Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00103 * 2 1 4 4 C 1.46894 * 110.99771 * 123.95637 * 2 1 3 5 5 C 1.53004 * 108.71403 * 55.80544 * 4 2 1 6 6 N 1.46502 * 109.46600 * 55.29178 * 5 4 2 7 7 C 1.34777 * 119.99743 * 184.54708 * 6 5 4 8 8 O 1.21761 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.46242 * 119.99963 * 180.02562 * 7 6 5 10 10 S 1.75660 * 125.22800 * 0.02562 * 9 7 6 11 11 C 1.75477 * 92.09496 * 179.97438 * 10 9 7 12 12 C 1.32767 * 111.35721 * 359.97438 * 11 10 9 13 13 C 1.39547 * 125.22658 * 179.71746 * 9 7 6 14 14 C 1.40535 * 123.71769 * 0.02562 * 13 9 7 15 15 H 1.08003 * 119.99691 * 24.08794 * 14 13 9 16 16 C 1.40303 * 120.00464 * 204.08581 * 14 13 9 17 17 N 1.30646 * 119.99707 * 10.08481 * 16 14 13 18 18 Si 1.86801 * 120.00462 * 190.08750 * 16 14 13 19 19 H 1.48504 * 109.47061 * 89.99726 * 18 16 14 20 20 H 1.48496 * 109.47199 * 209.99801 * 18 16 14 21 21 H 1.48499 * 109.46882 * 330.00217 * 18 16 14 22 22 C 1.52820 * 109.05392 * 297.12610 * 4 2 1 23 23 C 1.54255 * 112.66596 * 239.21132 * 22 4 2 24 24 S 1.83961 * 102.58036 * 335.48043 * 23 22 4 25 25 C 1.54262 * 108.87077 * 174.26897 * 4 2 1 26 26 H 1.08994 * 109.47149 * 299.15718 * 1 2 3 27 27 H 1.09002 * 109.46830 * 59.16135 * 1 2 3 28 28 H 1.09003 * 109.47115 * 179.15655 * 1 2 3 29 29 H 1.08996 * 109.47356 * 191.91046 * 3 2 1 30 30 H 1.09005 * 109.46890 * 311.91273 * 3 2 1 31 31 H 1.09004 * 109.46750 * 71.90844 * 3 2 1 32 32 H 1.08996 * 109.47454 * 175.29045 * 5 4 2 33 33 H 1.08996 * 109.47405 * 295.29465 * 5 4 2 34 34 H 0.96998 * 120.00621 * 4.54669 * 6 5 4 35 35 H 1.07987 * 124.32190 * 180.02562 * 11 10 9 36 36 H 1.08003 * 122.78126 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99710 * 179.97438 * 17 16 14 38 38 H 1.08999 * 108.82075 * 118.37234 * 22 4 2 39 39 H 1.09006 * 108.71994 * 359.97438 * 22 4 2 40 40 H 1.09000 * 110.78647 * 217.21094 * 23 22 4 41 41 H 1.08997 * 110.95652 * 93.83043 * 23 22 4 42 42 H 1.09005 * 110.78349 * 27.07271 * 25 4 2 43 43 H 1.08996 * 110.78909 * 263.81347 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.4110 -2.1792 1.0902 6 7 1.7020 -2.7846 -0.2118 7 6 1.2035 -3.9990 -0.5168 8 8 0.5116 -4.5933 0.2899 9 6 1.4944 -4.6036 -1.8162 10 16 2.4742 -3.8722 -3.0774 11 6 2.2470 -5.2489 -4.1416 12 6 1.4888 -6.1791 -3.5736 13 6 1.0413 -5.8528 -2.2423 14 6 0.2349 -6.6982 -1.4613 15 1 -0.3813 -6.2836 -0.6771 16 6 0.2302 -8.0807 -1.7003 17 7 1.1126 -8.6072 -2.5071 18 14 -1.0379 -9.1687 -0.8650 19 1 -2.2467 -9.2676 -1.7219 20 1 -0.4671 -10.5236 -0.6561 21 1 -1.4081 -8.5798 0.4470 22 6 1.5593 -0.0916 2.4377 23 6 2.7537 0.3379 3.3142 24 16 4.0862 -0.8046 2.7635 25 6 3.5302 -0.8564 1.0108 26 1 -0.3633 0.5007 0.8974 27 1 -0.3633 0.5268 -0.8824 28 1 -0.3633 -1.0276 -0.0151 29 1 3.0644 1.3503 -0.2121 30 1 1.4848 1.9566 -0.7648 31 1 1.8278 1.8249 0.9769 32 1 1.8573 -2.7837 1.8798 33 1 0.3318 -2.1312 1.2355 34 1 2.2535 -2.3114 -0.8543 35 1 2.6705 -5.3296 -5.1316 36 1 1.2318 -7.1051 -4.0664 37 1 1.1096 -9.5630 -2.6720 38 1 0.9389 -0.7867 3.0034 39 1 0.9667 0.7899 2.1929 40 1 2.5306 0.1911 4.3710 41 1 3.0278 1.3746 3.1187 42 1 3.9232 -0.0051 0.4549 43 1 3.8249 -1.7937 0.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866333606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = 4.404348 kcal Electronic energy + Delta-G solvation = -25627.862581 eV Core-core repulsion = 22118.930862 eV Total energy + Delta-G solvation = -3508.931719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00353 -37.87934 -35.93567 -33.79384 -33.07001 -33.01023 -29.91114 -29.09460 -28.46196 -26.45982 -25.61911 -24.04605 -23.49620 -21.92421 -19.87756 -19.01209 -18.67631 -17.63194 -17.16391 -16.15189 -15.72919 -15.59078 -15.32297 -15.08784 -14.57282 -14.41269 -13.96057 -13.70259 -13.61320 -13.33315 -13.09829 -12.44482 -12.43061 -12.32976 -12.19153 -12.04813 -11.91040 -11.82527 -11.71800 -11.66521 -11.43422 -11.29537 -11.06224 -10.92221 -10.73369 -10.38965 -10.09322 -10.06522 -9.58948 -9.20708 -8.49542 -8.38608 -8.15141 -7.80666 -7.43582 -7.08280 -7.00061 -4.47612 1.71906 2.12272 2.20656 2.98610 3.01985 3.10391 3.18132 3.68756 3.74210 3.84800 3.89549 4.08456 4.28898 4.49260 4.51543 4.64520 4.79572 4.84862 5.05843 5.18727 5.20709 5.30520 5.32359 5.37589 5.46018 5.51700 5.63818 5.77253 5.79403 5.88611 6.02379 6.07339 6.11211 6.72077 6.83675 6.87486 6.89299 7.20184 7.25022 7.39776 7.52521 7.75867 8.40973 8.53212 8.66107 8.85222 9.66017 9.91511 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.003407 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.698925 B = 8216.507855 C = 8912.856618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.015 3.985 4 C 0.099 3.901 5 C 0.142 3.858 6 N -0.739 5.739 7 C 0.600 3.400 8 O -0.567 6.567 9 C -0.426 4.426 10 S -0.046 6.046 11 C -0.208 4.208 12 C -0.099 4.099 13 C 0.141 3.859 14 C -0.379 4.379 15 H 0.111 0.889 16 C 0.068 3.932 17 N -0.780 5.780 18 Si 0.923 3.077 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.154 4.154 23 C -0.065 4.065 24 S -0.289 6.289 25 C -0.056 4.056 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.287 0.713 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 15.151 4.548 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.133 4.133 4 C 0.007 3.993 5 C 0.017 3.983 6 N -0.394 5.394 7 C 0.397 3.603 8 O -0.451 6.451 9 C -0.545 4.545 10 S 0.209 5.791 11 C -0.342 4.342 12 C -0.132 4.132 13 C 0.129 3.871 14 C -0.410 4.410 15 H 0.128 0.872 16 C -0.154 4.154 17 N -0.404 5.404 18 Si 0.746 3.254 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.178 1.178 22 C -0.195 4.195 23 C -0.213 4.213 24 S -0.063 6.063 25 C -0.204 4.204 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.556 15.086 5.051 16.113 hybrid contribution -1.969 -0.653 0.095 2.077 sum 0.587 14.432 5.146 15.334 Atomic orbital electron populations 1.22542 0.86636 1.03517 1.00347 1.62227 1.08567 1.13335 1.40852 1.22529 1.01291 0.89098 1.00412 1.22047 0.93617 0.94965 0.88652 1.21253 0.99688 0.89506 0.87840 1.45698 1.56676 1.20059 1.16922 1.16843 0.78626 0.79222 0.85618 1.90655 1.41193 1.62528 1.50707 1.22595 1.26315 1.06147 0.99444 1.82751 1.59703 1.24048 1.12561 1.24952 1.07679 0.99102 1.02468 1.21691 0.97741 0.98483 0.95267 1.17928 0.88889 0.89903 0.90332 1.20007 1.17765 0.90128 1.13107 0.87159 1.26355 0.95557 0.99627 0.93837 1.69682 1.28898 1.14483 1.27345 0.86036 0.80166 0.78167 0.81000 1.18984 1.20013 1.17768 1.22756 0.98682 1.01962 0.96070 1.24052 0.94280 1.00107 1.02855 1.88133 1.43418 1.63270 1.11461 1.24395 0.94845 1.07242 0.93947 0.95539 0.91101 0.90043 0.91085 0.91118 0.95204 0.91358 0.91788 0.76860 0.84606 0.83955 0.90188 0.89620 0.90026 0.87779 0.89538 0.88313 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.79 60.07 0.53 0.72 16 2 N -0.53 -5.97 4.28 -234.74 -1.00 -6.97 16 3 C 0.01 0.13 8.98 60.06 0.54 0.67 16 4 C 0.10 1.18 0.23 -131.03 -0.03 1.15 16 5 C 0.14 2.27 3.43 -4.04 -0.01 2.25 16 6 N -0.74 -14.05 4.81 -61.75 -0.30 -14.34 16 7 C 0.60 14.57 7.76 -13.05 -0.10 14.47 16 8 O -0.57 -15.44 14.46 5.13 0.07 -15.37 16 9 C -0.43 -10.77 6.51 -35.88 -0.23 -11.00 16 10 S -0.05 -0.98 22.25 -107.50 -2.39 -3.37 16 11 C -0.21 -4.55 11.07 28.86 0.32 -4.23 16 12 C -0.10 -2.43 9.04 -39.12 -0.35 -2.78 16 13 C 0.14 3.77 5.67 -106.21 -0.60 3.16 16 14 C -0.38 -10.27 8.50 -37.94 -0.32 -10.60 16 15 H 0.11 3.14 6.06 -52.48 -0.32 2.82 16 16 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 17 N -0.78 -19.05 10.87 55.57 0.60 -18.44 16 18 Si 0.92 18.69 29.57 -169.99 -5.03 13.67 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.25 -5.33 7.11 56.52 0.40 -4.92 16 22 C -0.15 -1.50 4.45 -26.17 -0.12 -1.62 16 23 C -0.06 -0.58 7.46 37.81 0.28 -0.30 16 24 S -0.29 -3.57 23.27 -107.50 -2.50 -6.07 16 25 C -0.06 -0.68 6.08 37.82 0.23 -0.45 16 26 H 0.03 0.25 6.50 -51.93 -0.34 -0.08 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.08 1.13 6.09 -51.93 -0.32 0.81 16 29 H 0.07 0.61 6.25 -51.93 -0.32 0.28 16 30 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 31 H 0.03 0.24 6.12 -51.93 -0.32 -0.08 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.06 6.46 -51.93 -0.34 0.72 16 34 H 0.40 7.15 6.61 -40.82 -0.27 6.88 16 35 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.14 3.46 6.46 -52.48 -0.34 3.12 16 37 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 38 H 0.09 0.87 7.51 -51.93 -0.39 0.48 16 39 H 0.08 0.70 4.85 -51.93 -0.25 0.45 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.07 5.80 -51.93 -0.30 0.76 16 43 H 0.12 1.63 6.94 -51.93 -0.36 1.27 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -29.12 356.73 -10.66 -39.78 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.53 Total: 12.73 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 0.03 Total: -6.98 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.70 Total: -39.76 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -4.89 Total: -9.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.12 -10.66 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866333606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.181 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds