Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35983 * 116.99755 * 2 1 4 4 C 1.38717 * 120.00170 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.99923 * 180.30367 * 4 3 2 6 6 C 1.38715 * 120.00053 * 359.44853 * 5 4 3 7 7 O 1.35978 * 120.00394 * 180.25154 * 6 5 4 8 8 C 1.42905 * 116.99843 * 0.30474 * 7 6 5 9 9 C 1.52997 * 109.47501 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.46931 * 64.99403 * 9 8 7 11 11 C 1.36939 * 120.00311 * 270.00255 * 10 9 8 12 12 H 1.07992 * 120.00003 * 15.68604 * 11 10 9 13 13 C 1.38817 * 119.99797 * 195.68243 * 11 10 9 14 14 N 1.31622 * 120.00228 * 22.54748 * 13 11 10 15 15 Si 1.86797 * 119.99830 * 202.54210 * 13 11 10 16 16 H 1.48495 * 109.47186 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47171 * 120.00458 * 15 13 11 18 18 H 1.48506 * 109.47154 * 240.00377 * 15 13 11 19 19 C 1.46503 * 119.99690 * 90.00373 * 10 9 8 20 20 C 1.50705 * 109.47071 * 84.04724 * 19 10 9 21 21 O 1.20827 * 120.00074 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99888 * 179.97438 * 20 19 10 23 23 C 1.38680 * 119.99855 * 0.55417 * 6 5 4 24 24 N 1.48008 * 120.00282 * 179.74186 * 23 6 5 25 25 O 1.21797 * 120.00149 * 179.97438 * 24 23 6 26 26 O 1.21802 * 119.99635 * 359.97438 * 24 23 6 27 27 C 1.38152 * 119.99710 * 359.72430 * 23 6 5 28 28 H 1.09000 * 109.46539 * 60.00346 * 1 2 3 29 29 H 1.08994 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47342 * 300.00709 * 1 2 3 31 31 H 1.07993 * 120.00249 * 0.03602 * 4 3 2 32 32 H 1.08006 * 119.99828 * 179.70992 * 5 4 3 33 33 H 1.08994 * 109.47014 * 299.99627 * 8 7 6 34 34 H 1.09003 * 109.47393 * 59.99381 * 8 7 6 35 35 H 1.08997 * 109.47470 * 185.00140 * 9 8 7 36 36 H 1.09005 * 109.46964 * 305.00078 * 9 8 7 37 37 H 0.96998 * 120.00094 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47303 * 204.04275 * 19 10 9 39 39 H 1.08997 * 109.47359 * 324.05044 * 19 10 9 40 40 H 0.96706 * 116.99960 * 180.02562 * 22 20 19 41 41 H 1.08000 * 119.99734 * 179.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6783 -0.0011 7 8 3.9204 4.8898 -0.0022 8 6 3.0805 6.0460 -0.0026 9 6 3.9476 7.3065 -0.0032 10 7 4.7053 7.3773 -1.2550 11 6 5.9449 6.8015 -1.3387 12 1 6.2608 6.0889 -0.5913 13 6 6.7953 7.1338 -2.3843 14 7 6.6378 8.2731 -3.0242 15 14 8.1635 5.9639 -2.8831 16 1 8.1273 4.7605 -2.0139 17 1 7.9754 5.5572 -4.2989 18 1 9.4753 6.6438 -2.7335 19 6 4.1367 8.0643 -2.4173 20 6 4.4120 9.5423 -2.3116 21 8 5.0202 9.9771 -1.3625 22 8 3.9815 10.3755 -3.2719 23 6 4.0584 2.5152 -0.0007 24 7 5.5365 2.5927 -0.0003 25 8 6.1998 1.5712 0.0006 26 8 6.0894 3.6779 -0.0009 27 6 3.4312 1.2843 -0.0001 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2124 2.3185 -0.0004 32 1 1.3296 4.5114 -0.0120 33 1 2.4509 6.0373 -0.8923 34 1 2.4515 6.0385 0.8876 35 1 3.3102 8.1861 0.0861 36 1 4.6393 7.2720 0.8386 37 1 7.2323 8.5055 -3.7545 38 1 4.5913 7.6744 -3.3282 39 1 3.0602 7.8966 -2.4479 40 1 4.1823 11.3149 -3.1605 41 1 4.0194 0.3786 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832444776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = -123.885979 kcal Electronic energy + Delta-G solvation = -30511.097525 eV Core-core repulsion = 25975.263884 eV Total energy + Delta-G solvation = -4535.833641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10371 -41.51903 -40.55899 -40.15138 -37.98330 -37.45489 -37.11883 -36.19798 -33.60530 -33.04578 -31.34178 -30.30093 -28.79864 -28.10412 -27.23714 -25.81912 -24.13463 -23.05458 -22.75507 -21.56555 -20.60585 -19.60033 -18.99626 -18.71032 -18.49863 -18.43394 -18.08513 -17.56637 -17.25517 -16.82923 -16.76569 -16.43431 -15.98538 -15.87733 -15.35771 -15.25783 -15.10491 -14.58840 -14.04618 -13.83637 -13.64134 -13.44011 -13.29063 -12.97705 -12.85399 -12.57588 -12.54348 -12.48414 -12.27879 -12.19711 -12.10868 -12.01428 -11.89580 -11.83532 -11.73007 -11.35958 -11.08081 -10.72888 -10.48795 -9.07020 -8.92933 -7.90323 -5.17817 -1.17967 0.02597 0.33116 0.50023 1.42206 1.48765 1.67903 1.99732 2.04357 2.23879 2.28589 2.53925 2.82791 3.30977 3.38383 3.50310 3.58381 3.65736 3.88380 4.10288 4.21525 4.35765 4.37939 4.44276 4.46227 4.46403 4.64929 4.72956 4.77355 4.83387 4.90672 5.00455 5.07711 5.23355 5.30543 5.37122 5.90053 6.16205 6.18431 6.26365 6.37587 6.62793 7.15436 7.65238 7.87744 8.20030 9.19676 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.003850 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.704044 B = 7271.107799 C = 8756.880881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.087 4.087 5 C -0.166 4.166 6 C 0.160 3.840 7 O -0.286 6.286 8 C 0.037 3.963 9 C 0.142 3.858 10 N -0.576 5.576 11 C -0.217 4.217 12 H 0.085 0.915 13 C -0.049 4.049 14 N -0.934 5.934 15 Si 0.938 3.062 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.302 1.302 19 C 0.186 3.814 20 C 0.481 3.519 21 O -0.558 6.558 22 O -0.534 6.534 23 C -0.076 4.076 24 N 0.035 4.965 25 O -0.200 6.200 26 O -0.170 6.170 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.401 0.599 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.880 -11.824 5.459 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.045 3.955 4 C -0.106 4.106 5 C -0.184 4.184 6 C 0.109 3.891 7 O -0.196 6.196 8 C -0.039 4.039 9 C 0.016 3.984 10 N -0.295 5.295 11 C -0.348 4.348 12 H 0.103 0.897 13 C -0.243 4.243 14 N -0.583 5.583 15 Si 0.769 3.231 16 H -0.198 1.198 17 H -0.219 1.219 18 H -0.230 1.230 19 C 0.056 3.944 20 C 0.323 3.677 21 O -0.447 6.447 22 O -0.346 6.346 23 C -0.161 4.161 24 N 0.545 4.455 25 O -0.408 6.408 26 O -0.383 6.383 27 C -0.093 4.093 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.211 0.789 32 H 0.206 0.794 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.259 0.741 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.083 -12.275 5.580 26.732 hybrid contribution 2.107 0.586 -0.424 2.227 sum -20.976 -11.689 5.156 24.560 Atomic orbital electron populations 1.23532 0.75304 1.06287 1.03103 1.86120 1.24195 1.24831 1.88942 1.18387 0.90027 0.86356 1.00728 1.21951 1.03062 0.89702 0.95852 1.21542 0.89976 1.01576 1.05351 1.19134 0.92409 0.85183 0.92344 1.86661 1.36321 1.11697 1.84942 1.24047 0.93744 0.83162 1.02964 1.21047 0.94834 0.94161 0.88374 1.44196 1.16960 1.60048 1.08344 1.19677 0.91854 1.14851 1.08385 0.89746 1.25162 1.00079 0.97313 1.01725 1.69979 1.41459 1.20760 1.26131 0.85596 0.79678 0.80255 0.77591 1.19836 1.21916 1.22974 1.20369 0.97432 0.83444 0.93120 1.25492 0.73227 0.91299 0.77731 1.90500 1.39337 1.78592 1.36273 1.84558 1.75180 1.23520 1.51335 1.20339 0.77732 0.95299 1.22747 1.43798 1.04372 1.00144 0.97219 1.94413 1.65568 1.25672 1.55173 1.94753 1.74152 1.15612 1.53754 1.19896 0.93965 0.95581 0.99873 0.90784 0.86232 0.90557 0.78906 0.79422 0.89977 0.88067 0.89480 0.93693 0.94600 0.89338 0.88577 0.74127 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.97 10.50 -93.36 -0.98 -5.95 16 3 C 0.09 1.65 6.69 22.49 0.15 1.80 16 4 C -0.09 -1.08 9.03 22.36 0.20 -0.88 16 5 C -0.17 -2.77 9.03 22.36 0.20 -2.57 16 6 C 0.16 4.56 6.67 22.49 0.15 4.71 16 7 O -0.29 -9.90 7.53 -72.12 -0.54 -10.45 16 8 C 0.04 0.97 5.08 71.98 0.37 1.34 16 9 C 0.14 5.08 6.07 86.38 0.52 5.61 16 10 N -0.58 -26.72 2.01 -706.34 -1.42 -28.14 16 11 C -0.22 -12.01 9.17 84.03 0.77 -11.24 16 12 H 0.08 4.90 6.85 -2.91 -0.02 4.88 16 13 C -0.05 -2.85 4.86 84.86 0.41 -2.43 16 14 N -0.93 -55.08 9.33 21.65 0.20 -54.87 16 15 Si 0.94 49.44 29.61 68.60 2.03 51.47 16 16 H -0.27 -14.83 7.11 99.48 0.71 -14.12 16 17 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 18 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 19 C 0.19 8.06 5.49 85.63 0.47 8.53 16 20 C 0.48 21.99 6.56 71.24 0.47 22.45 16 21 O -0.56 -29.84 16.92 21.96 0.37 -29.47 16 22 O -0.53 -20.22 13.42 -51.41 -0.69 -20.91 16 23 C -0.08 -2.45 6.86 36.46 0.25 -2.20 16 24 N 0.03 1.45 4.45 -46.27 -0.21 1.25 16 25 O -0.20 -8.27 18.45 18.89 0.35 -7.92 16 26 O -0.17 -8.23 16.27 25.62 0.42 -7.81 16 27 C -0.07 -1.87 9.49 22.35 0.21 -1.66 16 28 H 0.07 0.16 7.66 -2.39 -0.02 0.14 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 0.12 7.66 -2.38 -0.02 0.10 16 31 H 0.19 0.56 6.29 -2.91 -0.02 0.54 16 32 H 0.19 1.83 6.29 -2.91 -0.02 1.81 16 33 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 34 H 0.10 1.73 7.67 -2.39 -0.02 1.71 16 35 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 36 H 0.04 1.80 8.04 -2.38 -0.02 1.78 16 37 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.09 4.40 6.33 -2.38 -0.02 4.38 16 39 H 0.10 3.17 8.12 -2.39 -0.02 3.15 16 40 H 0.40 11.88 9.10 -74.05 -0.67 11.20 16 41 H 0.16 3.95 7.61 -2.91 -0.02 3.93 16 Total: -1.00 -85.42 358.42 5.25 -80.17 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.43 Total: 8.02 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 5.29 Total: 24.62 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.42 Total: -81.77 kcal Atomic # 8 Polarization: -81.44 SS G_CDS: -1.08 Total: -82.51 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.03 Total: 51.47 kcal Total: -85.42 5.25 -80.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832444776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.713 kcal (2) G-P(sol) polarization free energy of solvation -85.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds