Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.50706 * 109.47001 * 240.00559 * 2 1 3 5 5 O 1.20822 * 119.99873 * 240.00365 * 4 2 1 6 6 O 1.34226 * 120.00048 * 59.99992 * 4 2 1 7 7 C 1.45205 * 117.00013 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46876 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.47534 * 64.99885 * 8 7 6 10 10 C 1.42890 * 114.00159 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99701 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00662 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00049 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47122 * 119.99885 * 15 13 11 18 18 H 1.48500 * 109.47262 * 239.99765 * 15 13 11 19 19 C 1.53003 * 109.47127 * 120.00813 * 2 1 3 20 20 H 1.08999 * 109.68316 * 304.45536 * 19 2 1 21 21 O 1.43021 * 109.69393 * 64.99903 * 19 2 1 22 22 C 1.43032 * 114.24437 * 171.78492 * 21 19 2 23 23 C 1.53439 * 109.08044 * 288.73311 * 22 21 19 24 24 C 1.51404 * 107.94536 * 47.43258 * 23 22 21 25 25 S 1.75438 * 126.32622 * 164.47231 * 24 23 22 26 26 C 1.75808 * 91.05217 * 180.02562 * 25 24 23 27 27 C 1.33067 * 109.61577 * 0.02562 * 26 25 24 28 28 C 1.34952 * 123.62466 * 344.57605 * 24 23 22 29 29 H 1.09002 * 109.47430 * 59.99580 * 1 2 3 30 30 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.98959 * 1 2 3 32 32 H 1.09000 * 109.46837 * 299.99580 * 7 6 4 33 33 H 1.08999 * 109.46921 * 59.99727 * 7 6 4 34 34 H 1.09002 * 109.47143 * 184.99427 * 8 7 6 35 35 H 1.09002 * 109.47476 * 304.99220 * 8 7 6 36 36 H 1.09007 * 109.47204 * 299.99621 * 10 9 8 37 37 H 1.08998 * 109.47771 * 59.99785 * 10 9 8 38 38 H 0.96997 * 120.00662 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.53817 * 168.85940 * 22 21 19 40 40 H 1.08997 * 109.60385 * 48.65376 * 22 21 19 41 41 H 1.09002 * 109.77581 * 167.06134 * 23 22 21 42 42 H 1.08998 * 109.77386 * 287.80524 * 23 22 21 43 43 H 1.08003 * 125.19388 * 179.97438 * 26 25 24 44 44 H 1.07998 * 122.18546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7269 -1.6927 -1.1198 6 8 1.7080 -0.2516 -2.4496 7 6 2.2267 -0.9861 -3.5898 8 6 1.7547 -0.3194 -4.8834 9 8 2.3269 0.9864 -4.9828 10 6 1.9480 1.6988 -6.1620 11 6 2.6058 3.0546 -6.1629 12 1 3.2485 3.3435 -5.3445 13 6 2.3871 3.9262 -7.2086 14 7 1.6049 3.5744 -8.2055 15 14 3.2019 5.6073 -7.2093 16 1 4.0263 5.7582 -5.9835 17 1 4.0684 5.7368 -8.4082 18 1 2.1582 6.6633 -7.2365 19 6 2.0400 -0.7214 1.2492 20 1 1.6149 -0.2585 2.1397 21 8 1.6641 -2.1004 1.1966 22 6 2.2474 -2.9077 2.2231 23 6 3.7451 -3.0782 1.9368 24 6 4.3168 -1.7138 1.6145 25 16 6.0163 -1.2792 1.5866 26 6 5.6193 0.3750 1.1429 27 6 4.2988 0.5065 1.0448 28 6 3.5597 -0.6408 1.3036 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 3.3162 -0.9857 -3.5570 33 1 1.8625 -2.0129 -3.5567 34 1 2.0690 -0.9196 -5.7372 35 1 0.6676 -0.2401 -4.8757 36 1 2.2668 1.1402 -7.0422 37 1 0.8650 1.8200 -6.1813 38 1 1.4513 4.1875 -8.9413 39 1 1.7653 -3.8852 2.2363 40 1 2.1141 -2.4225 3.1900 41 1 4.2440 -3.4891 2.8146 42 1 3.8844 -3.7466 1.0871 43 1 6.3375 1.1642 0.9762 44 1 3.8321 1.4441 0.7812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -146.864299 kcal Electronic energy + Delta-G solvation = -27632.686882 eV Core-core repulsion = 23642.150040 eV Total energy + Delta-G solvation = -3990.536842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79053 -39.46366 -36.97489 -36.65880 -35.84599 -34.44546 -32.75798 -32.09959 -30.05008 -29.10553 -26.92837 -26.13010 -24.47579 -23.98500 -22.39284 -21.97621 -21.87429 -20.28285 -18.67407 -17.77038 -17.49381 -16.84108 -16.42650 -16.30529 -15.83861 -15.31682 -15.26351 -14.94306 -14.85118 -14.52920 -14.31455 -13.78645 -13.65816 -13.50868 -13.40101 -12.85617 -12.70046 -12.57558 -12.21134 -12.11514 -12.00886 -11.84861 -11.75587 -11.37415 -11.27711 -11.21567 -10.86893 -10.86244 -10.81409 -10.68859 -10.24511 -10.10773 -9.97498 -9.76508 -9.10388 -8.86389 -8.66201 -8.44847 -8.19874 -6.11567 -4.13067 0.87581 1.49063 1.85655 2.50708 2.53108 2.88831 3.28871 3.35263 3.41859 3.46739 4.33395 4.36578 4.41908 4.53506 4.73464 4.80736 4.82666 4.89014 4.96372 5.08351 5.11153 5.21197 5.25045 5.30400 5.33310 5.42898 5.50873 5.53257 5.59861 5.69422 5.75895 5.92809 5.96173 5.98910 6.07602 6.15395 6.18711 6.31586 6.78175 6.94216 7.07357 7.41253 7.79012 8.09079 8.13835 8.54518 9.00158 9.51739 11.00094 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.002648 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.820519 B =10571.541273 C =11448.876182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.121 0.879 4 C 0.463 3.537 5 O -0.489 6.489 6 O -0.344 6.344 7 C 0.077 3.923 8 C 0.062 3.938 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.173 3.827 20 H 0.085 0.915 21 O -0.357 6.357 22 C 0.071 3.929 23 C -0.078 4.078 24 C -0.159 4.159 25 S 0.098 5.902 26 C -0.213 4.213 27 C -0.123 4.123 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.263 0.737 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.166 0.834 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -12.474 24.365 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 H 0.138 0.862 4 C 0.304 3.696 5 O -0.375 6.375 6 O -0.260 6.260 7 C 0.003 3.997 8 C -0.015 4.015 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.112 3.888 20 H 0.103 0.897 21 O -0.275 6.275 22 C -0.008 4.008 23 C -0.118 4.118 24 C -0.276 4.276 25 S 0.364 5.636 26 C -0.348 4.348 27 C -0.153 4.153 28 C -0.149 4.149 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.183 0.817 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.887 -13.464 24.438 28.051 hybrid contribution -0.604 1.610 -0.701 1.857 sum 2.282 -11.854 23.737 26.630 Atomic orbital electron populations 1.21752 0.91130 1.03596 1.03608 1.21144 0.98946 1.00286 0.88865 0.86167 1.23208 0.78129 0.83252 0.84962 1.90653 1.34606 1.25143 1.87111 1.86573 1.69344 1.55525 1.14591 1.23121 0.99721 0.94127 0.82687 1.22317 0.97864 0.87790 0.93563 1.87916 1.71343 1.25475 1.46306 1.20233 0.95126 0.91224 0.81449 1.21087 1.28988 0.98510 1.06561 0.91485 1.24949 0.95435 0.99067 0.95078 1.69968 1.37377 1.36650 1.09820 0.86284 0.79130 0.82987 0.78121 1.19474 1.20846 1.20803 1.20807 0.88122 0.83469 0.96364 0.89745 1.88036 1.68851 1.18139 1.52506 1.22567 0.91775 0.95903 0.90528 1.20925 0.96422 0.92001 1.02435 1.24581 0.95637 0.99263 1.08147 1.83982 1.05644 1.05296 1.68684 1.25369 0.99450 0.99619 1.10342 1.19891 0.93188 0.99254 1.02940 1.20023 0.96978 0.93121 1.04791 0.90498 0.91292 0.91172 0.90854 0.90675 0.92151 0.93254 0.97668 0.97504 0.92693 0.88104 0.92828 0.89973 0.89128 0.81682 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.02 37.16 0.34 -1.06 16 2 C -0.07 -0.85 2.48 -91.77 -0.23 -1.08 16 3 H 0.12 1.24 7.11 -51.93 -0.37 0.87 16 4 C 0.46 7.20 6.84 36.01 0.25 7.45 16 5 O -0.49 -8.45 13.80 -25.62 -0.35 -8.80 16 6 O -0.34 -5.99 10.09 -42.01 -0.42 -6.42 16 7 C 0.08 1.30 5.85 37.16 0.22 1.52 16 8 C 0.06 1.18 6.33 37.16 0.24 1.42 16 9 O -0.39 -9.67 10.30 -38.79 -0.40 -10.07 16 10 C 0.19 5.37 5.69 36.00 0.20 5.57 16 11 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 12 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C 0.17 1.86 2.59 -27.10 -0.07 1.79 16 20 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 21 O -0.36 -4.15 8.49 -55.72 -0.47 -4.62 16 22 C 0.07 0.60 6.83 37.38 0.26 0.86 16 23 C -0.08 -0.73 6.55 -27.31 -0.18 -0.91 16 24 C -0.16 -1.84 6.39 -35.13 -0.22 -2.07 16 25 S 0.10 1.06 23.32 -107.50 -2.51 -1.45 16 26 C -0.21 -2.36 11.21 28.94 0.32 -2.04 16 27 C -0.12 -1.43 9.45 -41.13 -0.39 -1.81 16 28 C -0.14 -1.63 3.98 -104.75 -0.42 -2.05 16 29 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 33 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.01 0.16 8.14 -51.92 -0.42 -0.27 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.14 1.41 7.29 -52.49 -0.38 1.03 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -34.90 380.38 -9.44 -44.33 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.62 Total: -2.90 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.11 Total: -6.47 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.65 Total: -29.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.90 -9.44 -44.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.532 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds