Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47354 * 2 1 4 4 C 1.50702 * 109.47056 * 240.00044 * 2 1 3 5 5 O 1.20821 * 120.00063 * 245.52018 * 4 2 1 6 6 O 1.34230 * 119.99771 * 65.51579 * 4 2 1 7 7 C 1.45202 * 116.99908 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47135 * 180.02562 * 7 6 4 9 9 O 1.42893 * 109.47325 * 65.00501 * 8 7 6 10 10 C 1.42898 * 114.00407 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47452 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99843 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00176 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00232 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00092 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47157 * 90.00347 * 15 13 11 17 17 H 1.48507 * 109.47000 * 210.00174 * 15 13 11 18 18 H 1.48493 * 109.47167 * 329.99940 * 15 13 11 19 19 C 1.52996 * 109.47523 * 119.99873 * 2 1 3 20 20 H 1.08999 * 109.69234 * 174.81838 * 19 2 1 21 21 O 1.43026 * 109.68553 * 54.28488 * 19 2 1 22 22 C 1.43039 * 114.24531 * 188.23000 * 21 19 2 23 23 C 1.53429 * 109.08644 * 71.25788 * 22 21 19 24 24 C 1.51405 * 107.90044 * 312.53431 * 23 22 21 25 25 S 1.75506 * 126.27251 * 195.52037 * 24 23 22 26 26 C 1.75809 * 91.03393 * 179.97438 * 25 24 23 27 27 C 1.33067 * 109.61546 * 0.03746 * 26 25 24 28 28 C 1.34872 * 123.67900 * 15.52157 * 24 23 22 29 29 H 1.09003 * 109.47110 * 300.00272 * 1 2 3 30 30 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47333 * 59.99647 * 1 2 3 32 32 H 1.08996 * 109.47219 * 300.00527 * 7 6 4 33 33 H 1.09001 * 109.46752 * 59.99922 * 7 6 4 34 34 H 1.09001 * 109.46988 * 185.00136 * 8 7 6 35 35 H 1.09002 * 109.47369 * 305.00009 * 8 7 6 36 36 H 1.08996 * 109.47083 * 299.99718 * 10 9 8 37 37 H 1.09004 * 109.47130 * 59.99755 * 10 9 8 38 38 H 0.96998 * 120.00753 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.53245 * 191.14026 * 22 21 19 40 40 H 1.09002 * 109.54018 * 311.29301 * 22 21 19 41 41 H 1.09002 * 109.77055 * 72.13690 * 23 22 21 42 42 H 1.08997 * 109.77828 * 192.87558 * 23 22 21 43 43 H 1.08003 * 125.19007 * 179.97438 * 26 25 24 44 44 H 1.08002 * 122.18249 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.6424 -1.7476 -1.1225 6 8 1.8017 -0.1908 -2.4465 7 6 2.3152 -0.9287 -3.5868 8 6 1.9582 -0.1874 -4.8767 9 8 2.6341 1.0712 -4.9055 10 6 2.3681 1.8472 -6.0755 11 6 3.1276 3.1467 -5.9999 12 1 3.7514 3.3585 -5.1441 13 6 3.0269 4.0646 -7.0237 14 7 2.2676 3.8065 -8.0661 15 14 3.9689 5.6750 -6.9303 16 1 5.3072 5.5023 -7.5502 17 1 3.2188 6.7302 -7.6579 18 1 4.1294 6.0728 -5.5087 19 6 2.0400 -0.7212 1.2492 20 1 3.1260 -0.8042 1.2076 21 8 1.4595 -2.0263 1.3229 22 6 1.7227 -2.7179 2.5469 23 6 0.9226 -2.0585 3.6779 24 6 1.1282 -0.5615 3.5818 25 16 0.7632 0.6189 4.8282 26 6 1.3217 1.9282 3.7965 27 6 1.7308 1.4347 2.6304 28 6 1.6312 0.0560 2.4933 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 3.3987 -1.0150 -3.5057 33 1 1.8719 -1.9243 -3.6047 34 1 2.2650 -0.7843 -5.7356 35 1 0.8814 -0.0225 -4.9149 36 1 2.6837 1.2924 -6.9590 37 1 1.2998 2.0544 -6.1390 38 1 2.1964 4.4524 -8.7862 39 1 1.4221 -3.7610 2.4480 40 1 2.7876 -2.6655 2.7736 41 1 -0.1359 -2.2933 3.5662 42 1 1.2805 -2.4195 4.6420 43 1 1.3304 2.9737 4.0674 44 1 2.1154 2.0650 1.8422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815251841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -169.337832 kcal Electronic energy + Delta-G solvation = -27048.617290 eV Core-core repulsion = 23057.105923 eV Total energy + Delta-G solvation = -3991.511367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86570 -40.69464 -38.75036 -37.57157 -37.33179 -35.32728 -34.93396 -32.93245 -31.63079 -29.85311 -29.01114 -27.08100 -25.81144 -24.83107 -24.48384 -23.29418 -22.73075 -21.47801 -19.31293 -18.74588 -18.69332 -18.35782 -18.03155 -17.73174 -17.25473 -16.96887 -16.49106 -16.26417 -15.95322 -15.91780 -15.56967 -15.16942 -14.73654 -14.55154 -14.38873 -14.21596 -13.89933 -13.70806 -13.38716 -13.28595 -13.18400 -13.04958 -12.90486 -12.87425 -12.69792 -12.52606 -12.42884 -12.08277 -12.02308 -11.96149 -11.70454 -11.65150 -11.32032 -11.26857 -10.88974 -10.60837 -10.26856 -9.52415 -9.31925 -8.31964 -6.44175 -0.01165 0.64263 1.00775 1.17743 1.40849 1.43520 1.52794 1.55634 1.73420 2.34858 2.68214 3.01979 3.06515 3.41793 3.58763 3.70389 3.80934 3.88488 3.94564 4.07855 4.11047 4.21580 4.27140 4.36766 4.42321 4.45640 4.50727 4.52633 4.66981 4.74754 4.79962 4.81801 4.85996 4.90486 4.96303 5.11192 5.17800 5.22286 5.33751 5.44379 5.45662 5.54661 5.95372 6.15051 6.49988 6.72076 6.80002 7.27402 8.80272 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.002282 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.138414 B =12266.984083 C =13675.095024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 H 0.135 0.865 4 C 0.464 3.536 5 O -0.524 6.524 6 O -0.357 6.357 7 C 0.078 3.922 8 C 0.054 3.946 9 O -0.408 6.408 10 C 0.208 3.792 11 C -0.549 4.549 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.983 3.017 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.264 1.264 19 C 0.177 3.823 20 H 0.069 0.931 21 O -0.379 6.379 22 C 0.060 3.940 23 C -0.079 4.079 24 C -0.185 4.185 25 S 0.125 5.875 26 C -0.213 4.213 27 C -0.136 4.136 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.056 0.944 36 H -0.008 1.008 37 H -0.010 1.010 38 H 0.271 0.729 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.187 0.813 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -10.429 27.995 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 H 0.152 0.848 4 C 0.308 3.692 5 O -0.413 6.413 6 O -0.273 6.273 7 C 0.005 3.995 8 C -0.022 4.022 9 O -0.328 6.328 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.805 3.195 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.188 1.188 19 C 0.117 3.883 20 H 0.087 0.913 21 O -0.298 6.298 22 C -0.018 4.018 23 C -0.118 4.118 24 C -0.302 4.302 25 S 0.392 5.608 26 C -0.349 4.349 27 C -0.165 4.165 28 C -0.162 4.162 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.204 0.796 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.197 -10.725 29.324 31.653 hybrid contribution 1.026 0.708 -1.955 2.319 sum -4.171 -10.017 27.369 29.441 Atomic orbital electron populations 1.21577 0.90127 1.03192 1.03612 1.21177 1.00220 1.00608 0.86820 0.84768 1.24005 0.76230 0.83620 0.85335 1.90633 1.39056 1.24135 1.87439 1.86587 1.72167 1.53027 1.15543 1.23159 0.99955 0.94696 0.81698 1.22632 0.97362 0.86436 0.95804 1.87857 1.70353 1.30274 1.44335 1.19873 0.94513 0.89945 0.82383 1.21380 1.29041 1.02234 1.06039 0.92123 1.25947 0.96337 1.02733 0.94154 1.70057 1.39699 1.37825 1.09296 0.85192 0.78310 0.77185 0.78789 1.19335 1.19852 1.18844 1.20549 0.96254 0.82207 0.89311 0.91346 1.88013 1.75603 1.27859 1.38284 1.22843 0.99068 0.96934 0.82950 1.21054 1.02742 0.87060 1.00943 1.25043 1.06800 1.00843 0.97527 1.84014 1.63198 0.96360 1.17251 1.25741 1.07615 1.03866 0.97629 1.20063 1.03374 0.93881 0.99203 1.20011 1.05391 0.94348 0.96496 0.90002 0.91950 0.91296 0.91090 0.87660 0.90101 0.92557 0.99067 0.99263 0.91997 0.86283 0.92553 0.88647 0.87434 0.79589 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.78 71.98 0.63 -2.09 16 2 C -0.07 -1.63 2.48 -11.54 -0.03 -1.66 16 3 H 0.13 2.76 7.08 -2.39 -0.02 2.75 16 4 C 0.46 14.22 7.12 71.24 0.51 14.73 16 5 O -0.52 -17.96 15.15 27.35 0.41 -17.55 16 6 O -0.36 -12.15 10.19 -48.77 -0.50 -12.64 16 7 C 0.08 2.53 5.84 71.98 0.42 2.95 16 8 C 0.05 2.01 6.33 71.98 0.46 2.47 16 9 O -0.41 -20.22 10.30 -145.57 -1.50 -21.72 16 10 C 0.21 11.69 5.69 71.24 0.41 12.09 16 11 C -0.55 -32.89 9.43 25.60 0.24 -32.65 16 12 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -55.70 13.29 21.44 0.28 -55.41 16 15 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 19 C 0.18 3.94 2.21 30.35 0.07 4.01 16 20 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16 21 O -0.38 -8.77 8.64 -133.95 -1.16 -9.93 16 22 C 0.06 0.94 6.83 72.13 0.49 1.43 16 23 C -0.08 -1.00 6.55 30.22 0.20 -0.80 16 24 C -0.18 -3.05 6.44 25.14 0.16 -2.89 16 25 S 0.13 1.72 23.32 -56.49 -1.32 0.41 16 26 C -0.21 -3.03 11.21 66.66 0.75 -2.28 16 27 C -0.14 -2.28 9.40 21.27 0.20 -2.08 16 28 C -0.15 -2.82 4.43 -19.97 -0.09 -2.91 16 29 H 0.08 1.53 7.34 -2.39 -0.02 1.52 16 30 H 0.06 1.41 7.55 -2.39 -0.02 1.39 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.11 2.80 8.13 -2.39 -0.02 2.78 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.15 2.23 7.28 -2.91 -0.02 2.21 16 Total: -1.00 -72.80 380.91 4.13 -68.68 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.00 Total: 10.68 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.87 Total: -8.81 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -2.74 Total: -61.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.41 kcal Total: -72.80 4.13 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.663 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds