.9714 1.7294 -0.5140 35 1 5.8757 3.5068 -0.5126 36 1 6.1526 0.6118 1.6530 37 1 9.8795 4.0156 2.0472 38 1 9.9777 3.3184 0.4124 39 1 9.5839 5.5624 -0.5674 40 1 9.4856 6.2589 1.0677 41 1 11.8067 5.5165 1.5243 42 1 11.9057 4.8198 -0.1107 43 1 14.4997 9.9988 -1.1909 44 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805535921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -167.849375 kcal Electronic energy + Delta-G solvation = -25445.127079 eV Core-core repulsion = 21453.680256 eV Total energy + Delta-G solvation = -3991.446823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93225 -40.41999 -38.43192 -37.41239 -36.31944 -33.65873 -33.04688 -32.46490 -31.00260 -29.50063 -27.73980 -26.72634 -25.58012 -24.83544 -22.92521 -21.56141 -21.40602 -21.21464 -18.54924 -18.08625 -17.43818 -17.37413 -16.79969 -16.63089 -16.35732 -16.17499 -15.88254 -15.47841 -14.83995 -14.62322 -14.57589 -14.33133 -14.04953 -13.69501 -13.54400 -13.05522 -12.87339 -12.79065 -12.45374 -12.39060 -12.14458 -12.11279 -11.90451 -11.59998 -11.40086 -11.23670 -11.22729 -11.18561 -11.04131 -10.91220 -10.69933 -10.34971 -10.32154 -9.64490 -9.17653 -9.10510 -8.55368 -8.38132 -6.58965 -6.27111 -3.98226 0.90207 1.10444 1.93375 2.39079 2.85939 3.19136 3.20271 3.28220 3.36932 3.51096 3.78516 4.17729 4.28278 4.39175 4.41075 4.52180 4.59406 4.69113 4.70195 4.73543 4.97760 5.00900 5.05347 5.07885 5.09934 5.12422 5.14952 5.33834 5.35130 5.41432 5.43566 5.67525 5.73072 5.83833 5.92429 6.07112 6.10629 6.22175 6.33884 6.37287 6.40839 6.62715 7.00799 7.02743 7.54237 7.57400 8.32976 9.19612 10.81138 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.001545 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.481137 B =18122.404286 C =18819.667750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.040 4.040 8 C -0.110 4.110 9 C 0.128 3.872 10 H 0.140 0.860 11 O -0.527 6.527 12 C 0.430 3.570 13 O -0.502 6.502 14 O -0.351 6.351 15 C 0.071 3.929 16 C -0.098 4.098 17 C -0.115 4.115 18 S -0.123 6.123 19 C -0.518 4.518 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.869 5.869 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.134 4.134 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.384 0.616 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.267 0.733 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.001 -16.066 1.420 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.040 4.040 8 C -0.147 4.147 9 C 0.067 3.933 10 H 0.157 0.843 11 O -0.332 6.332 12 C 0.272 3.728 13 O -0.389 6.389 14 O -0.268 6.268 15 C -0.004 4.004 16 C -0.136 4.136 17 C -0.264 4.264 18 S 0.105 5.895 19 C -0.667 4.667 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.505 5.505 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.153 4.153 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -28.588 -15.088 1.461 32.358 hybrid contribution 2.153 -1.266 0.246 2.509 sum -26.435 -16.354 1.707 31.132 Atomic orbital electron populations 1.23055 0.78367 1.03969 1.01346 1.86074 1.21393 1.26980 1.88744 1.18989 0.92293 0.84166 0.96509 1.21250 1.00011 0.92504 1.09122 1.20925 0.94566 0.97021 0.97191 1.21035 0.93836 0.98175 1.03755 1.19317 0.94280 0.92494 0.97883 1.21280 0.92254 1.05731 0.95472 1.21494 0.86579 0.90075 0.95174 0.84296 1.86691 1.74294 1.15038 1.57197 1.24725 0.93220 0.80489 0.74381 1.90695 1.61901 1.43578 1.42770 1.86482 1.26751 1.38264 1.75296 1.23320 0.75130 0.99665 1.02259 1.21289 0.95428 0.94196 1.02681 1.23185 0.95608 1.04060 1.03517 1.84649 1.08357 1.14446 1.82079 1.22742 0.90022 1.05150 1.48754 0.90785 1.25015 0.99684 0.94524 0.94493 1.70021 1.35810 1.05022 1.39614 0.86098 0.82971 0.78341 0.78038 1.19572 1.20528 1.20521 1.20243 0.91265 0.98109 1.05642 0.88235 0.92616 0.92665 0.85612 0.85605 0.85346 0.89553 0.87717 0.76679 0.91080 0.91089 0.90291 0.90283 0.91726 0.91741 0.92281 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.71 10.50 -19.41 -0.20 -2.92 16 3 C 0.13 1.11 6.69 -39.22 -0.26 0.84 16 4 C -0.21 -1.58 9.04 -39.43 -0.36 -1.93 16 5 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 6 C -0.15 -1.13 9.70 -39.56 -0.38 -1.51 16 7 C -0.04 -0.31 4.97 -104.65 -0.52 -0.83 16 8 C -0.11 -0.78 5.01 -27.88 -0.14 -0.92 16 9 C 0.13 1.11 3.48 -27.88 -0.10 1.01 16 10 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 11 O -0.53 -4.91 12.49 -55.13 -0.69 -5.60 16 12 C 0.43 5.08 7.27 36.01 0.26 5.35 16 13 O -0.50 -7.40 16.07 -25.46 -0.41 -7.81 16 14 O -0.35 -4.42 10.19 -39.25 -0.40 -4.82 16 15 C 0.07 0.98 5.47 37.16 0.20 1.19 16 16 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 17 C -0.12 -2.25 5.67 37.15 0.21 -2.04 16 18 S -0.12 -3.16 21.44 -107.50 -2.30 -5.47 16 19 C -0.52 -14.70 9.50 30.94 0.29 -14.40 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 22 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.13 -1.15 9.34 -39.43 -0.37 -1.52 16 28 H 0.10 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 30 H 0.05 0.20 7.68 -51.93 -0.40 -0.20 16 31 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.10 0.70 8.06 -51.93 -0.42 0.28 16 36 H 0.38 2.64 8.79 45.56 0.40 3.04 16 37 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 42 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -34.39 393.81 -8.93 -43.31 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.76 Total: 0.33 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.81 Total: -14.37 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.73 Total: -24.93 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.70 Total: -21.14 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.30 Total: -5.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.39 -8.93 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805535921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.536 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds