Wall clock time and date at job start Sat Apr 11 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35983 * 116.99755 * 2 1 4 4 C 1.38717 * 120.00170 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.99923 * 180.30367 * 4 3 2 6 6 C 1.38715 * 120.00053 * 359.44853 * 5 4 3 7 7 O 1.35978 * 120.00394 * 180.25154 * 6 5 4 8 8 C 1.42905 * 116.99843 * 0.30474 * 7 6 5 9 9 C 1.52997 * 109.47501 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.46931 * 64.99403 * 9 8 7 11 11 C 1.36939 * 120.00311 * 270.00255 * 10 9 8 12 12 H 1.07992 * 120.00003 * 15.68604 * 11 10 9 13 13 C 1.38817 * 119.99797 * 195.68243 * 11 10 9 14 14 N 1.31622 * 120.00228 * 22.54748 * 13 11 10 15 15 Si 1.86797 * 119.99830 * 202.54210 * 13 11 10 16 16 H 1.48495 * 109.47186 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47171 * 120.00458 * 15 13 11 18 18 H 1.48506 * 109.47154 * 240.00377 * 15 13 11 19 19 C 1.46503 * 119.99690 * 90.00373 * 10 9 8 20 20 C 1.50705 * 109.47071 * 84.04724 * 19 10 9 21 21 O 1.20827 * 120.00074 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99888 * 179.97438 * 20 19 10 23 23 C 1.38680 * 119.99855 * 0.55417 * 6 5 4 24 24 N 1.48008 * 120.00282 * 179.74186 * 23 6 5 25 25 O 1.21797 * 120.00149 * 179.97438 * 24 23 6 26 26 O 1.21802 * 119.99635 * 359.97438 * 24 23 6 27 27 C 1.38152 * 119.99710 * 359.72430 * 23 6 5 28 28 H 1.09000 * 109.46539 * 60.00346 * 1 2 3 29 29 H 1.08994 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47342 * 300.00709 * 1 2 3 31 31 H 1.07993 * 120.00249 * 0.03602 * 4 3 2 32 32 H 1.08006 * 119.99828 * 179.70992 * 5 4 3 33 33 H 1.08994 * 109.47014 * 299.99627 * 8 7 6 34 34 H 1.09003 * 109.47393 * 59.99381 * 8 7 6 35 35 H 1.08997 * 109.47470 * 185.00140 * 9 8 7 36 36 H 1.09005 * 109.46964 * 305.00078 * 9 8 7 37 37 H 0.96998 * 120.00094 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47303 * 204.04275 * 19 10 9 39 39 H 1.08997 * 109.47359 * 324.05044 * 19 10 9 40 40 H 0.96706 * 116.99960 * 180.02562 * 22 20 19 41 41 H 1.08000 * 119.99734 * 179.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6783 -0.0011 7 8 3.9204 4.8898 -0.0022 8 6 3.0805 6.0460 -0.0026 9 6 3.9476 7.3065 -0.0032 10 7 4.7053 7.3773 -1.2550 11 6 5.9449 6.8015 -1.3387 12 1 6.2608 6.0889 -0.5913 13 6 6.7953 7.1338 -2.3843 14 7 6.6378 8.2731 -3.0242 15 14 8.1635 5.9639 -2.8831 16 1 8.1273 4.7605 -2.0139 17 1 7.9754 5.5572 -4.2989 18 1 9.4753 6.6438 -2.7335 19 6 4.1367 8.0643 -2.4173 20 6 4.4120 9.5423 -2.3116 21 8 5.0202 9.9771 -1.3625 22 8 3.9815 10.3755 -3.2719 23 6 4.0584 2.5152 -0.0007 24 7 5.5365 2.5927 -0.0003 25 8 6.1998 1.5712 0.0006 26 8 6.0894 3.6779 -0.0009 27 6 3.4312 1.2843 -0.0001 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2124 2.3185 -0.0004 32 1 1.3296 4.5114 -0.0120 33 1 2.4509 6.0373 -0.8923 34 1 2.4515 6.0385 0.8876 35 1 3.3102 8.1861 0.0861 36 1 4.6393 7.2720 0.8386 37 1 7.2323 8.5055 -3.7545 38 1 4.5913 7.6744 -3.3282 39 1 3.0602 7.8966 -2.4479 40 1 4.1823 11.3149 -3.1605 41 1 4.0194 0.3786 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832444776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:46 Heat of formation + Delta-G solvation = -99.345429 kcal Electronic energy + Delta-G solvation = -30510.033367 eV Core-core repulsion = 25975.263884 eV Total energy + Delta-G solvation = -4534.769483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77417 -40.52087 -39.25893 -38.69767 -36.87452 -35.95441 -35.57259 -34.40223 -32.13904 -31.70891 -30.20227 -28.96044 -27.49642 -26.97074 -26.07157 -24.29895 -22.72647 -22.02660 -21.29743 -19.87516 -19.51014 -18.23137 -17.93123 -17.19867 -17.09483 -16.86238 -16.70781 -16.58957 -16.12999 -15.70146 -15.16678 -14.99560 -14.87421 -14.40598 -14.06531 -13.87517 -13.47836 -13.22576 -13.05929 -12.89174 -12.68619 -12.08793 -11.87149 -11.61720 -11.48274 -11.15770 -11.01158 -10.96364 -10.75863 -10.59366 -10.56193 -10.49143 -10.39379 -10.09293 -9.86620 -9.81651 -9.72813 -9.21283 -8.46792 -8.13448 -7.03896 -5.80428 -3.11800 0.01832 0.96022 1.58748 1.71293 2.85871 3.15372 3.19962 3.51567 3.60774 3.75523 3.85460 4.21832 4.32959 4.34667 4.48900 4.63853 4.66737 4.73121 4.85373 5.03765 5.10604 5.12998 5.28258 5.30426 5.47418 5.59305 5.63180 5.71068 5.77964 5.85539 6.14896 6.26621 6.59661 6.78071 6.86397 6.90355 7.02397 7.33558 7.81752 7.99040 8.20616 8.24912 9.16747 9.41774 9.80204 10.19753 11.31560 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.003850 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.704044 B = 7271.107799 C = 8756.880881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.077 3.923 4 C -0.114 4.114 5 C -0.180 4.180 6 C 0.178 3.822 7 O -0.246 6.246 8 C 0.032 3.968 9 C 0.146 3.854 10 N -0.560 5.560 11 C -0.237 4.237 12 H 0.101 0.899 13 C -0.003 4.003 14 N -0.914 5.914 15 Si 0.896 3.104 16 H -0.261 1.261 17 H -0.293 1.293 18 H -0.294 1.294 19 C 0.187 3.813 20 C 0.477 3.523 21 O -0.516 6.516 22 O -0.545 6.545 23 C -0.051 4.051 24 N 0.029 4.971 25 O -0.202 6.202 26 O -0.089 6.089 27 C -0.055 4.055 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.254 0.746 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 -10.845 5.162 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.032 3.968 4 C -0.133 4.133 5 C -0.199 4.199 6 C 0.127 3.873 7 O -0.155 6.155 8 C -0.046 4.046 9 C 0.018 3.982 10 N -0.279 5.279 11 C -0.366 4.366 12 H 0.118 0.882 13 C -0.199 4.199 14 N -0.560 5.560 15 Si 0.726 3.274 16 H -0.185 1.185 17 H -0.220 1.220 18 H -0.221 1.221 19 C 0.057 3.943 20 C 0.316 3.684 21 O -0.402 6.402 22 O -0.355 6.355 23 C -0.136 4.136 24 N 0.549 4.451 25 O -0.404 6.404 26 O -0.319 6.319 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.236 0.764 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.971 -11.401 5.278 21.927 hybrid contribution 0.841 0.500 -0.410 1.060 sum -17.130 -10.902 4.869 20.880 Atomic orbital electron populations 1.23110 0.78002 1.04355 1.01405 1.86101 1.21482 1.25539 1.89470 1.18330 0.90927 0.84944 1.02618 1.21423 1.00870 0.91423 0.99619 1.21140 0.92123 0.99402 1.07273 1.18835 0.90762 0.86606 0.91107 1.86724 1.34338 1.10275 1.84196 1.24221 0.94863 0.85726 0.99799 1.20845 0.95002 0.91036 0.91324 1.44098 1.17742 1.59829 1.06215 1.19680 0.90788 1.16217 1.09865 0.88159 1.24807 0.98331 0.96262 1.00518 1.69875 1.40767 1.19891 1.25477 0.86237 0.81139 0.81807 0.78218 1.18456 1.22036 1.22089 1.20325 0.95077 0.84299 0.94603 1.25345 0.74283 0.90576 0.78172 1.90515 1.37426 1.77730 1.34512 1.84635 1.75943 1.22110 1.52808 1.20128 0.80689 0.93329 1.19413 1.43260 1.02435 1.00932 0.98490 1.94483 1.63870 1.25812 1.56245 1.94757 1.72511 1.15057 1.49614 1.19845 0.92402 0.96801 0.98450 0.92458 0.87886 0.92532 0.83806 0.82910 0.92082 0.92624 0.91565 0.91274 0.93626 0.86610 0.93520 0.76401 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.98 10.50 -19.69 -0.21 -3.19 16 3 C 0.08 0.84 6.69 -39.24 -0.26 0.58 16 4 C -0.11 -1.04 9.03 -39.45 -0.36 -1.40 16 5 C -0.18 -1.95 9.03 -39.45 -0.36 -2.31 16 6 C 0.18 2.68 6.67 -39.24 -0.26 2.42 16 7 O -0.25 -4.33 7.53 -41.83 -0.32 -4.65 16 8 C 0.03 0.46 5.08 37.16 0.19 0.65 16 9 C 0.15 2.70 6.07 -4.05 -0.02 2.68 16 10 N -0.56 -13.02 2.01 -174.61 -0.35 -13.37 16 11 C -0.24 -6.33 9.17 -15.06 -0.14 -6.47 16 12 H 0.10 2.74 6.85 -52.49 -0.36 2.38 16 13 C 0.00 -0.08 4.86 -17.43 -0.08 -0.16 16 14 N -0.91 -26.24 9.33 55.49 0.52 -25.73 16 15 Si 0.90 22.85 29.61 -169.99 -5.03 17.81 16 16 H -0.26 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 19 C 0.19 4.15 5.49 -5.19 -0.03 4.13 16 20 C 0.48 11.11 6.56 36.01 0.24 11.35 16 21 O -0.52 -13.81 16.92 -18.75 -0.32 -14.12 16 22 O -0.54 -10.77 13.42 -39.25 -0.53 -11.30 16 23 C -0.05 -0.82 6.86 -79.82 -0.55 -1.37 16 24 N 0.03 0.57 4.45 34.02 0.15 0.72 16 25 O -0.20 -3.94 18.45 -29.46 -0.54 -4.49 16 26 O -0.09 -2.00 16.27 -36.50 -0.59 -2.59 16 27 C -0.06 -0.73 9.49 -39.45 -0.37 -1.11 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.14 0.80 6.29 -52.49 -0.33 0.47 16 32 H 0.15 1.29 6.29 -52.48 -0.33 0.96 16 33 H 0.06 0.82 7.65 -51.93 -0.40 0.42 16 34 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 35 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.07 1.36 8.04 -51.93 -0.42 0.95 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.12 2.87 6.33 -51.93 -0.33 2.55 16 39 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.38 5.99 9.10 45.56 0.41 6.40 16 41 H 0.16 1.99 7.61 -52.49 -0.40 1.59 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -35.88 358.42 -6.57 -42.45 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.74 Total: 2.94 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.02 Total: 10.11 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.32 Total: -38.38 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.50 Total: -40.34 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.88 -6.57 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832444776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.893 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds