Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34778 * 125.64927 * 178.90901 * 5 4 2 7 7 O 1.21285 * 119.99851 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00157 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.47450 * 179.97438 * 8 6 5 10 10 C 1.38246 * 119.97956 * 264.72463 * 9 8 6 11 11 C 1.38190 * 120.03354 * 179.72196 * 10 9 8 12 12 C 1.38489 * 120.00471 * 0.54965 * 11 10 9 13 13 F 1.35096 * 120.02031 * 179.74976 * 12 11 10 14 14 C 1.38419 * 119.95856 * 359.72342 * 12 11 10 15 15 C 1.38333 * 119.96274 * 0.02562 * 14 12 11 16 16 Cl 1.73603 * 120.00094 * 179.97438 * 15 14 12 17 17 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 18 18 C 1.54907 * 104.83142 * 24.13000 * 17 5 4 19 19 H 1.09000 * 111.00135 * 81.06852 * 18 17 5 20 20 N 1.46499 * 111.00277 * 204.91089 * 18 17 5 21 21 C 1.36936 * 120.00696 * 267.20195 * 20 18 17 22 22 H 1.08006 * 119.99720 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00309 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00036 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00042 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47252 * 89.99988 * 25 23 21 27 27 H 1.48500 * 109.47129 * 209.99962 * 25 23 21 28 28 H 1.48491 * 109.47027 * 329.99869 * 25 23 21 29 29 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 30 30 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 31 31 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 32 32 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 33 33 H 1.08999 * 109.88321 * 100.02034 * 4 2 1 34 34 H 1.09011 * 109.46713 * 299.99192 * 8 6 5 35 35 H 1.08999 * 109.47372 * 59.99337 * 8 6 5 36 36 H 1.07995 * 119.97939 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.99268 * 180.27338 * 11 10 9 38 38 H 1.08001 * 120.01447 * 179.97438 * 14 12 11 39 39 H 1.09002 * 110.36463 * 142.97358 * 17 5 4 40 40 H 1.09007 * 110.36631 * 265.28998 * 17 5 4 41 41 H 0.97003 * 119.99808 * 87.19509 * 20 18 17 42 42 H 0.97002 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9916 -2.3820 -1.4934 7 8 3.7178 -2.5538 -2.6624 8 6 5.1665 -3.1002 -0.8813 9 6 5.8277 -3.9626 -1.9255 10 6 5.4930 -5.2999 -2.0299 11 6 6.0944 -6.0904 -2.9907 12 6 7.0411 -5.5458 -3.8422 13 9 7.6329 -6.3196 -4.7783 14 6 7.3803 -4.2082 -3.7339 15 6 6.7735 -3.4171 -2.7750 16 17 7.1986 -1.7395 -2.6379 17 6 3.4633 -1.2508 0.6854 18 6 2.0790 -0.7974 1.2124 19 1 1.4452 -1.6560 1.4347 20 7 2.2214 0.0656 2.3876 21 6 2.1868 -0.4774 3.6442 22 1 2.0540 -1.5420 3.7690 23 6 2.3223 0.3402 4.7577 24 7 2.2885 -0.1817 5.9654 25 14 2.5512 2.1816 4.5419 26 1 1.2236 2.8467 4.5236 27 1 3.3569 2.7157 5.6693 28 1 3.2551 2.4462 3.2615 29 1 -0.3633 -1.0272 0.0302 30 1 -0.3633 0.5398 0.8744 31 1 -0.3633 0.4874 -0.9047 32 1 1.3130 -1.4731 -1.5801 33 1 2.3741 -0.0989 -1.9979 34 1 5.8834 -2.3699 -0.5058 35 1 4.8212 -3.7265 -0.0588 36 1 4.7583 -5.7260 -1.3629 37 1 5.8292 -7.1340 -3.0746 38 1 8.1188 -3.7827 -4.3972 39 1 3.7961 -2.1446 1.2133 40 1 4.1932 -0.4490 0.7977 41 1 2.3404 1.0217 2.2756 42 1 2.3835 0.3897 6.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939069522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -48.409473 kcal Electronic energy + Delta-G solvation = -26727.199289 eV Core-core repulsion = 22647.720508 eV Total energy + Delta-G solvation = -4079.478780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.23308 -40.32513 -39.27994 -37.60652 -36.70744 -34.26243 -33.11797 -32.37328 -31.27814 -31.11086 -28.16242 -27.92117 -25.79465 -23.83814 -23.48270 -22.30933 -21.35321 -20.21193 -19.18433 -18.12069 -17.67323 -17.10661 -16.96559 -16.34109 -15.93597 -15.78446 -15.22090 -14.83967 -14.78133 -14.33371 -14.11658 -13.87371 -13.57493 -13.36179 -13.29544 -13.19028 -12.86208 -12.67357 -12.31989 -12.19084 -12.00098 -11.82616 -11.61582 -11.52959 -11.46428 -11.21914 -11.13593 -10.84469 -10.70303 -10.43905 -10.07269 -9.87559 -9.70836 -9.29132 -9.11370 -8.85689 -8.46390 -7.46073 -5.90809 -3.29123 0.66278 0.76028 1.78332 2.71410 2.93104 3.27958 3.28567 3.31005 3.37762 3.89769 4.28253 4.37979 4.46368 4.53232 4.55799 4.78991 4.94441 4.95879 5.04490 5.10587 5.20579 5.35779 5.37248 5.46945 5.56566 5.58703 5.63482 5.66783 5.72624 5.75319 5.81486 5.97385 6.04119 6.06627 6.22063 6.28014 6.37339 6.39985 6.46266 6.67681 7.65517 7.82778 8.24477 8.27842 9.03977 9.76261 9.94112 11.26707 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002639 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.591407 B =10606.996037 C =10937.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.118 3.882 5 N -0.613 5.613 6 C 0.532 3.468 7 O -0.543 6.543 8 C -0.106 4.106 9 C -0.060 4.060 10 C -0.065 4.065 11 C -0.147 4.147 12 C 0.108 3.892 13 F -0.135 7.135 14 C -0.147 4.147 15 C 0.007 3.993 16 Cl -0.052 7.052 17 C 0.070 3.930 18 C 0.183 3.817 19 H 0.078 0.922 20 N -0.734 5.734 21 C -0.254 4.254 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.364 0.636 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 -7.623 -17.872 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.347 5.347 6 C 0.321 3.679 7 O -0.421 6.421 8 C -0.145 4.145 9 C -0.062 4.062 10 C -0.084 4.084 11 C -0.166 4.166 12 C 0.089 3.911 13 F -0.114 7.114 14 C -0.166 4.166 15 C -0.020 4.020 16 Cl -0.022 7.022 17 C -0.056 4.056 18 C 0.071 3.929 19 H 0.096 0.904 20 N -0.375 5.375 21 C -0.383 4.383 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.575 5.575 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.198 0.802 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.081 -7.779 -18.311 21.118 hybrid contribution 0.486 1.432 -0.101 1.516 sum 7.568 -6.347 -18.412 20.894 Atomic orbital electron populations 1.21669 0.93715 1.02105 1.01754 1.22565 0.96730 0.99672 0.94891 0.90056 1.21949 0.87465 0.94378 0.96691 1.48470 1.29888 1.43999 1.12341 1.19905 0.83117 0.78971 0.85949 1.90702 1.70921 1.64244 1.16193 1.20716 0.96825 0.99480 0.97528 1.19275 0.95794 0.94284 0.96814 1.20869 0.98179 0.91943 0.97373 1.21200 0.97441 1.01650 0.96277 1.17428 0.95498 0.88557 0.89664 1.91519 1.82432 1.74419 1.62983 1.20896 1.03054 0.92346 1.00316 1.20445 0.97998 0.86218 0.97386 1.98394 1.92176 1.14551 1.97124 1.23493 1.02268 1.01187 0.78666 1.21330 0.92057 0.93723 0.85777 0.90402 1.42651 1.87823 1.05152 1.01862 1.19052 1.43355 0.94761 0.81151 0.88981 1.24673 1.01366 0.97472 0.95061 1.69692 1.56124 1.34614 0.97041 0.86590 0.78000 0.87029 0.77105 1.20936 1.21644 1.20241 0.92524 0.91499 0.93115 0.91455 0.91985 0.87209 0.87047 0.83854 0.83974 0.83695 0.90654 0.91238 0.80231 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.13 37.16 0.34 -1.37 16 2 C -0.12 -1.65 3.19 -88.79 -0.28 -1.93 16 3 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 4 C 0.12 1.61 6.46 -3.07 -0.02 1.59 16 5 N -0.61 -8.74 3.33 -170.52 -0.57 -9.30 16 6 C 0.53 7.66 7.84 -10.99 -0.09 7.57 16 7 O -0.54 -9.34 16.36 5.55 0.09 -9.25 16 8 C -0.11 -1.21 4.35 -29.04 -0.13 -1.33 16 9 C -0.06 -0.68 4.38 -104.58 -0.46 -1.14 16 10 C -0.07 -0.63 9.68 -39.60 -0.38 -1.01 16 11 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 12 C 0.11 1.10 7.30 -39.42 -0.29 0.81 16 13 F -0.13 -1.40 17.27 2.25 0.04 -1.36 16 14 C -0.15 -1.53 9.81 -39.48 -0.39 -1.91 16 15 C 0.01 0.07 6.31 -39.51 -0.25 -0.17 16 16 Cl -0.05 -0.60 27.40 -51.86 -1.42 -2.02 16 17 C 0.07 1.04 6.39 -2.53 -0.02 1.02 16 18 C 0.18 3.05 3.16 -65.79 -0.21 2.85 16 19 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 20 N -0.73 -15.33 5.05 -51.36 -0.26 -15.59 16 21 C -0.25 -6.48 10.44 -15.06 -0.16 -6.64 16 22 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -27.51 13.97 55.49 0.78 -26.73 16 25 Si 0.88 20.65 27.74 -169.99 -4.71 15.93 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.90 7.82 -51.92 -0.41 0.50 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.20 7.12 -51.92 -0.37 0.83 16 35 H 0.11 1.05 7.75 -51.93 -0.40 0.65 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 40 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 41 H 0.36 7.56 5.63 -40.82 -0.23 7.33 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -30.66 368.84 -8.91 -39.58 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.60 Total: 6.38 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.82 Total: -3.20 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.05 Total: -51.62 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.93 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.66 -8.91 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939069522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.832 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds