Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.07996 * 120.00370 * 239.99526 * 9 7 6 11 11 C 1.37882 * 119.99790 * 59.99908 * 9 7 6 12 12 N 1.31508 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47081 * 59.99441 * 13 11 9 15 15 H 1.48496 * 109.47319 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46734 * 299.99914 * 13 11 9 17 17 O 1.45198 * 109.46884 * 294.99550 * 7 6 4 18 18 C 1.34733 * 117.00021 * 150.00190 * 17 7 6 19 19 O 1.21491 * 119.99646 * 359.97438 * 18 17 7 20 20 C 1.47603 * 120.00139 * 180.02562 * 18 17 7 21 21 C 1.39701 * 120.10516 * 359.72354 * 20 18 17 22 22 C 1.37865 * 119.97865 * 179.74279 * 21 20 18 23 23 C 1.38546 * 120.18552 * 0.53223 * 22 21 20 24 24 F 1.35103 * 119.89828 * 179.71666 * 23 22 21 25 25 C 1.39090 * 120.20438 * 359.74533 * 23 22 21 26 26 O 1.35966 * 119.99059 * 179.97438 * 25 23 22 27 27 C 1.42901 * 117.00378 * 179.97438 * 26 25 23 28 28 C 1.38295 * 120.02424 * 359.97438 * 25 23 22 29 29 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 32 32 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 33 33 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 34 34 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 35 35 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 36 36 H 0.97002 * 120.00075 * 180.02562 * 12 11 9 37 37 H 1.08001 * 120.01012 * 0.02562 * 21 20 18 38 38 H 1.08000 * 119.91206 * 180.27943 * 22 21 20 39 39 H 1.09000 * 109.47184 * 180.02562 * 27 26 25 40 40 H 1.09000 * 109.46656 * 299.99708 * 27 26 25 41 41 H 1.08998 * 109.46900 * 59.99537 * 27 26 25 42 42 H 1.08000 * 120.09903 * 180.02562 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7405 5.1964 0.8344 12 7 4.9672 4.8936 1.8541 13 14 6.4535 6.9162 0.6813 14 1 5.9896 7.5332 -0.5873 15 1 6.0008 7.7436 1.8282 16 1 7.9365 6.8389 0.6808 17 8 5.9016 2.2540 1.2415 18 6 7.0505 1.5517 1.1961 19 8 7.6569 1.4461 0.1487 20 6 7.5718 0.9096 2.4187 21 6 6.8788 1.0336 3.6253 22 6 7.3653 0.4284 4.7645 23 6 8.5466 -0.2941 4.7192 24 9 9.0210 -0.8800 5.8404 25 6 9.2459 -0.4176 3.5233 26 8 10.4050 -1.1273 3.4839 27 6 11.0705 -1.2134 2.2223 28 6 8.7626 0.1811 2.3741 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5844 3.4694 0.8911 35 1 3.5849 3.4699 -0.8888 36 1 4.7673 5.5632 2.5269 37 1 5.9597 1.5995 3.6647 38 1 6.8262 0.5212 5.6957 39 1 11.9788 -1.8061 2.3303 40 1 10.4114 -1.6885 1.4956 41 1 11.3284 -0.2118 1.8784 42 1 9.3044 0.0856 1.4447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870618358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -247.767641 kcal Electronic energy + Delta-G solvation = -29885.390945 eV Core-core repulsion = 25324.265430 eV Total energy + Delta-G solvation = -4561.125515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.00505 -41.63499 -41.31380 -40.49090 -38.47423 -37.78072 -37.08110 -35.06831 -32.92762 -32.31221 -31.85873 -31.37655 -28.49913 -28.14274 -25.63754 -24.54970 -23.63299 -23.32645 -22.06228 -21.49819 -19.73528 -19.07956 -18.73141 -18.24300 -17.91824 -17.72493 -17.46726 -17.31316 -17.10105 -16.97360 -16.45473 -16.21219 -16.16105 -15.61625 -15.36683 -15.25013 -14.68512 -14.48895 -14.15486 -13.93183 -13.71823 -13.65197 -13.48938 -13.35823 -12.97744 -12.85383 -12.80998 -12.69629 -12.60818 -12.45509 -12.39836 -12.22095 -12.10272 -11.55686 -11.47518 -11.42864 -11.33090 -10.79816 -10.70532 -10.17452 -9.44035 -8.23349 -6.48812 -0.56187 0.06720 1.29539 1.42880 1.45541 1.52724 1.59488 1.81386 1.96751 2.12805 2.38106 2.55925 2.95487 3.08615 3.55526 3.77623 3.82722 3.96076 3.98282 4.02096 4.14383 4.29610 4.30023 4.35846 4.36442 4.47114 4.57229 4.60632 4.66854 4.69775 4.88051 4.93169 4.94716 5.06520 5.14932 5.20760 5.31210 5.41418 5.51118 5.64018 5.93381 6.00039 6.06694 6.56993 6.86349 7.09912 7.31141 8.78732 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008073 B = 0.004157 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.597811 B = 6733.671251 C = 8781.360469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.543 6.543 6 C -0.094 4.094 7 C 0.230 3.770 8 H 0.020 0.980 9 C -0.576 4.576 10 H 0.055 0.945 11 C 0.053 3.947 12 N -0.870 5.870 13 Si 0.955 3.045 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.284 1.284 17 O -0.329 6.329 18 C 0.497 3.503 19 O -0.556 6.556 20 C -0.103 4.103 21 C -0.068 4.068 22 C -0.111 4.111 23 C 0.091 3.909 24 F -0.128 7.128 25 C 0.083 3.917 26 O -0.318 6.318 27 C 0.015 3.985 28 C -0.128 4.128 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.274 0.726 37 H 0.149 0.851 38 H 0.185 0.815 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -9.079 4.397 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.280 6.280 4 C 0.310 3.690 5 O -0.434 6.434 6 C -0.131 4.131 7 C 0.177 3.823 8 H 0.038 0.962 9 C -0.613 4.613 10 H 0.073 0.927 11 C -0.154 4.154 12 N -0.505 5.505 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.210 1.210 17 O -0.244 6.244 18 C 0.344 3.656 19 O -0.450 6.450 20 C -0.105 4.105 21 C -0.086 4.086 22 C -0.129 4.129 23 C 0.071 3.929 24 F -0.106 7.106 25 C 0.037 3.963 26 O -0.232 6.232 27 C -0.079 4.079 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.202 0.798 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.014 -9.454 4.437 10.492 hybrid contribution 0.714 0.704 -0.603 1.170 sum -0.300 -8.749 3.834 9.557 Atomic orbital electron populations 1.21805 0.89857 1.04415 1.03766 1.23288 0.97480 0.79680 1.02085 1.86547 1.24007 1.33511 1.83939 1.24541 0.80432 0.93402 0.70609 1.90589 1.61179 1.44312 1.47298 1.21662 0.94691 0.89161 1.07611 1.20025 0.89878 0.91635 0.80736 0.96160 1.21403 1.33618 0.95372 1.10891 0.92718 1.25636 0.93871 1.01962 0.93911 1.69899 1.34013 1.35711 1.10861 0.85679 0.78428 0.79368 0.78604 1.18822 1.19578 1.20963 1.86633 1.36517 1.59492 1.41731 1.21326 0.80340 0.75724 0.88232 1.90656 1.59683 1.61112 1.33597 1.19279 0.97053 1.01425 0.92707 1.21373 0.99963 0.97092 0.90177 1.21225 0.94076 0.96698 1.00889 1.17320 0.95055 0.99739 0.80745 1.91504 1.88026 1.82049 1.49022 1.18747 0.88816 0.96063 0.92682 1.86110 1.32989 1.67898 1.36205 1.23460 0.98109 1.03373 0.82984 1.21186 0.96256 0.98613 0.98606 0.91126 0.87898 0.91288 0.91743 0.91958 0.85013 0.86226 0.91592 0.83341 0.79808 0.84748 0.91940 0.92033 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.33 6.19 71.98 0.45 1.77 16 3 O -0.36 -12.83 10.22 -51.47 -0.53 -13.36 16 4 C 0.46 19.63 7.84 71.24 0.56 20.19 16 5 O -0.54 -25.72 15.17 26.93 0.41 -25.31 16 6 C -0.09 -4.20 5.23 29.85 0.16 -4.04 16 7 C 0.23 11.93 1.65 29.85 0.05 11.98 16 8 H 0.02 1.13 6.97 -2.39 -0.02 1.11 16 9 C -0.58 -31.05 8.92 25.60 0.23 -30.82 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.05 2.67 5.25 84.66 0.44 3.11 16 12 N -0.87 -43.84 10.93 21.45 0.23 -43.61 16 13 Si 0.95 40.42 29.54 68.60 2.03 42.45 16 14 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 O -0.33 -16.93 7.77 -51.43 -0.40 -17.33 16 18 C 0.50 24.53 7.86 70.29 0.55 25.08 16 19 O -0.56 -29.83 15.60 19.87 0.31 -29.52 16 20 C -0.10 -4.09 5.87 -20.11 -0.12 -4.21 16 21 C -0.07 -2.28 9.61 22.54 0.22 -2.06 16 22 C -0.11 -2.95 10.00 22.25 0.22 -2.73 16 23 C 0.09 2.61 7.32 22.55 0.16 2.78 16 24 F -0.13 -3.53 17.10 44.97 0.77 -2.76 16 25 C 0.08 2.53 6.69 22.49 0.15 2.68 16 26 O -0.32 -8.62 10.36 -93.17 -0.96 -9.58 16 27 C 0.01 0.29 9.81 113.37 1.11 1.40 16 28 C -0.13 -4.37 8.58 22.63 0.19 -4.18 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 34 H 0.13 6.19 6.22 -2.39 -0.01 6.17 16 35 H 0.12 4.86 8.14 -2.39 -0.02 4.84 16 36 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 37 H 0.15 5.18 7.60 -2.91 -0.02 5.16 16 38 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 41 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 42 H 0.15 5.02 5.88 -2.91 -0.02 5.00 16 Total: -1.00 -67.59 372.26 8.04 -59.56 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.06 Total: 20.39 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 5.12 Total: 19.07 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.23 Total: -43.61 kcal Atomic # 8 Polarization: -93.93 SS G_CDS: -1.17 Total: -95.10 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.77 Total: -2.76 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -67.59 8.04 -59.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.210 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds