Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34778 * 125.64927 * 178.90901 * 5 4 2 7 7 O 1.21285 * 119.99851 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00157 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.47450 * 179.97438 * 8 6 5 10 10 C 1.38246 * 119.97956 * 264.72463 * 9 8 6 11 11 C 1.38190 * 120.03354 * 179.72196 * 10 9 8 12 12 C 1.38489 * 120.00471 * 0.54965 * 11 10 9 13 13 F 1.35096 * 120.02031 * 179.74976 * 12 11 10 14 14 C 1.38419 * 119.95856 * 359.72342 * 12 11 10 15 15 C 1.38333 * 119.96274 * 0.02562 * 14 12 11 16 16 Cl 1.73603 * 120.00094 * 179.97438 * 15 14 12 17 17 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 18 18 C 1.54907 * 104.83142 * 24.13000 * 17 5 4 19 19 H 1.09000 * 111.00135 * 81.06852 * 18 17 5 20 20 N 1.46499 * 111.00277 * 204.91089 * 18 17 5 21 21 C 1.36936 * 120.00696 * 267.20195 * 20 18 17 22 22 H 1.08006 * 119.99720 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00309 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00036 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00042 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47252 * 89.99988 * 25 23 21 27 27 H 1.48500 * 109.47129 * 209.99962 * 25 23 21 28 28 H 1.48491 * 109.47027 * 329.99869 * 25 23 21 29 29 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 30 30 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 31 31 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 32 32 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 33 33 H 1.08999 * 109.88321 * 100.02034 * 4 2 1 34 34 H 1.09011 * 109.46713 * 299.99192 * 8 6 5 35 35 H 1.08999 * 109.47372 * 59.99337 * 8 6 5 36 36 H 1.07995 * 119.97939 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.99268 * 180.27338 * 11 10 9 38 38 H 1.08001 * 120.01447 * 179.97438 * 14 12 11 39 39 H 1.09002 * 110.36463 * 142.97358 * 17 5 4 40 40 H 1.09007 * 110.36631 * 265.28998 * 17 5 4 41 41 H 0.97003 * 119.99808 * 87.19509 * 20 18 17 42 42 H 0.97002 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9916 -2.3820 -1.4934 7 8 3.7178 -2.5538 -2.6624 8 6 5.1665 -3.1002 -0.8813 9 6 5.8277 -3.9626 -1.9255 10 6 5.4930 -5.2999 -2.0299 11 6 6.0944 -6.0904 -2.9907 12 6 7.0411 -5.5458 -3.8422 13 9 7.6329 -6.3196 -4.7783 14 6 7.3803 -4.2082 -3.7339 15 6 6.7735 -3.4171 -2.7750 16 17 7.1986 -1.7395 -2.6379 17 6 3.4633 -1.2508 0.6854 18 6 2.0790 -0.7974 1.2124 19 1 1.4452 -1.6560 1.4347 20 7 2.2214 0.0656 2.3876 21 6 2.1868 -0.4774 3.6442 22 1 2.0540 -1.5420 3.7690 23 6 2.3223 0.3402 4.7577 24 7 2.2885 -0.1817 5.9654 25 14 2.5512 2.1816 4.5419 26 1 1.2236 2.8467 4.5236 27 1 3.3569 2.7157 5.6693 28 1 3.2551 2.4462 3.2615 29 1 -0.3633 -1.0272 0.0302 30 1 -0.3633 0.5398 0.8744 31 1 -0.3633 0.4874 -0.9047 32 1 1.3130 -1.4731 -1.5801 33 1 2.3741 -0.0989 -1.9979 34 1 5.8834 -2.3699 -0.5058 35 1 4.8212 -3.7265 -0.0588 36 1 4.7583 -5.7260 -1.3629 37 1 5.8292 -7.1340 -3.0746 38 1 8.1188 -3.7827 -4.3972 39 1 3.7961 -2.1446 1.2133 40 1 4.1932 -0.4490 0.7977 41 1 2.3404 1.0217 2.2756 42 1 2.3835 0.3897 6.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939069522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -65.301056 kcal Electronic energy + Delta-G solvation = -26727.931763 eV Core-core repulsion = 22647.720508 eV Total energy + Delta-G solvation = -4080.211254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.01930 -41.37727 -40.22155 -38.82140 -37.55063 -35.93499 -34.20495 -33.55747 -32.80068 -32.02732 -29.45561 -29.00255 -26.80363 -25.54789 -24.23945 -23.30092 -22.63020 -21.53611 -20.29151 -19.50305 -18.90541 -18.11589 -17.93982 -17.47945 -16.83342 -16.69508 -16.34766 -16.21834 -15.83483 -15.63782 -15.00254 -14.80892 -14.80274 -14.72417 -14.46449 -14.39603 -14.19341 -13.86122 -13.44391 -13.19820 -13.10266 -13.00212 -12.91472 -12.87212 -12.41952 -12.30086 -12.25273 -12.08648 -12.00931 -11.90322 -11.78375 -11.39444 -11.06745 -10.91522 -10.06095 -9.69336 -9.66572 -9.29649 -7.98588 -5.33413 -0.13094 0.00116 0.95023 1.42964 1.44937 1.52025 1.60103 1.92981 2.39988 2.51893 3.12637 3.30718 3.34979 3.49513 3.59105 3.71358 3.86437 3.86579 3.90142 4.03544 4.08650 4.31064 4.36165 4.40705 4.42917 4.56891 4.61614 4.70538 4.82105 4.83915 4.88905 4.92832 5.01976 5.10759 5.11301 5.21097 5.22282 5.34604 5.46522 5.64838 5.81597 6.24809 6.50610 7.09233 7.12839 7.84340 8.02850 9.22205 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002639 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.591407 B =10606.996037 C =10937.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.086 0.914 4 C 0.119 3.881 5 N -0.613 5.613 6 C 0.532 3.468 7 O -0.571 6.571 8 C -0.103 4.103 9 C -0.075 4.075 10 C -0.067 4.067 11 C -0.141 4.141 12 C 0.099 3.901 13 F -0.138 7.138 14 C -0.153 4.153 15 C -0.008 4.008 16 Cl -0.060 7.060 17 C 0.081 3.919 18 C 0.174 3.826 19 H 0.069 0.931 20 N -0.735 5.735 21 C -0.227 4.227 22 H 0.064 0.936 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.947 3.053 26 H -0.281 1.281 27 H -0.302 1.302 28 H -0.249 1.249 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.368 0.632 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -7.566 -19.564 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.105 0.895 4 C -0.003 4.003 5 N -0.347 5.347 6 C 0.322 3.678 7 O -0.451 6.451 8 C -0.142 4.142 9 C -0.076 4.076 10 C -0.085 4.085 11 C -0.160 4.160 12 C 0.080 3.920 13 F -0.116 7.116 14 C -0.172 4.172 15 C -0.035 4.035 16 Cl -0.031 7.031 17 C -0.045 4.045 18 C 0.064 3.936 19 H 0.087 0.913 20 N -0.377 5.377 21 C -0.357 4.357 22 H 0.082 0.918 23 C -0.250 4.250 24 N -0.632 5.632 25 Si 0.775 3.225 26 H -0.208 1.208 27 H -0.229 1.229 28 H -0.173 1.173 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.173 0.827 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.202 0.798 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.153 -7.727 -20.077 22.670 hybrid contribution 0.436 1.280 0.325 1.391 sum 7.588 -6.447 -19.751 22.119 Atomic orbital electron populations 1.21654 0.92701 1.02345 1.02274 1.22481 0.97530 0.99439 0.93234 0.89547 1.21972 0.87410 0.94466 0.96500 1.48490 1.30145 1.44109 1.11910 1.20365 0.83396 0.78493 0.85535 1.90688 1.71820 1.65144 1.17447 1.20742 0.95675 0.99717 0.98050 1.19420 0.96099 0.95079 0.97026 1.21173 0.98319 0.91332 0.97652 1.21506 0.96377 1.02840 0.95278 1.17594 0.95938 0.88545 0.89964 1.91513 1.82553 1.74408 1.63143 1.21040 1.03247 0.92605 1.00300 1.20583 0.98790 0.86001 0.98160 1.98383 1.92289 1.15265 1.97196 1.23199 1.00696 1.01441 0.79124 1.21487 0.93185 0.93451 0.85459 0.91318 1.42571 1.87991 1.05753 1.01415 1.19005 1.40231 0.93529 0.82982 0.91766 1.25408 1.02695 1.02112 0.94766 1.69865 1.59124 1.36183 0.97981 0.85534 0.77899 0.81386 0.77680 1.20761 1.22933 1.17306 0.92362 0.92883 0.90792 0.91039 0.91474 0.86889 0.84973 0.81623 0.81455 0.82738 0.90015 0.91356 0.79817 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.13 71.98 0.66 -2.40 16 2 C -0.11 -2.73 3.19 -9.61 -0.03 -2.76 16 3 H 0.09 2.16 8.01 -2.39 -0.02 2.14 16 4 C 0.12 2.97 6.46 86.73 0.56 3.53 16 5 N -0.61 -16.24 3.33 -811.78 -2.70 -18.94 16 6 C 0.53 14.36 7.84 87.66 0.69 15.04 16 7 O -0.57 -18.80 16.36 -3.04 -0.05 -18.85 16 8 C -0.10 -2.14 4.35 29.10 0.13 -2.02 16 9 C -0.07 -1.56 4.38 -19.84 -0.09 -1.65 16 10 C -0.07 -1.12 9.68 22.26 0.22 -0.91 16 11 C -0.14 -2.24 10.03 22.32 0.22 -2.02 16 12 C 0.10 1.87 7.30 22.37 0.16 2.03 16 13 F -0.14 -2.67 17.27 44.97 0.78 -1.89 16 14 C -0.15 -3.02 9.81 22.34 0.22 -2.80 16 15 C -0.01 -0.19 6.31 22.32 0.14 -0.04 16 16 Cl -0.06 -1.36 27.40 -2.72 -0.07 -1.43 16 17 C 0.08 2.27 6.39 86.85 0.55 2.82 16 18 C 0.17 5.54 3.16 46.38 0.15 5.69 16 19 H 0.07 2.33 7.99 -2.39 -0.02 2.31 16 20 N -0.74 -29.68 5.05 -316.40 -1.60 -31.28 16 21 C -0.23 -11.57 10.44 84.03 0.88 -10.70 16 22 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 23 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 24 N -0.98 -59.55 13.97 21.65 0.30 -59.25 16 25 Si 0.95 42.35 27.74 68.60 1.90 44.26 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.25 -9.83 6.52 99.48 0.65 -9.18 16 29 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.74 7.82 -2.38 -0.02 1.73 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 2.29 7.12 -2.38 -0.02 2.28 16 35 H 0.13 2.16 7.75 -2.39 -0.02 2.14 16 36 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.08 2.19 7.48 -2.39 -0.02 2.17 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.37 14.40 5.63 -92.71 -0.52 13.88 16 42 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -66.21 368.84 3.95 -62.26 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.47 Total: 24.02 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.92 Total: 1.11 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.99 Total: -109.47 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.90 Total: 44.26 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -66.21 3.95 -62.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939069522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.042 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds