Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47423 * 269.99626 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99753 * 3 2 1 6 6 H 1.48504 * 109.47281 * 149.99389 * 3 2 1 7 7 C 1.38948 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99699 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00684 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00289 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00177 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47513 * 175.21803 * 12 10 9 14 14 C 1.34225 * 117.00008 * 180.99414 * 13 12 10 15 15 O 1.20824 * 120.00312 * 354.85607 * 14 13 12 16 16 C 1.50702 * 119.99780 * 174.85055 * 14 13 12 17 17 C 1.50702 * 115.55171 * 55.12626 * 16 14 13 18 18 C 1.36618 * 120.92366 * 245.61346 * 17 16 14 19 19 C 1.39288 * 119.93037 * 179.73415 * 18 17 16 20 20 N 1.31109 * 121.75348 * 0.57862 * 19 18 17 21 21 C 1.33650 * 121.31627 * 359.69546 * 20 19 18 22 22 C 1.40607 * 121.07717 * 180.02562 * 21 20 19 23 23 C 1.36064 * 119.74964 * 179.97438 * 22 21 20 24 24 C 1.39363 * 121.07200 * 0.02562 * 23 22 21 25 25 C 1.36131 * 120.87318 * 359.97438 * 24 23 22 26 26 C 1.40436 * 119.61340 * 0.03872 * 25 24 23 27 27 C 1.52999 * 117.49996 * 269.45450 * 16 14 13 28 28 C 1.53006 * 117.49943 * 200.79409 * 16 14 13 29 29 H 0.96994 * 120.00149 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99525 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46952 * 55.21872 * 12 10 9 32 32 H 1.09001 * 109.47084 * 295.22082 * 12 10 9 33 33 H 1.07991 * 120.02985 * 0.02562 * 18 17 16 34 34 H 1.08007 * 119.11862 * 180.25482 * 19 18 17 35 35 H 1.08008 * 120.12470 * 0.02562 * 22 21 20 36 36 H 1.08002 * 119.46508 * 180.02562 * 23 22 21 37 37 H 1.08002 * 119.56250 * 179.97438 * 24 23 22 38 38 H 1.08001 * 120.19404 * 180.02562 * 25 24 23 39 39 H 1.09003 * 117.49585 * 0.02562 * 27 16 14 40 40 H 1.09004 * 117.50216 * 145.01875 * 27 16 14 41 41 H 1.08995 * 117.49821 * 214.97995 * 28 16 14 42 42 H 1.09001 * 117.49388 * 0.02562 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 8 2.1833 -5.9643 -0.1109 14 6 1.6683 -7.2034 -0.1456 15 8 0.4816 -7.3690 0.0097 16 6 2.5704 -8.3879 -0.3782 17 6 3.7299 -8.5193 0.5754 18 6 5.0175 -8.3932 0.1366 19 6 6.0734 -8.5129 1.0371 20 7 5.8711 -8.7571 2.3092 21 6 4.6366 -8.8968 2.8020 22 6 4.4253 -9.1582 4.1673 23 6 3.1568 -9.2950 4.6401 24 6 2.0569 -9.1809 3.7921 25 6 2.2215 -8.9283 2.4645 26 6 3.5166 -8.7815 1.9415 27 6 2.7916 -8.8341 -1.8249 28 6 1.9248 -9.6784 -0.8873 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.5548 -4.8850 -0.8422 32 1 0.6826 -4.9580 0.9317 33 1 5.2162 -8.1963 -0.9064 34 1 7.0861 -8.4068 0.6768 35 1 5.2667 -9.2492 4.8383 36 1 2.9998 -9.4953 5.6897 37 1 1.0606 -9.2943 4.1933 38 1 1.3613 -8.8416 1.8173 39 1 2.2849 -8.2705 -2.6084 40 1 3.7756 -9.2229 -2.0869 41 1 2.3390 -10.6222 -0.5327 42 1 0.8477 -9.6703 -1.0543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869808189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -54.518636 kcal Electronic energy + Delta-G solvation = -28635.270287 eV Core-core repulsion = 24545.586654 eV Total energy + Delta-G solvation = -4089.683633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43843 -41.51267 -40.17307 -38.70514 -37.99466 -37.32959 -36.07990 -33.96239 -33.46231 -31.57371 -30.97046 -30.33905 -27.18445 -26.21287 -25.03702 -24.62467 -23.41751 -23.10272 -21.51377 -21.02263 -20.12444 -19.47088 -18.71735 -18.21904 -18.08699 -17.89751 -17.46739 -17.03026 -16.57093 -16.05200 -15.86809 -15.69988 -15.42352 -15.36778 -15.18715 -14.93105 -14.73438 -14.20234 -14.08073 -13.94368 -13.60019 -13.46343 -12.96527 -12.80471 -12.65425 -12.54735 -12.51368 -12.47092 -12.21488 -12.13955 -12.05308 -11.96576 -11.61525 -11.42746 -11.15235 -10.56881 -10.56527 -10.15693 -9.78087 -9.27606 -8.55729 -6.06709 -0.68259 -0.18910 0.78252 0.93304 1.23234 1.33644 1.41936 1.54898 1.82147 1.94431 2.26428 2.50171 2.92106 3.04072 3.09326 3.11506 3.34864 3.47670 3.57684 3.66358 3.72883 3.88734 3.92006 3.95145 4.05410 4.15636 4.19242 4.25523 4.40692 4.45960 4.52966 4.60987 4.72344 4.82461 4.96290 5.02471 5.05203 5.08884 5.18267 5.33647 5.35430 5.44880 5.52825 5.84665 5.86448 6.38861 6.50468 6.86587 6.99032 7.34767 7.88507 8.61305 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002881 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.805447 B = 9715.298028 C =10192.169272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.555 5.555 10 C 0.435 3.565 11 O -0.617 6.617 12 C 0.070 3.930 13 O -0.338 6.338 14 C 0.501 3.499 15 O -0.517 6.517 16 C -0.130 4.130 17 C 0.001 3.999 18 C -0.157 4.157 19 C 0.130 3.870 20 N -0.497 5.497 21 C 0.101 3.899 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.113 4.113 29 H 0.282 0.718 30 H 0.400 0.600 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -22.534 1.093 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.193 5.193 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.007 4.007 13 O -0.253 6.253 14 C 0.344 3.656 15 O -0.406 6.406 16 C -0.131 4.131 17 C -0.007 4.007 18 C -0.176 4.176 19 C -0.042 4.042 20 N -0.205 5.205 21 C -0.020 4.020 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.113 4.113 27 C -0.160 4.160 28 C -0.149 4.149 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.211 0.789 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.147 0.853 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.362 -22.483 1.837 22.975 hybrid contribution -1.149 1.356 -0.429 1.828 sum 3.213 -21.127 1.408 21.416 Atomic orbital electron populations 1.69668 1.06938 1.29820 1.48950 1.26125 0.96589 1.02549 0.95498 0.84862 0.77866 0.76307 0.78919 1.19233 1.19287 1.19677 1.19717 0.92921 0.83367 1.50871 0.89878 1.41720 1.09527 1.04125 1.63881 1.20043 0.88077 0.85331 0.84373 1.90533 1.15451 1.87649 1.56759 1.22573 0.90311 0.82712 1.05125 1.86568 1.40869 1.15123 1.82746 1.22819 0.87346 0.83535 0.71855 1.90631 1.17516 1.86341 1.46154 1.19510 0.98496 0.94099 1.00978 1.19011 0.93574 0.96514 0.91620 1.22123 0.91896 1.00061 1.03528 1.23527 1.01160 0.91763 0.87788 1.68052 1.22872 1.13358 1.16214 1.19247 0.88167 0.99216 0.95354 1.21079 0.99019 1.00034 0.92583 1.21297 0.91245 0.97175 1.01686 1.21311 1.00826 0.98168 0.92937 1.21219 0.95382 0.99760 0.97152 1.18895 0.95397 1.02904 0.94056 1.23494 1.04215 1.00306 0.88020 1.23368 1.01028 0.91771 0.98762 0.90869 0.76550 0.87120 0.88040 0.81517 0.78935 0.83475 0.81876 0.83046 0.85702 0.86838 0.84069 0.85338 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.54 13.05 21.66 0.28 -48.26 16 2 C -0.01 -0.35 5.50 84.92 0.47 0.12 16 3 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.87 5.29 -306.99 -1.62 -30.49 16 10 C 0.44 21.81 7.86 87.66 0.69 22.49 16 11 O -0.62 -36.06 16.09 15.67 0.25 -35.81 16 12 C 0.07 2.73 5.96 71.23 0.42 3.16 16 13 O -0.34 -13.21 9.75 -45.03 -0.44 -13.64 16 14 C 0.50 16.00 6.20 71.24 0.44 16.44 16 15 O -0.52 -17.26 15.62 21.97 0.34 -16.91 16 16 C -0.13 -3.08 1.36 -53.67 -0.07 -3.16 16 17 C 0.00 0.03 5.13 -19.63 -0.10 -0.07 16 18 C -0.16 -3.50 9.25 22.14 0.20 -3.29 16 19 C 0.13 2.95 11.14 85.05 0.95 3.90 16 20 N -0.50 -13.85 10.34 -188.64 -1.95 -15.80 16 21 C 0.10 2.87 6.60 40.30 0.27 3.13 16 22 C -0.11 -2.54 9.98 22.34 0.22 -2.31 16 23 C -0.09 -1.81 9.94 22.03 0.22 -1.59 16 24 C -0.11 -2.41 9.95 22.05 0.22 -2.19 16 25 C -0.12 -3.02 9.13 22.31 0.20 -2.81 16 26 C -0.11 -3.12 5.73 -21.28 -0.12 -3.24 16 27 C -0.12 -1.93 9.46 30.62 0.29 -1.64 16 28 C -0.11 -1.83 9.73 30.62 0.30 -1.53 16 29 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 31 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 32 H 0.10 3.65 8.11 -2.39 -0.02 3.63 16 33 H 0.17 2.69 7.09 -2.92 -0.02 2.67 16 34 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.13 3.31 6.01 -2.91 -0.02 3.29 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.14 1.44 7.20 -2.39 -0.02 1.42 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.12 1.90 7.83 -2.39 -0.02 1.88 16 Total: -1.00 -76.65 369.88 4.66 -71.99 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.35 Total: 35.79 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.41 Total: 8.95 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.29 Total: -94.56 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: 0.16 Total: -66.36 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -76.65 4.66 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869808189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.474 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds