Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 102.99804 * 2 1 4 4 H 1.08998 * 110.30222 * 55.72806 * 3 2 1 5 5 C 1.54388 * 110.34600 * 293.54626 * 3 2 1 6 6 N 1.48144 * 104.61672 * 217.15619 * 5 3 2 7 7 C 1.34775 * 127.83924 * 219.58119 * 6 5 3 8 8 O 1.21759 * 120.00143 * 183.31731 * 7 6 5 9 9 C 1.46237 * 119.99812 * 3.32251 * 7 6 5 10 10 S 1.75670 * 125.22759 * 352.48759 * 9 7 6 11 11 C 1.75479 * 92.09291 * 180.02562 * 10 9 7 12 12 C 1.32772 * 111.35660 * 359.71063 * 11 10 9 13 13 C 1.39546 * 125.22861 * 172.51048 * 9 7 6 14 14 C 1.40535 * 123.71370 * 359.97438 * 13 9 7 15 15 H 1.08005 * 119.99935 * 333.73414 * 14 13 9 16 16 C 1.40308 * 120.00241 * 153.74070 * 14 13 9 17 17 N 1.30645 * 119.99953 * 340.36297 * 16 14 13 18 18 Si 1.86799 * 120.00127 * 160.35525 * 16 14 13 19 19 H 1.48501 * 109.47267 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47595 * 300.00275 * 18 16 14 21 21 H 1.48506 * 109.46749 * 60.00368 * 18 16 14 22 22 C 1.48147 * 104.32617 * 39.84846 * 6 5 3 23 23 C 1.54290 * 110.43053 * 177.95688 * 3 2 1 24 24 H 1.09008 * 110.34426 * 237.78967 * 23 3 2 25 25 N 1.46900 * 110.34274 * 0.04852 * 23 3 2 26 26 C 1.46898 * 111.00186 * 162.51247 * 25 23 3 27 27 C 1.46905 * 110.99978 * 286.46261 * 25 23 3 28 28 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47224 * 299.99739 * 1 2 3 30 30 H 1.09003 * 109.47616 * 59.99943 * 1 2 3 31 31 H 1.09000 * 110.40408 * 98.37413 * 5 3 2 32 32 H 1.08997 * 110.40564 * 335.94540 * 5 3 2 33 33 H 1.07992 * 124.31870 * 180.02562 * 11 10 9 34 34 H 1.07998 * 122.77607 * 180.25308 * 12 11 10 35 35 H 0.97000 * 119.99810 * 355.89519 * 17 16 14 36 36 H 1.09008 * 110.40937 * 78.93457 * 22 6 5 37 37 H 1.08994 * 110.40829 * 201.36713 * 22 6 5 38 38 H 1.09001 * 109.47436 * 57.92077 * 26 25 23 39 39 H 1.08999 * 109.47398 * 177.93093 * 26 25 23 40 40 H 1.09006 * 109.46967 * 297.92651 * 26 25 23 41 41 H 1.09004 * 109.46950 * 57.62818 * 27 25 23 42 42 H 1.08995 * 109.47433 * 177.62975 * 27 25 23 43 43 H 1.09005 * 109.46929 * 297.62893 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7461 2.2655 0.8448 5 6 1.7792 2.4206 -1.3270 6 7 2.8410 3.4083 -1.6301 7 6 2.6961 4.6484 -2.1377 8 8 3.6787 5.3223 -2.3882 9 6 1.3587 5.1845 -2.3874 10 16 -0.1385 4.2750 -2.2559 11 6 -1.1010 5.6698 -2.7112 12 6 -0.3370 6.7323 -2.9351 13 6 1.0756 6.4971 -2.7673 14 6 2.0588 7.4828 -2.9595 15 1 3.0016 7.4141 -2.4372 16 6 1.8155 8.5560 -3.8299 17 7 0.8798 8.4624 -4.7368 18 14 2.8293 10.1189 -3.6917 19 1 2.3785 11.0937 -4.7173 20 1 2.6518 10.7063 -2.3395 21 1 4.2633 9.7994 -3.9083 22 6 4.0987 2.7212 -1.2549 23 6 3.7510 1.9673 0.0515 24 1 4.0262 2.5635 0.9217 25 7 4.4350 0.6677 0.0846 26 6 5.8511 0.8086 -0.2797 27 6 4.2909 0.0302 1.4002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.8190 2.9210 -1.2025 32 1 1.7192 1.6724 -2.1174 33 1 -2.1778 5.6659 -2.7935 34 1 -0.7399 7.6921 -3.2229 35 1 0.3938 7.6304 -4.8481 36 1 4.3955 2.0192 -2.0342 37 1 4.8904 3.4487 -1.0759 38 1 6.3338 1.5087 0.4022 39 1 6.3422 -0.1621 -0.2117 40 1 5.9281 1.1840 -1.3002 41 1 3.2325 -0.0874 1.6330 42 1 4.7704 -0.9485 1.3843 43 1 4.7629 0.6537 2.1597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867019489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = 11.977333 kcal Electronic energy + Delta-G solvation = -25649.454772 eV Core-core repulsion = 22140.851442 eV Total energy + Delta-G solvation = -3508.603330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.57905 -37.71397 -36.43553 -35.20574 -33.04444 -30.61404 -29.63793 -28.81880 -28.51834 -27.21146 -25.99933 -24.01807 -23.02394 -22.18304 -20.23439 -19.68200 -19.00475 -17.30656 -16.86024 -16.58417 -15.72019 -15.30658 -15.09343 -14.63294 -14.43354 -14.20747 -14.09632 -13.89342 -13.54279 -13.43355 -13.19305 -13.12105 -12.64141 -12.54258 -12.34143 -12.14637 -11.88305 -11.79344 -11.68755 -11.47762 -11.38157 -11.12735 -11.02854 -10.95030 -10.68299 -10.45673 -10.03838 -9.80800 -9.48624 -9.14015 -8.65024 -8.46888 -8.11261 -7.80387 -7.41487 -7.36121 -7.35189 -4.63880 1.70270 1.99165 2.64588 2.87802 3.03951 3.08547 3.29882 3.47446 3.60304 3.62339 3.88353 3.98602 4.24848 4.47462 4.64017 5.05372 5.07766 5.11258 5.20003 5.21913 5.28051 5.33376 5.35545 5.50936 5.57320 5.75759 5.79014 5.80460 5.85447 5.93443 5.97426 6.00999 6.07430 6.18124 6.51908 6.85959 6.93701 6.95782 6.99688 7.21865 7.28045 7.74023 7.86364 8.34033 8.43029 8.65667 9.41843 9.74609 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003692 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.351198 B = 7582.439131 C = 9059.495332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.173 6.173 3 C -0.072 4.072 4 H 0.093 0.907 5 C 0.113 3.887 6 N -0.636 5.636 7 C 0.622 3.378 8 O -0.556 6.556 9 C -0.434 4.434 10 S -0.021 6.021 11 C -0.205 4.205 12 C -0.141 4.141 13 C 0.115 3.885 14 C -0.422 4.422 15 H 0.105 0.895 16 C 0.029 3.971 17 N -0.776 5.776 18 Si 1.074 2.926 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.269 1.269 22 C 0.119 3.881 23 C 0.090 3.910 24 H 0.062 0.938 25 N -0.527 5.527 26 C 0.019 3.981 27 C 0.009 3.991 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.301 0.699 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -12.368 8.898 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.054 5.946 3 C -0.203 4.203 4 H 0.111 0.889 5 C -0.015 4.015 6 N -0.372 5.372 7 C 0.422 3.578 8 O -0.439 6.439 9 C -0.553 4.553 10 S 0.235 5.765 11 C -0.338 4.338 12 C -0.174 4.174 13 C 0.104 3.896 14 C -0.452 4.452 15 H 0.123 0.877 16 C -0.195 4.195 17 N -0.399 5.399 18 Si 0.896 3.104 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.194 1.194 22 C -0.005 4.005 23 C -0.021 4.021 24 H 0.080 0.920 25 N -0.252 5.252 26 C -0.128 4.128 27 C -0.140 4.140 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.646 -12.987 8.039 15.362 hybrid contribution -0.725 1.264 0.916 1.721 sum 0.921 -11.723 8.954 14.780 Atomic orbital electron populations 1.23656 0.98504 1.05845 1.04944 1.87137 1.02602 1.07980 1.96859 1.24357 0.98832 0.95503 1.01603 0.88873 1.22878 0.92918 0.91696 0.94008 1.48727 1.06388 1.14432 1.67686 1.16499 0.88178 0.77434 0.75710 1.90692 1.40230 1.57908 1.55048 1.22304 0.91476 0.97008 1.44508 1.82767 1.00433 1.15787 1.77525 1.25370 1.01847 0.98634 1.07938 1.21529 0.93909 0.98596 1.03317 1.17869 0.90998 0.90586 0.90099 1.20880 1.02672 1.02279 1.19398 0.87743 1.27534 0.96474 1.03737 0.91801 1.70450 1.14211 1.31429 1.23833 0.83493 0.76059 0.73095 0.77746 1.19574 1.19629 1.19396 1.22240 0.88936 0.95077 0.94243 1.22500 0.91135 0.89749 0.98712 0.92048 1.62000 1.13021 1.20647 1.29507 1.22463 0.87676 1.01282 1.01425 1.22861 1.04413 0.98579 0.88168 0.88573 0.90991 0.90507 0.88887 0.90477 0.84443 0.85468 0.88503 0.90744 0.90182 0.95562 0.91271 0.90750 0.88407 0.91344 0.96150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.62 101.05 1.07 -0.55 16 2 S -0.17 -2.08 17.09 -107.50 -1.84 -3.91 16 3 C -0.07 -1.00 3.43 -25.33 -0.09 -1.09 16 4 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.11 1.88 5.75 -2.41 -0.01 1.86 16 6 N -0.64 -12.70 3.31 -170.75 -0.57 -13.27 16 7 C 0.62 15.48 7.84 -13.05 -0.10 15.38 16 8 O -0.56 -15.50 14.88 5.14 0.08 -15.42 16 9 C -0.43 -10.91 6.45 -35.88 -0.23 -11.14 16 10 S -0.02 -0.44 18.78 -107.50 -2.02 -2.46 16 11 C -0.20 -4.27 11.07 28.86 0.32 -3.95 16 12 C -0.14 -3.31 8.16 -39.12 -0.32 -3.63 16 13 C 0.12 3.02 5.37 -106.21 -0.57 2.45 16 14 C -0.42 -11.35 8.33 -37.94 -0.32 -11.67 16 15 H 0.10 2.96 6.37 -52.48 -0.33 2.63 16 16 C 0.03 0.71 5.24 -17.28 -0.09 0.62 16 17 N -0.78 -19.62 12.60 55.57 0.70 -18.92 16 18 Si 1.07 21.24 29.98 -169.99 -5.10 16.15 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 22 C 0.12 1.97 5.43 -2.19 -0.01 1.96 16 23 C 0.09 1.23 2.86 -66.09 -0.19 1.04 16 24 H 0.06 0.85 8.09 -51.92 -0.42 0.43 16 25 N -0.53 -6.32 3.81 -241.21 -0.92 -7.24 16 26 C 0.02 0.20 9.05 60.06 0.54 0.75 16 27 C 0.01 0.09 8.75 60.07 0.53 0.62 16 28 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.09 1.64 3.98 -23.18 -0.09 1.55 16 32 H 0.08 1.29 7.82 -51.93 -0.41 0.88 16 33 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.13 2.94 6.89 -52.49 -0.36 2.58 16 35 H 0.30 7.73 6.15 -40.82 -0.25 7.48 16 36 H 0.07 1.19 6.89 -51.92 -0.36 0.84 16 37 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.63 8.11 -51.93 -0.42 0.20 16 40 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 41 H 0.10 1.04 5.18 -33.76 -0.17 0.86 16 42 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -29.29 358.83 -9.46 -38.74 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.73 Total: 8.28 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.53 Total: -7.35 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.78 Total: -39.43 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.10 Total: 16.15 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -3.86 Total: -6.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.29 -9.46 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867019489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.720 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds