Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81396 * 103.00018 * 2 1 4 4 H 1.09001 * 110.30786 * 304.28386 * 3 2 1 5 5 C 1.54390 * 110.34025 * 66.46018 * 3 2 1 6 6 N 1.48148 * 104.61818 * 142.84345 * 5 3 2 7 7 C 1.34773 * 127.84092 * 140.41311 * 6 5 3 8 8 O 1.21759 * 120.00140 * 176.25248 * 7 6 5 9 9 C 1.46238 * 119.99876 * 356.25252 * 7 6 5 10 10 S 1.75664 * 125.22933 * 353.95915 * 9 7 6 11 11 C 1.75469 * 92.09493 * 179.73381 * 10 9 7 12 12 C 1.32766 * 111.36270 * 359.97438 * 11 10 9 13 13 C 1.39552 * 125.22893 * 173.65296 * 9 7 6 14 14 C 1.40541 * 123.71140 * 0.23859 * 13 9 7 15 15 H 1.07993 * 120.00188 * 333.35558 * 14 13 9 16 16 C 1.40307 * 119.99385 * 153.35583 * 14 13 9 17 17 N 1.30638 * 120.00353 * 1.56602 * 16 14 13 18 18 Si 1.86800 * 119.99720 * 181.56656 * 16 14 13 19 19 H 1.48498 * 109.46897 * 60.00310 * 18 16 14 20 20 H 1.48502 * 109.47037 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47311 * 300.00270 * 18 16 14 22 22 C 1.48144 * 104.32264 * 320.66856 * 6 5 3 23 23 C 1.53998 * 104.81517 * 39.28004 * 22 6 5 24 24 H 1.08997 * 110.24780 * 95.28187 * 23 22 6 25 25 N 1.46898 * 110.48646 * 217.46389 * 23 22 6 26 26 C 1.46894 * 111.00108 * 190.15392 * 25 23 22 27 27 C 1.46905 * 111.00242 * 314.11345 * 25 23 22 28 28 H 1.09001 * 109.46869 * 299.99753 * 1 2 3 29 29 H 1.08996 * 109.46979 * 59.99581 * 1 2 3 30 30 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.08997 * 110.41184 * 24.05556 * 5 3 2 32 32 H 1.09000 * 110.40376 * 261.62382 * 5 3 2 33 33 H 1.08004 * 124.32161 * 179.97438 * 11 10 9 34 34 H 1.07997 * 122.78671 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00361 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.40737 * 158.10997 * 22 6 5 37 37 H 1.09002 * 110.40920 * 280.54723 * 22 6 5 38 38 H 1.09001 * 109.46987 * 60.00045 * 26 25 23 39 39 H 1.09000 * 109.47257 * 180.02562 * 26 25 23 40 40 H 1.09000 * 109.47177 * 300.00176 * 26 25 23 41 41 H 1.08998 * 109.47017 * 66.54746 * 27 25 23 42 42 H 1.09003 * 109.46796 * 186.54989 * 27 25 23 43 43 H 1.09006 * 109.46585 * 306.54709 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7462 2.2656 -0.8446 5 6 1.7795 2.4204 1.3272 6 7 2.8413 3.4081 1.6303 7 6 2.6965 4.6481 2.1379 8 8 3.6793 5.3191 2.3958 9 6 1.3589 5.1879 2.3790 10 16 -0.1466 4.4069 1.9215 11 6 -1.1040 5.7174 2.5885 12 6 -0.3322 6.6622 3.1123 13 6 1.0821 6.3997 3.0134 14 6 2.0729 7.2680 3.5029 15 1 3.0351 6.8772 3.7989 16 6 1.8117 8.6426 3.6070 17 7 0.6375 9.1112 3.2778 18 14 3.1430 9.8027 4.2163 19 1 4.3171 9.7282 3.3101 20 1 2.6190 11.1921 4.2335 21 1 3.5514 9.4101 5.5889 22 6 4.0979 2.7258 1.2429 23 6 3.7511 1.9672 -0.0516 24 1 4.0265 2.5618 -0.9226 25 7 4.4351 0.6676 -0.0848 26 6 4.3100 0.0405 -1.4073 27 6 5.8458 0.8050 0.3014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7195 1.6722 2.1175 32 1 0.8192 2.9209 1.2027 33 1 -2.1834 5.7512 2.5747 34 1 -0.7306 7.5536 3.5738 35 1 0.4568 10.0615 3.3501 36 1 4.8847 3.4564 1.0549 37 1 4.4055 2.0259 2.0198 38 1 4.7560 0.6895 -2.1608 39 1 4.8248 -0.9203 -1.4040 40 1 3.2559 -0.1133 -1.6382 41 1 5.9087 1.0958 1.3500 42 1 6.3564 -0.1471 0.1569 43 1 6.3188 1.5684 -0.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867019488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = 18.240310 kcal Electronic energy + Delta-G solvation = -25616.526271 eV Core-core repulsion = 22108.194524 eV Total energy + Delta-G solvation = -3508.331746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.57220 -37.63203 -36.10564 -35.12713 -33.05069 -30.57654 -29.60041 -28.78895 -28.54021 -27.19780 -26.25812 -24.03987 -22.96165 -21.83557 -20.17107 -19.58329 -18.65627 -17.20055 -16.83783 -16.22829 -15.61573 -15.41997 -15.06098 -14.98727 -14.51068 -14.17998 -14.09869 -13.74436 -13.48732 -13.35575 -13.11468 -12.65064 -12.58320 -12.37815 -12.30697 -12.15572 -11.86396 -11.72906 -11.59092 -11.51542 -11.34867 -11.08687 -11.03717 -10.98361 -10.89002 -10.35818 -10.19064 -9.73239 -9.49049 -9.07633 -8.58964 -8.43732 -8.06209 -7.49453 -7.34623 -7.16150 -7.02284 -4.58194 1.74226 2.12367 2.68885 2.97788 2.99703 3.03241 3.05128 3.58013 3.63593 3.78912 3.85158 4.01093 4.29946 4.51183 4.68102 5.10818 5.14230 5.22201 5.24081 5.25783 5.30710 5.36702 5.38622 5.52948 5.60047 5.81541 5.82642 5.85521 5.97849 6.01224 6.04904 6.07215 6.12440 6.26764 6.79372 6.90031 6.96876 7.03909 7.21472 7.24020 7.48206 7.71682 8.29369 8.41071 8.56759 8.70503 9.45325 9.86379 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003722 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.835423 B = 7521.304984 C = 9061.442314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.174 6.174 3 C -0.073 4.073 4 H 0.093 0.907 5 C 0.117 3.883 6 N -0.635 5.635 7 C 0.622 3.378 8 O -0.556 6.556 9 C -0.425 4.425 10 S -0.039 6.039 11 C -0.225 4.225 12 C -0.100 4.100 13 C 0.144 3.856 14 C -0.375 4.375 15 H 0.105 0.895 16 C 0.068 3.932 17 N -0.784 5.784 18 Si 0.929 3.071 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.259 1.259 22 C 0.119 3.881 23 C 0.089 3.911 24 H 0.061 0.939 25 N -0.527 5.527 26 C 0.010 3.990 27 C 0.020 3.980 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.288 0.712 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -12.665 -6.382 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.053 5.947 3 C -0.204 4.204 4 H 0.112 0.888 5 C -0.011 4.011 6 N -0.372 5.372 7 C 0.422 3.578 8 O -0.438 6.438 9 C -0.544 4.544 10 S 0.216 5.784 11 C -0.358 4.358 12 C -0.132 4.132 13 C 0.133 3.867 14 C -0.406 4.406 15 H 0.123 0.877 16 C -0.153 4.153 17 N -0.408 5.408 18 Si 0.752 3.248 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.006 4.006 23 C -0.021 4.021 24 H 0.079 0.921 25 N -0.251 5.251 26 C -0.139 4.139 27 C -0.128 4.128 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.694 -14.431 -6.556 15.941 hybrid contribution 0.037 3.389 0.121 3.391 sum 1.731 -11.043 -6.436 12.898 Atomic orbital electron populations 1.23653 0.98435 1.05814 1.04999 1.87106 1.02644 1.08000 1.96923 1.24384 0.98783 0.95531 1.01702 0.88842 1.22894 0.92701 0.91555 0.93919 1.48726 1.06408 1.14407 1.67674 1.16568 0.88259 0.77472 0.75495 1.90687 1.40282 1.57970 1.54879 1.22520 0.91234 1.07787 1.32822 1.82547 1.00134 1.26247 1.69488 1.25443 1.01597 1.00831 1.07907 1.21871 0.93269 0.98391 0.99625 1.17949 0.91663 0.89581 0.87556 1.19879 1.00626 0.90425 1.29695 0.87707 1.26353 0.96670 0.99991 0.92310 1.69603 1.21627 1.16482 1.33122 0.85998 0.80784 0.77459 0.80547 1.18243 1.20115 1.18368 1.22086 0.89008 0.95168 0.94318 1.22363 0.91223 0.89698 0.98828 0.92097 1.61988 1.13489 1.21022 1.28650 1.22847 1.04467 0.98517 0.88102 1.22459 0.87788 1.00995 1.01574 0.90448 0.90989 0.88605 0.90358 0.89005 0.84858 0.83239 0.90067 0.90208 0.90733 0.96143 0.91398 0.88465 0.90762 0.91354 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.62 101.05 1.07 -0.58 16 2 S -0.17 -2.11 17.15 -107.50 -1.84 -3.95 16 3 C -0.07 -1.03 3.45 -25.33 -0.09 -1.11 16 4 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.12 1.96 6.03 -2.41 -0.01 1.94 16 6 N -0.64 -12.70 3.32 -171.24 -0.57 -13.27 16 7 C 0.62 15.45 7.85 -13.05 -0.10 15.35 16 8 O -0.56 -15.34 14.87 5.14 0.08 -15.26 16 9 C -0.43 -10.77 6.44 -35.88 -0.23 -11.00 16 10 S -0.04 -0.83 18.81 -107.50 -2.02 -2.86 16 11 C -0.23 -4.90 11.07 28.86 0.32 -4.58 16 12 C -0.10 -2.44 9.08 -39.12 -0.36 -2.80 16 13 C 0.14 3.84 5.69 -106.20 -0.60 3.24 16 14 C -0.38 -10.12 8.39 -37.94 -0.32 -10.44 16 15 H 0.11 2.95 6.28 -52.49 -0.33 2.62 16 16 C 0.07 1.66 5.46 -17.28 -0.09 1.56 16 17 N -0.78 -18.91 10.59 55.57 0.59 -18.32 16 18 Si 0.93 18.72 29.56 -169.99 -5.03 13.69 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C 0.12 1.95 5.49 -2.62 -0.01 1.94 16 23 C 0.09 1.24 2.82 -66.52 -0.19 1.05 16 24 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 25 N -0.53 -6.33 3.79 -241.73 -0.92 -7.24 16 26 C 0.01 0.10 8.79 60.06 0.53 0.63 16 27 C 0.02 0.21 8.96 60.07 0.54 0.75 16 28 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.08 1.30 7.82 -51.93 -0.41 0.90 16 32 H 0.09 1.64 3.54 -21.33 -0.08 1.57 16 33 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 34 H 0.15 3.65 6.21 -52.49 -0.33 3.32 16 35 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 36 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 37 H 0.07 1.18 6.77 -51.93 -0.35 0.83 16 38 H 0.02 0.20 8.12 -51.93 -0.42 -0.22 16 39 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.10 1.04 5.26 -35.28 -0.19 0.86 16 41 H 0.07 0.81 6.45 -51.93 -0.33 0.47 16 42 H 0.07 0.61 8.01 -51.93 -0.42 0.20 16 43 H 0.03 0.28 8.12 -51.93 -0.42 -0.15 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -28.82 359.07 -9.61 -38.44 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.76 Total: 7.41 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.45 Total: -4.04 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.90 Total: -38.83 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -3.87 Total: -6.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.82 -9.61 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867019488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.676 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds