Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.08996 * 109.47307 * 305.00453 * 9 8 7 11 11 O 1.42907 * 109.46998 * 65.00108 * 9 8 7 12 12 C 1.50703 * 109.47128 * 184.99887 * 9 8 7 13 13 O 1.20828 * 119.99944 * 244.99791 * 12 9 8 14 14 O 1.34228 * 119.99515 * 65.00232 * 12 9 8 15 15 C 1.45200 * 116.99401 * 179.97438 * 14 12 9 16 16 C 1.53002 * 109.47075 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47351 * 179.97438 * 16 15 14 18 18 S 1.81006 * 109.47215 * 179.97438 * 17 16 15 19 19 C 1.76202 * 99.99969 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00092 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99809 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46724 * 120.00479 * 23 21 19 26 26 H 1.48497 * 109.46910 * 239.99887 * 23 21 19 27 27 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 28 28 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 30 30 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 31 31 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 33 33 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 34 34 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 35 35 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 36 36 H 0.96705 * 113.99799 * 60.00066 * 11 9 8 37 37 H 1.09004 * 109.47165 * 299.99421 * 15 14 12 38 38 H 1.08994 * 109.47448 * 60.00060 * 15 14 12 39 39 H 1.09007 * 109.46685 * 300.00027 * 16 15 14 40 40 H 1.09002 * 109.47366 * 59.99341 * 16 15 14 41 41 H 1.08997 * 109.47562 * 299.99846 * 17 16 15 42 42 H 1.09008 * 109.47150 * 59.99914 * 17 16 15 43 43 H 0.96989 * 119.99757 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.02798 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.5908 3.4411 1.9828 11 8 5.7582 1.3842 2.0809 12 6 7.5631 2.8288 1.4450 13 8 8.2915 1.9584 1.8595 14 8 8.0837 3.9779 0.9863 15 6 9.5297 4.1056 1.0187 16 6 9.9337 5.4719 0.4611 17 6 11.4573 5.6068 0.4958 18 16 11.9352 7.2229 -0.1646 19 6 13.6868 7.1108 -0.0099 20 1 14.1368 6.2179 0.3982 21 6 14.4882 8.1702 -0.4124 22 7 13.9397 9.2587 -0.9093 23 14 16.3453 8.0511 -0.2490 24 1 16.7075 6.7339 0.3333 25 1 16.9698 8.1880 -1.5894 26 1 16.8347 9.1366 0.6383 27 6 3.4311 1.2848 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 0.2128 2.3203 0.0108 32 1 1.3339 4.5114 0.0034 33 1 3.7922 4.6381 0.0022 34 1 5.9714 1.7294 -0.5140 35 1 5.8757 3.5068 -0.5126 36 1 6.1526 0.6118 1.6530 37 1 9.8795 4.0156 2.0472 38 1 9.9777 3.3184 0.4124 39 1 9.5839 5.5624 -0.5674 40 1 9.4856 6.2589 1.0677 41 1 11.8067 5.5165 1.5243 42 1 11.9057 4.8198 -0.1107 43 1 14.4997 9.9988 -1.1909 44 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805535921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -188.534162 kcal Electronic energy + Delta-G solvation = -25446.024039 eV Core-core repulsion = 21453.680256 eV Total energy + Delta-G solvation = -3992.343783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83783 -41.02175 -39.09605 -38.20086 -37.21656 -34.95367 -34.58887 -33.69537 -31.54395 -30.19401 -28.27573 -28.03338 -27.42502 -25.68097 -23.47144 -22.80808 -22.26268 -21.91391 -19.65279 -19.22301 -18.79811 -18.22615 -17.76650 -17.22422 -16.92559 -16.90236 -16.81720 -16.57306 -16.31495 -16.05170 -15.68075 -15.13487 -14.93654 -14.58887 -14.39203 -14.22358 -13.99387 -13.81118 -13.54792 -13.18231 -13.09507 -12.96657 -12.90716 -12.71812 -12.62004 -12.44360 -12.40798 -12.39075 -12.17394 -11.88344 -11.74677 -11.56110 -11.53010 -11.16186 -11.11547 -10.35769 -9.74915 -9.11271 -8.67685 -8.38628 -6.14723 0.33164 0.53799 1.00177 1.25761 1.38340 1.40170 1.51679 1.81589 2.26597 2.40247 2.79557 2.96204 3.11972 3.27935 3.51814 3.76864 3.84187 3.87469 3.93237 3.97349 3.99481 4.14931 4.22079 4.31831 4.32352 4.40000 4.45775 4.46367 4.54992 4.60693 4.68523 4.74169 4.82016 4.87657 5.02304 5.10298 5.14551 5.37048 5.38293 5.40150 5.53547 5.66518 5.85759 6.17672 6.37598 6.49317 6.62630 7.04375 8.70932 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.001545 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.481137 B =18122.404286 C =18819.667750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.107 3.893 4 C -0.215 4.215 5 C -0.085 4.085 6 C -0.159 4.159 7 C -0.045 4.045 8 C -0.102 4.102 9 C 0.138 3.862 10 H 0.152 0.848 11 O -0.538 6.538 12 C 0.434 3.566 13 O -0.533 6.533 14 O -0.349 6.349 15 C 0.078 3.922 16 C -0.085 4.085 17 C -0.093 4.093 18 S -0.182 6.182 19 C -0.541 4.541 20 H 0.073 0.927 21 C 0.018 3.982 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.151 4.151 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.393 0.607 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.272 0.728 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.615 -16.566 1.590 33.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.063 3.937 4 C -0.234 4.234 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.045 4.045 8 C -0.139 4.139 9 C 0.077 3.923 10 H 0.169 0.831 11 O -0.345 6.345 12 C 0.278 3.722 13 O -0.422 6.422 14 O -0.265 6.265 15 C 0.003 3.997 16 C -0.124 4.124 17 C -0.242 4.242 18 S 0.046 5.954 19 C -0.689 4.689 20 H 0.091 0.909 21 C -0.187 4.187 22 N -0.542 5.542 23 Si 0.815 3.185 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.170 4.170 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.244 0.756 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.226 -15.595 1.626 33.166 hybrid contribution 2.203 -1.182 0.210 2.508 sum -27.023 -16.777 1.837 31.860 Atomic orbital electron populations 1.23303 0.76636 1.05376 1.02154 1.86039 1.23330 1.27198 1.88851 1.19228 0.92664 0.84761 0.97097 1.21514 1.01021 0.92262 1.08582 1.21245 0.94767 0.97735 0.96499 1.21307 0.94250 0.98651 1.03457 1.19382 0.94531 0.92473 0.98088 1.21230 0.91857 1.06476 0.94375 1.21592 0.84128 0.90224 0.96344 0.83105 1.86672 1.74284 1.15664 1.57854 1.25409 0.94243 0.79514 0.73079 1.90686 1.62863 1.44428 1.44226 1.86479 1.25749 1.38844 1.75429 1.23054 0.76192 0.98330 1.02118 1.21107 0.92531 0.95537 1.03220 1.23083 0.98286 0.99882 1.02977 1.84601 1.07951 1.19700 1.83115 1.23097 0.91330 1.05450 1.49051 0.90873 1.26028 1.04964 0.93961 0.93788 1.70142 1.37835 1.05845 1.40406 0.84985 0.76426 0.78696 0.78387 1.18776 1.19649 1.19678 1.20419 0.91648 0.98560 1.06324 0.86658 0.91856 0.91734 0.83865 0.83540 0.83944 0.88869 0.86959 0.75598 0.91123 0.90677 0.89882 0.90145 0.91517 0.91360 0.91891 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.66 10.50 -92.38 -0.97 -6.63 16 3 C 0.11 1.83 6.69 22.51 0.15 1.98 16 4 C -0.22 -2.95 9.04 22.37 0.20 -2.75 16 5 C -0.08 -1.06 10.04 22.25 0.22 -0.84 16 6 C -0.16 -2.12 9.70 22.28 0.22 -1.91 16 7 C -0.04 -0.65 4.97 -19.88 -0.10 -0.75 16 8 C -0.10 -1.29 5.01 29.85 0.15 -1.14 16 9 C 0.14 2.18 3.48 29.85 0.10 2.28 16 10 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 11 O -0.54 -9.46 12.49 -129.95 -1.62 -11.08 16 12 C 0.43 9.65 7.27 71.24 0.52 10.17 16 13 O -0.53 -15.20 16.07 28.38 0.46 -14.75 16 14 O -0.35 -8.16 10.19 -51.40 -0.52 -8.69 16 15 C 0.08 2.05 5.47 71.98 0.39 2.44 16 16 C -0.09 -2.57 5.60 30.59 0.17 -2.40 16 17 C -0.09 -3.59 5.67 71.98 0.41 -3.19 16 18 S -0.18 -9.44 21.44 -56.49 -1.21 -10.65 16 19 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 20 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 21 C 0.02 1.00 5.49 84.86 0.47 1.47 16 22 N -0.91 -53.92 13.22 21.65 0.29 -53.64 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 C -0.15 -2.53 9.34 22.37 0.21 -2.32 16 28 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.40 7.65 -2.39 -0.02 0.39 16 30 H 0.06 0.39 7.68 -2.39 -0.02 0.37 16 31 H 0.14 1.31 6.30 -2.91 -0.02 1.29 16 32 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.09 1.05 8.09 -2.38 -0.02 1.03 16 35 H 0.11 1.27 8.06 -2.39 -0.02 1.25 16 36 H 0.39 5.12 8.79 -74.05 -0.65 4.46 16 37 H 0.07 1.87 8.13 -2.38 -0.02 1.85 16 38 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.27 14.98 8.31 -92.72 -0.77 14.21 16 44 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.70 393.81 3.67 -70.03 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.36 Total: 15.75 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.87 Total: -25.91 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.29 Total: -53.64 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -2.66 Total: -41.14 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.21 Total: -10.65 kcal Total: -73.70 3.67 -70.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805535921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.501 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds