Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.50706 * 109.47001 * 240.00559 * 2 1 3 5 5 O 1.20822 * 119.99873 * 240.00365 * 4 2 1 6 6 O 1.34226 * 120.00048 * 59.99992 * 4 2 1 7 7 C 1.45205 * 117.00013 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46876 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.47534 * 64.99885 * 8 7 6 10 10 C 1.42890 * 114.00159 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99701 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00662 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00049 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47122 * 119.99885 * 15 13 11 18 18 H 1.48500 * 109.47262 * 239.99765 * 15 13 11 19 19 C 1.53003 * 109.47127 * 120.00813 * 2 1 3 20 20 H 1.08999 * 109.68316 * 304.45536 * 19 2 1 21 21 O 1.43021 * 109.69393 * 64.99903 * 19 2 1 22 22 C 1.43032 * 114.24437 * 171.78492 * 21 19 2 23 23 C 1.53439 * 109.08044 * 288.73311 * 22 21 19 24 24 C 1.51404 * 107.94536 * 47.43258 * 23 22 21 25 25 S 1.75438 * 126.32622 * 164.47231 * 24 23 22 26 26 C 1.75808 * 91.05217 * 180.02562 * 25 24 23 27 27 C 1.33067 * 109.61577 * 0.02562 * 26 25 24 28 28 C 1.34952 * 123.62466 * 344.57605 * 24 23 22 29 29 H 1.09002 * 109.47430 * 59.99580 * 1 2 3 30 30 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.98959 * 1 2 3 32 32 H 1.09000 * 109.46837 * 299.99580 * 7 6 4 33 33 H 1.08999 * 109.46921 * 59.99727 * 7 6 4 34 34 H 1.09002 * 109.47143 * 184.99427 * 8 7 6 35 35 H 1.09002 * 109.47476 * 304.99220 * 8 7 6 36 36 H 1.09007 * 109.47204 * 299.99621 * 10 9 8 37 37 H 1.08998 * 109.47771 * 59.99785 * 10 9 8 38 38 H 0.96997 * 120.00662 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.53817 * 168.85940 * 22 21 19 40 40 H 1.08997 * 109.60385 * 48.65376 * 22 21 19 41 41 H 1.09002 * 109.77581 * 167.06134 * 23 22 21 42 42 H 1.08998 * 109.77386 * 287.80524 * 23 22 21 43 43 H 1.08003 * 125.19388 * 179.97438 * 26 25 24 44 44 H 1.07998 * 122.18546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7269 -1.6927 -1.1198 6 8 1.7080 -0.2516 -2.4496 7 6 2.2267 -0.9861 -3.5898 8 6 1.7547 -0.3194 -4.8834 9 8 2.3269 0.9864 -4.9828 10 6 1.9480 1.6988 -6.1620 11 6 2.6058 3.0546 -6.1629 12 1 3.2485 3.3435 -5.3445 13 6 2.3871 3.9262 -7.2086 14 7 1.6049 3.5744 -8.2055 15 14 3.2019 5.6073 -7.2093 16 1 4.0263 5.7582 -5.9835 17 1 4.0684 5.7368 -8.4082 18 1 2.1582 6.6633 -7.2365 19 6 2.0400 -0.7214 1.2492 20 1 1.6149 -0.2585 2.1397 21 8 1.6641 -2.1004 1.1966 22 6 2.2474 -2.9077 2.2231 23 6 3.7451 -3.0782 1.9368 24 6 4.3168 -1.7138 1.6145 25 16 6.0163 -1.2792 1.5866 26 6 5.6193 0.3750 1.1429 27 6 4.2988 0.5065 1.0448 28 6 3.5597 -0.6408 1.3036 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 3.3162 -0.9857 -3.5570 33 1 1.8625 -2.0129 -3.5567 34 1 2.0690 -0.9196 -5.7372 35 1 0.6676 -0.2401 -4.8757 36 1 2.2668 1.1402 -7.0422 37 1 0.8650 1.8200 -6.1813 38 1 1.4513 4.1875 -8.9413 39 1 1.7653 -3.8852 2.2363 40 1 2.1141 -2.4225 3.1900 41 1 4.2440 -3.4891 2.8146 42 1 3.8844 -3.7466 1.0871 43 1 6.3375 1.1642 0.9762 44 1 3.8321 1.4441 0.7812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815251843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -167.092729 kcal Electronic energy + Delta-G solvation = -27633.564052 eV Core-core repulsion = 23642.150040 eV Total energy + Delta-G solvation = -3991.414012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83495 -40.47734 -38.71810 -37.46429 -37.26775 -35.33646 -34.94326 -32.89256 -31.62278 -29.92932 -29.02889 -26.90716 -25.46224 -24.92095 -24.51749 -23.28848 -22.75199 -21.38733 -19.53086 -18.80531 -18.68658 -18.30550 -17.98104 -17.70679 -16.97677 -16.86738 -16.46594 -16.22813 -15.92643 -15.83358 -15.60516 -15.14123 -14.68084 -14.46102 -14.30087 -14.24672 -13.92161 -13.73284 -13.37742 -13.27201 -13.05133 -12.93228 -12.89700 -12.79068 -12.72518 -12.59667 -12.43459 -12.08563 -12.02933 -11.93914 -11.65261 -11.56741 -11.27799 -11.19420 -10.90349 -10.54190 -10.28441 -9.49947 -9.28853 -8.33059 -6.45339 0.03150 0.67444 1.02095 1.33661 1.40050 1.41411 1.56123 1.65370 1.72851 2.34080 2.74051 3.00830 3.05272 3.54067 3.62485 3.72660 3.79386 3.93848 4.08398 4.11189 4.12458 4.27082 4.31079 4.34155 4.40761 4.42852 4.49680 4.55400 4.66907 4.73054 4.83583 4.84263 4.89297 4.93952 5.00709 5.14265 5.16311 5.30604 5.36263 5.49852 5.53317 5.55258 5.94184 6.22169 6.48853 6.78171 6.86942 7.26359 8.79485 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.002648 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.820519 B =10571.541273 C =11448.876182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 H 0.132 0.868 4 C 0.458 3.542 5 O -0.510 6.510 6 O -0.362 6.362 7 C 0.083 3.917 8 C 0.056 3.944 9 O -0.408 6.408 10 C 0.208 3.792 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.174 3.826 20 H 0.114 0.886 21 O -0.379 6.379 22 C 0.067 3.933 23 C -0.079 4.079 24 C -0.175 4.175 25 S 0.097 5.903 26 C -0.224 4.224 27 C -0.138 4.138 28 C -0.150 4.150 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.057 0.943 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.180 0.820 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -11.812 25.777 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 H 0.150 0.850 4 C 0.301 3.699 5 O -0.397 6.397 6 O -0.279 6.279 7 C 0.009 3.991 8 C -0.021 4.021 9 O -0.329 6.329 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.078 0.922 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.806 3.194 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.195 1.195 19 C 0.114 3.886 20 H 0.132 0.868 21 O -0.298 6.298 22 C -0.011 4.011 23 C -0.118 4.118 24 C -0.292 4.292 25 S 0.363 5.637 26 C -0.359 4.359 27 C -0.168 4.168 28 C -0.163 4.163 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.198 0.802 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.736 -12.828 25.864 29.000 hybrid contribution -0.564 1.296 -1.127 1.807 sum 2.172 -11.533 24.737 27.380 Atomic orbital electron populations 1.21737 0.89637 1.03505 1.04563 1.21345 1.00092 1.00489 0.87195 0.85017 1.24063 0.77525 0.83181 0.85127 1.90637 1.35586 1.26226 1.87231 1.86580 1.69702 1.56141 1.15451 1.23031 0.99103 0.95025 0.81949 1.22616 0.98277 0.85597 0.95618 1.87863 1.72022 1.28036 1.44938 1.19877 0.93766 0.91068 0.81994 1.21399 1.30057 1.00002 1.07197 0.92205 1.25948 0.95635 1.03361 0.94181 1.70063 1.38020 1.38417 1.10372 0.85140 0.78352 0.77390 0.78550 1.18917 1.19646 1.19457 1.20938 0.87463 0.83518 0.96698 0.86826 1.88002 1.69218 1.18671 1.53884 1.22790 0.91006 0.96617 0.90670 1.21011 0.97410 0.90682 1.02716 1.24965 0.95828 1.00237 1.08200 1.83913 1.05814 1.05355 1.68637 1.25671 0.99854 1.00138 1.10203 1.20134 0.93534 0.99849 1.03251 1.20282 0.97870 0.93258 1.04876 0.91651 0.91872 0.88081 0.91884 0.88028 0.90365 0.92481 0.99170 0.99203 0.91965 0.86364 0.90862 0.87699 0.90750 0.80240 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.02 71.98 0.65 -1.79 16 2 C -0.07 -1.58 2.48 -11.54 -0.03 -1.61 16 3 H 0.13 2.54 7.11 -2.39 -0.02 2.52 16 4 C 0.46 14.07 6.84 71.24 0.49 14.56 16 5 O -0.51 -17.53 13.80 28.55 0.39 -17.14 16 6 O -0.36 -12.59 10.09 -48.73 -0.49 -13.08 16 7 C 0.08 2.78 5.85 71.98 0.42 3.20 16 8 C 0.06 2.12 6.33 71.98 0.46 2.58 16 9 O -0.41 -20.62 10.30 -145.57 -1.50 -22.12 16 10 C 0.21 11.81 5.69 71.24 0.41 12.22 16 11 C -0.55 -33.12 9.43 25.60 0.24 -32.88 16 12 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.42 5.46 84.65 0.46 0.89 16 14 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 15 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 C 0.17 3.42 2.59 30.36 0.08 3.50 16 20 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 21 O -0.38 -8.20 8.49 -129.39 -1.10 -9.30 16 22 C 0.07 1.01 6.83 72.13 0.49 1.50 16 23 C -0.08 -1.39 6.55 30.22 0.20 -1.19 16 24 C -0.17 -3.91 6.39 25.15 0.16 -3.75 16 25 S 0.10 2.06 23.32 -56.49 -1.32 0.74 16 26 C -0.22 -4.85 11.21 66.66 0.75 -4.10 16 27 C -0.14 -3.10 9.45 21.27 0.20 -2.89 16 28 C -0.15 -3.42 3.98 -19.95 -0.08 -3.50 16 29 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 30 H 0.06 1.20 7.83 -2.38 -0.02 1.18 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 33 H 0.10 2.86 8.13 -2.39 -0.02 2.85 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.15 2.89 7.29 -2.91 -0.02 2.87 16 Total: -1.00 -75.30 380.38 4.19 -71.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.99 Total: 12.13 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.89 Total: -13.27 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.57 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.69 Total: -61.64 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -75.30 4.19 -71.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.983 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds