Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00103 * 2 1 4 4 C 1.46894 * 110.99771 * 123.95637 * 2 1 3 5 5 C 1.53004 * 108.71403 * 55.80544 * 4 2 1 6 6 N 1.46502 * 109.46600 * 55.29178 * 5 4 2 7 7 C 1.34777 * 119.99743 * 184.54708 * 6 5 4 8 8 O 1.21761 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.46242 * 119.99963 * 180.02562 * 7 6 5 10 10 S 1.75660 * 125.22800 * 0.02562 * 9 7 6 11 11 C 1.75477 * 92.09496 * 179.97438 * 10 9 7 12 12 C 1.32767 * 111.35721 * 359.97438 * 11 10 9 13 13 C 1.39547 * 125.22658 * 179.71746 * 9 7 6 14 14 C 1.40535 * 123.71769 * 0.02562 * 13 9 7 15 15 H 1.08003 * 119.99691 * 24.08794 * 14 13 9 16 16 C 1.40303 * 120.00464 * 204.08581 * 14 13 9 17 17 N 1.30646 * 119.99707 * 10.08481 * 16 14 13 18 18 Si 1.86801 * 120.00462 * 190.08750 * 16 14 13 19 19 H 1.48504 * 109.47061 * 89.99726 * 18 16 14 20 20 H 1.48496 * 109.47199 * 209.99801 * 18 16 14 21 21 H 1.48499 * 109.46882 * 330.00217 * 18 16 14 22 22 C 1.52820 * 109.05392 * 297.12610 * 4 2 1 23 23 C 1.54255 * 112.66596 * 239.21132 * 22 4 2 24 24 S 1.83961 * 102.58036 * 335.48043 * 23 22 4 25 25 C 1.54262 * 108.87077 * 174.26897 * 4 2 1 26 26 H 1.08994 * 109.47149 * 299.15718 * 1 2 3 27 27 H 1.09002 * 109.46830 * 59.16135 * 1 2 3 28 28 H 1.09003 * 109.47115 * 179.15655 * 1 2 3 29 29 H 1.08996 * 109.47356 * 191.91046 * 3 2 1 30 30 H 1.09005 * 109.46890 * 311.91273 * 3 2 1 31 31 H 1.09004 * 109.46750 * 71.90844 * 3 2 1 32 32 H 1.08996 * 109.47454 * 175.29045 * 5 4 2 33 33 H 1.08996 * 109.47405 * 295.29465 * 5 4 2 34 34 H 0.96998 * 120.00621 * 4.54669 * 6 5 4 35 35 H 1.07987 * 124.32190 * 180.02562 * 11 10 9 36 36 H 1.08003 * 122.78126 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99710 * 179.97438 * 17 16 14 38 38 H 1.08999 * 108.82075 * 118.37234 * 22 4 2 39 39 H 1.09006 * 108.71994 * 359.97438 * 22 4 2 40 40 H 1.09000 * 110.78647 * 217.21094 * 23 22 4 41 41 H 1.08997 * 110.95652 * 93.83043 * 23 22 4 42 42 H 1.09005 * 110.78349 * 27.07271 * 25 4 2 43 43 H 1.08996 * 110.78909 * 263.81347 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.4110 -2.1792 1.0902 6 7 1.7020 -2.7846 -0.2118 7 6 1.2035 -3.9990 -0.5168 8 8 0.5116 -4.5933 0.2899 9 6 1.4944 -4.6036 -1.8162 10 16 2.4742 -3.8722 -3.0774 11 6 2.2470 -5.2489 -4.1416 12 6 1.4888 -6.1791 -3.5736 13 6 1.0413 -5.8528 -2.2423 14 6 0.2349 -6.6982 -1.4613 15 1 -0.3813 -6.2836 -0.6771 16 6 0.2302 -8.0807 -1.7003 17 7 1.1126 -8.6072 -2.5071 18 14 -1.0379 -9.1687 -0.8650 19 1 -2.2467 -9.2676 -1.7219 20 1 -0.4671 -10.5236 -0.6561 21 1 -1.4081 -8.5798 0.4470 22 6 1.5593 -0.0916 2.4377 23 6 2.7537 0.3379 3.3142 24 16 4.0862 -0.8046 2.7635 25 6 3.5302 -0.8564 1.0108 26 1 -0.3633 0.5007 0.8974 27 1 -0.3633 0.5268 -0.8824 28 1 -0.3633 -1.0276 -0.0151 29 1 3.0644 1.3503 -0.2121 30 1 1.4848 1.9566 -0.7648 31 1 1.8278 1.8249 0.9769 32 1 1.8573 -2.7837 1.8798 33 1 0.3318 -2.1312 1.2355 34 1 2.2535 -2.3114 -0.8543 35 1 2.6705 -5.3296 -5.1316 36 1 1.2318 -7.1051 -4.0664 37 1 1.1096 -9.5630 -2.6720 38 1 0.9389 -0.7867 3.0034 39 1 0.9667 0.7899 2.1929 40 1 2.5306 0.1911 4.3710 41 1 3.0278 1.3746 3.1187 42 1 3.9232 -0.0051 0.4549 43 1 3.8249 -1.7937 0.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866333606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -14.065825 kcal Electronic energy + Delta-G solvation = -25628.663508 eV Core-core repulsion = 22118.930862 eV Total energy + Delta-G solvation = -3509.732646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12262 -39.60886 -37.78049 -35.16986 -34.88499 -34.17270 -31.17005 -30.62997 -29.66134 -28.00980 -26.78131 -25.22356 -24.42257 -23.64147 -21.65615 -20.63807 -20.05611 -19.18525 -18.13706 -17.65515 -17.26881 -17.07462 -16.58143 -16.20208 -16.08252 -15.52938 -15.43571 -15.20758 -15.07013 -14.32558 -14.20864 -14.03763 -13.88582 -13.75951 -13.59335 -13.16024 -13.10459 -13.05690 -12.93831 -12.85532 -12.71329 -12.67794 -12.56195 -12.19398 -12.07592 -12.01206 -11.78150 -11.39254 -11.03663 -10.96646 -10.35900 -9.87669 -9.32326 -9.30048 -8.90537 -8.83601 -8.78111 -6.42309 0.33621 0.81877 1.25334 1.33738 1.35021 1.39889 1.48046 1.81541 1.99909 2.18442 2.55682 2.58847 2.96716 3.24371 3.34355 3.51774 3.70483 3.93953 4.02262 4.26494 4.36441 4.39174 4.41963 4.51508 4.52628 4.58464 4.60993 4.65171 4.70087 4.83850 4.93217 5.03435 5.04059 5.09977 5.11957 5.29711 5.41576 5.60108 5.74599 5.86756 5.98103 6.04824 6.42485 6.61348 6.75866 7.03729 7.79289 8.10260 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.003407 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.698925 B = 8216.507855 C = 8912.856618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.015 3.985 4 C 0.112 3.888 5 C 0.144 3.856 6 N -0.720 5.720 7 C 0.591 3.409 8 O -0.607 6.607 9 C -0.462 4.462 10 S 0.014 5.986 11 C -0.194 4.194 12 C -0.129 4.129 13 C 0.112 3.888 14 C -0.419 4.419 15 H 0.083 0.917 16 C 0.036 3.964 17 N -0.796 5.796 18 Si 0.988 3.012 19 H -0.250 1.250 20 H -0.255 1.255 21 H -0.273 1.273 22 C -0.150 4.150 23 C -0.045 4.045 24 S -0.339 6.339 25 C -0.047 4.047 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.403 0.597 35 H 0.176 0.824 36 H 0.139 0.861 37 H 0.300 0.700 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 17.215 4.170 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.132 4.132 4 C 0.020 3.980 5 C 0.019 3.981 6 N -0.372 5.372 7 C 0.387 3.613 8 O -0.494 6.494 9 C -0.581 4.581 10 S 0.270 5.730 11 C -0.328 4.328 12 C -0.161 4.161 13 C 0.101 3.899 14 C -0.450 4.450 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.420 5.420 18 Si 0.808 3.192 19 H -0.174 1.174 20 H -0.179 1.179 21 H -0.197 1.197 22 C -0.191 4.191 23 C -0.193 4.193 24 S -0.113 6.113 25 C -0.196 4.196 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.193 0.807 36 H 0.156 0.844 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.001 17.204 4.653 18.073 hybrid contribution -2.023 -1.165 0.197 2.343 sum 0.979 16.038 4.850 16.784 Atomic orbital electron populations 1.22467 0.86678 1.01704 1.01831 1.62182 1.08664 1.15176 1.40574 1.22596 1.01473 0.87398 1.01751 1.21861 0.93165 0.92547 0.90454 1.21355 0.99419 0.91877 0.85458 1.45460 1.55266 1.18423 1.18076 1.17028 0.78512 0.80415 0.85338 1.90618 1.42993 1.63931 1.51842 1.23077 1.27108 1.06767 1.01160 1.82357 1.57745 1.22715 1.10209 1.25453 1.05492 0.98098 1.03781 1.21577 1.00154 0.99624 0.94779 1.18378 0.89291 0.90710 0.91537 1.19976 1.19367 0.91942 1.13753 0.89943 1.27025 0.97174 0.99778 0.94406 1.69664 1.29306 1.15534 1.27545 0.85109 0.78227 0.76810 0.79078 1.17353 1.17926 1.19729 1.22692 0.99143 1.02409 0.94831 1.24162 0.91693 1.00135 1.03312 1.88336 1.45521 1.65190 1.12283 1.24298 0.94865 1.06679 0.93723 0.93557 0.90114 0.93444 0.90697 0.90039 0.93575 0.93293 0.92549 0.76105 0.80708 0.84375 0.88902 0.90253 0.87868 0.86361 0.87070 0.86435 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.79 127.69 1.12 1.57 16 2 N -0.54 -11.27 4.28 -896.58 -3.84 -15.11 16 3 C 0.01 0.21 8.98 127.69 1.15 1.36 16 4 C 0.11 2.54 0.23 3.90 0.00 2.54 16 5 C 0.14 4.72 3.43 86.38 0.30 5.02 16 6 N -0.72 -28.26 4.81 -467.47 -2.25 -30.51 16 7 C 0.59 30.11 7.76 86.32 0.67 30.78 16 8 O -0.61 -35.27 14.46 -4.54 -0.07 -35.33 16 9 C -0.46 -24.09 6.51 24.67 0.16 -23.93 16 10 S 0.01 0.58 22.25 -56.49 -1.26 -0.68 16 11 C -0.19 -8.22 11.07 66.64 0.74 -7.48 16 12 C -0.13 -6.38 9.04 22.61 0.20 -6.17 16 13 C 0.11 6.24 5.67 -20.89 -0.12 6.12 16 14 C -0.42 -24.00 8.50 23.33 0.20 -23.80 16 15 H 0.08 5.06 6.06 -2.91 -0.02 5.04 16 16 C 0.04 1.81 5.39 85.37 0.46 2.27 16 17 N -0.80 -39.46 10.87 21.89 0.24 -39.22 16 18 Si 0.99 39.21 29.57 68.60 2.03 41.23 16 19 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 20 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C -0.15 -2.58 4.45 30.96 0.14 -2.44 16 23 C -0.05 -0.69 7.46 72.41 0.54 -0.15 16 24 S -0.34 -8.05 23.27 -56.49 -1.31 -9.37 16 25 C -0.05 -1.11 6.08 72.41 0.44 -0.67 16 26 H 0.05 0.78 6.50 -2.39 -0.02 0.76 16 27 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 28 H 0.05 1.33 6.09 -2.39 -0.01 1.31 16 29 H 0.07 1.02 6.25 -2.39 -0.01 1.01 16 30 H 0.08 1.02 8.02 -2.38 -0.02 1.00 16 31 H 0.05 0.52 6.12 -2.38 -0.01 0.50 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.95 6.46 -2.39 -0.02 1.94 16 34 H 0.40 14.65 6.61 -92.71 -0.61 14.04 16 35 H 0.18 5.93 8.06 -2.92 -0.02 5.90 16 36 H 0.14 6.84 6.46 -2.91 -0.02 6.82 16 37 H 0.30 13.09 8.29 -92.71 -0.77 12.32 16 38 H 0.08 1.51 7.51 -2.39 -0.02 1.49 16 39 H 0.10 1.38 4.85 -2.38 -0.01 1.37 16 40 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.12 2.29 5.80 -2.38 -0.01 2.28 16 43 H 0.09 2.57 6.94 -2.39 -0.02 2.56 16 Total: -1.00 -67.49 356.73 -0.01 -67.50 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.45 Total: 36.46 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 6.00 Total: -14.99 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -5.85 Total: -84.84 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.33 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -2.57 Total: -10.05 kcal Total: -67.49 -0.01 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866333606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.439 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds