Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81396 * 103.00018 * 2 1 4 4 H 1.09001 * 110.30786 * 304.28386 * 3 2 1 5 5 C 1.54390 * 110.34025 * 66.46018 * 3 2 1 6 6 N 1.48148 * 104.61818 * 142.84345 * 5 3 2 7 7 C 1.34773 * 127.84092 * 140.41311 * 6 5 3 8 8 O 1.21759 * 120.00140 * 176.25248 * 7 6 5 9 9 C 1.46238 * 119.99876 * 356.25252 * 7 6 5 10 10 S 1.75664 * 125.22933 * 353.95915 * 9 7 6 11 11 C 1.75469 * 92.09493 * 179.73381 * 10 9 7 12 12 C 1.32766 * 111.36270 * 359.97438 * 11 10 9 13 13 C 1.39552 * 125.22893 * 173.65296 * 9 7 6 14 14 C 1.40541 * 123.71140 * 0.23859 * 13 9 7 15 15 H 1.07993 * 120.00188 * 333.35558 * 14 13 9 16 16 C 1.40307 * 119.99385 * 153.35583 * 14 13 9 17 17 N 1.30638 * 120.00353 * 1.56602 * 16 14 13 18 18 Si 1.86800 * 119.99720 * 181.56656 * 16 14 13 19 19 H 1.48498 * 109.46897 * 60.00310 * 18 16 14 20 20 H 1.48502 * 109.47037 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47311 * 300.00270 * 18 16 14 22 22 C 1.48144 * 104.32264 * 320.66856 * 6 5 3 23 23 C 1.53998 * 104.81517 * 39.28004 * 22 6 5 24 24 H 1.08997 * 110.24780 * 95.28187 * 23 22 6 25 25 N 1.46898 * 110.48646 * 217.46389 * 23 22 6 26 26 C 1.46894 * 111.00108 * 190.15392 * 25 23 22 27 27 C 1.46905 * 111.00242 * 314.11345 * 25 23 22 28 28 H 1.09001 * 109.46869 * 299.99753 * 1 2 3 29 29 H 1.08996 * 109.46979 * 59.99581 * 1 2 3 30 30 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.08997 * 110.41184 * 24.05556 * 5 3 2 32 32 H 1.09000 * 110.40376 * 261.62382 * 5 3 2 33 33 H 1.08004 * 124.32161 * 179.97438 * 11 10 9 34 34 H 1.07997 * 122.78671 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00361 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.40737 * 158.10997 * 22 6 5 37 37 H 1.09002 * 110.40920 * 280.54723 * 22 6 5 38 38 H 1.09001 * 109.46987 * 60.00045 * 26 25 23 39 39 H 1.09000 * 109.47257 * 180.02562 * 26 25 23 40 40 H 1.09000 * 109.47177 * 300.00176 * 26 25 23 41 41 H 1.08998 * 109.47017 * 66.54746 * 27 25 23 42 42 H 1.09003 * 109.46796 * 186.54989 * 27 25 23 43 43 H 1.09006 * 109.46585 * 306.54709 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7462 2.2656 -0.8446 5 6 1.7795 2.4204 1.3272 6 7 2.8413 3.4081 1.6303 7 6 2.6965 4.6481 2.1379 8 8 3.6793 5.3191 2.3958 9 6 1.3589 5.1879 2.3790 10 16 -0.1466 4.4069 1.9215 11 6 -1.1040 5.7174 2.5885 12 6 -0.3322 6.6622 3.1123 13 6 1.0821 6.3997 3.0134 14 6 2.0729 7.2680 3.5029 15 1 3.0351 6.8772 3.7989 16 6 1.8117 8.6426 3.6070 17 7 0.6375 9.1112 3.2778 18 14 3.1430 9.8027 4.2163 19 1 4.3171 9.7282 3.3101 20 1 2.6190 11.1921 4.2335 21 1 3.5514 9.4101 5.5889 22 6 4.0979 2.7258 1.2429 23 6 3.7511 1.9672 -0.0516 24 1 4.0265 2.5618 -0.9226 25 7 4.4351 0.6676 -0.0848 26 6 4.3100 0.0405 -1.4073 27 6 5.8458 0.8050 0.3014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7195 1.6722 2.1175 32 1 0.8192 2.9209 1.2027 33 1 -2.1834 5.7512 2.5747 34 1 -0.7306 7.5536 3.5738 35 1 0.4568 10.0615 3.3501 36 1 4.8847 3.4564 1.0549 37 1 4.4055 2.0259 2.0198 38 1 4.7560 0.6895 -2.1608 39 1 4.8248 -0.9203 -1.4040 40 1 3.2559 -0.1133 -1.6382 41 1 5.9087 1.0958 1.3500 42 1 6.3564 -0.1471 0.1569 43 1 6.3188 1.5684 -0.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867019488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = 1.135636 kcal Electronic energy + Delta-G solvation = -25617.267985 eV Core-core repulsion = 22108.194524 eV Total energy + Delta-G solvation = -3509.073461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.99128 -39.23662 -37.80099 -36.60260 -34.90225 -32.00404 -31.13812 -30.15850 -29.53510 -28.18246 -28.00096 -25.46408 -24.13642 -23.55182 -21.56533 -21.05373 -20.50396 -18.82356 -18.06407 -17.95028 -17.20456 -16.79631 -16.41811 -16.16081 -15.72136 -15.63485 -15.55721 -15.22369 -14.87745 -14.38788 -14.18717 -14.11254 -14.03488 -13.84478 -13.68289 -13.34952 -13.30746 -13.15633 -13.02344 -12.86819 -12.75618 -12.59844 -12.47151 -12.19332 -12.09583 -12.03044 -11.95187 -11.30283 -10.95592 -10.57127 -10.47076 -9.77134 -9.37903 -9.32012 -8.95223 -8.83280 -8.29951 -6.50248 0.26781 0.72635 1.30515 1.31982 1.36152 1.43626 1.72442 1.73908 1.97440 2.15153 2.16257 2.45133 2.95845 3.24042 3.32330 3.40004 3.92514 4.09279 4.14755 4.28340 4.33915 4.43728 4.47025 4.49922 4.51901 4.58798 4.68621 4.70436 4.74444 4.78003 4.85345 4.96295 5.05127 5.06090 5.22391 5.30681 5.34037 5.45401 5.60253 5.86028 5.97079 6.08391 6.34514 6.54701 6.67886 6.83856 7.57881 8.07188 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003722 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.835423 B = 7521.304984 C = 9061.442314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.163 6.163 3 C -0.071 4.071 4 H 0.097 0.903 5 C 0.118 3.882 6 N -0.638 5.638 7 C 0.612 3.388 8 O -0.599 6.599 9 C -0.462 4.462 10 S 0.030 5.970 11 C -0.215 4.215 12 C -0.131 4.131 13 C 0.115 3.885 14 C -0.415 4.415 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.797 5.797 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.249 1.249 21 H -0.256 1.256 22 C 0.118 3.882 23 C 0.100 3.900 24 H 0.060 0.940 25 N -0.531 5.531 26 C 0.011 3.989 27 C 0.019 3.981 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.300 0.700 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.024 0.976 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 -14.411 -7.536 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.064 5.936 3 C -0.201 4.201 4 H 0.115 0.885 5 C -0.008 4.008 6 N -0.373 5.373 7 C 0.411 3.589 8 O -0.484 6.484 9 C -0.581 4.581 10 S 0.287 5.713 11 C -0.348 4.348 12 C -0.163 4.163 13 C 0.104 3.896 14 C -0.447 4.447 15 H 0.096 0.904 16 C -0.183 4.183 17 N -0.422 5.422 18 Si 0.810 3.190 19 H -0.197 1.197 20 H -0.172 1.172 21 H -0.180 1.180 22 C -0.005 4.005 23 C -0.010 4.010 24 H 0.078 0.922 25 N -0.256 5.256 26 C -0.137 4.137 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.188 0.812 34 H 0.161 0.839 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.718 -16.242 -7.742 18.007 hybrid contribution 0.279 3.717 0.409 3.749 sum 0.997 -12.525 -7.333 14.549 Atomic orbital electron populations 1.23745 0.96812 1.07170 1.05150 1.87080 1.04383 1.05289 1.96825 1.24267 0.98734 0.97345 0.99798 0.88457 1.23038 0.91309 0.90671 0.95798 1.48638 1.08932 1.13551 1.66221 1.16723 0.87842 0.78710 0.75636 1.90640 1.41433 1.59683 1.56693 1.22992 0.93667 1.08540 1.32853 1.82188 0.96733 1.24356 1.68047 1.25984 1.03510 1.00005 1.05312 1.21735 0.92544 0.99686 1.02307 1.18395 0.92986 0.90353 0.87899 1.19867 1.00015 0.92275 1.32494 0.90415 1.27018 0.98875 1.00305 0.92140 1.69594 1.22475 1.17518 1.32633 0.85127 0.77599 0.76668 0.79618 1.19714 1.17228 1.18008 1.22217 0.87313 0.94846 0.96116 1.22154 0.91538 0.90487 0.96863 0.92205 1.62020 1.14153 1.19520 1.29913 1.22869 1.04655 0.99087 0.87115 1.22502 0.87178 1.02147 1.01041 0.91005 0.90135 0.86664 0.89902 0.89931 0.81197 0.83865 0.88837 0.91671 0.90023 0.95754 0.89826 0.88630 0.91584 0.89327 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.62 113.37 1.20 -1.59 16 2 S -0.16 -3.51 17.15 -56.49 -0.97 -4.48 16 3 C -0.07 -1.86 3.45 31.50 0.11 -1.76 16 4 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 5 C 0.12 3.87 6.03 86.53 0.52 4.39 16 6 N -0.64 -25.97 3.32 -813.88 -2.70 -28.67 16 7 C 0.61 31.67 7.85 86.32 0.68 32.35 16 8 O -0.60 -35.11 14.87 -4.54 -0.07 -35.18 16 9 C -0.46 -24.08 6.44 24.67 0.16 -23.92 16 10 S 0.03 1.25 18.81 -56.49 -1.06 0.19 16 11 C -0.22 -9.11 11.07 66.64 0.74 -8.37 16 12 C -0.13 -6.49 9.08 22.60 0.21 -6.29 16 13 C 0.12 6.40 5.69 -20.89 -0.12 6.28 16 14 C -0.42 -23.70 8.39 23.34 0.20 -23.50 16 15 H 0.08 4.73 6.28 -2.91 -0.02 4.71 16 16 C 0.04 1.81 5.46 85.37 0.47 2.28 16 17 N -0.80 -39.15 10.59 21.89 0.23 -38.92 16 18 Si 0.99 39.29 29.56 68.60 2.03 41.32 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 C 0.12 3.95 5.49 86.40 0.47 4.42 16 23 C 0.10 2.66 2.82 45.69 0.13 2.79 16 24 H 0.06 1.62 8.06 -2.39 -0.02 1.60 16 25 N -0.53 -11.70 3.79 -918.70 -3.48 -15.18 16 26 C 0.01 0.20 8.79 127.69 1.12 1.33 16 27 C 0.02 0.37 8.96 127.69 1.14 1.51 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.65 7.82 -2.39 -0.02 2.63 16 32 H 0.08 2.85 3.54 -21.84 -0.08 2.77 16 33 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 34 H 0.14 7.16 6.21 -2.91 -0.02 7.14 16 35 H 0.30 13.00 8.29 -92.71 -0.77 12.24 16 36 H 0.06 2.35 7.92 -2.39 -0.02 2.33 16 37 H 0.08 2.60 6.77 -2.39 -0.02 2.58 16 38 H 0.02 0.42 8.12 -2.39 -0.02 0.40 16 39 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 40 H 0.10 1.77 5.26 -12.97 -0.07 1.70 16 41 H 0.07 1.38 6.45 -2.39 -0.02 1.37 16 42 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 43 H 0.03 0.53 8.12 -2.38 -0.02 0.51 16 Total: -1.00 -65.70 359.07 1.91 -63.79 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.90 Total: 27.20 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 7.03 Total: -10.08 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -5.95 Total: -82.77 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.07 Total: -35.18 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.03 Total: -4.29 kcal Total: -65.70 1.91 -63.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867019488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.929 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds