Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.49520 * 2 1 4 4 C 1.53197 * 109.51937 * 239.92017 * 2 1 3 5 5 N 1.46924 * 108.77173 * 185.39703 * 4 2 1 6 6 C 1.36939 * 120.62929 * 233.58385 * 5 4 2 7 7 H 1.07993 * 120.00109 * 27.69024 * 6 5 4 8 8 C 1.38817 * 119.99778 * 207.68469 * 6 5 4 9 9 N 1.31617 * 119.99712 * 17.37539 * 8 6 5 10 10 Si 1.86796 * 119.99855 * 197.36932 * 8 6 5 11 11 H 1.48501 * 109.47194 * 90.00102 * 10 8 6 12 12 H 1.48502 * 109.47153 * 210.00435 * 10 8 6 13 13 H 1.48506 * 109.47037 * 330.00269 * 10 8 6 14 14 C 1.46926 * 118.73759 * 53.60902 * 5 4 2 15 15 C 1.53185 * 108.76659 * 306.38301 * 14 5 4 16 16 C 1.53036 * 109.31444 * 54.65749 * 15 14 5 17 17 H 1.08992 * 109.46387 * 58.62923 * 16 15 14 18 18 N 1.46500 * 109.45981 * 178.60401 * 16 15 14 19 19 C 1.34782 * 119.99940 * 275.02352 * 18 16 15 20 20 O 1.21574 * 119.99844 * 359.97438 * 19 18 16 21 21 C 1.47626 * 119.99791 * 179.97438 * 19 18 16 22 22 C 1.39694 * 120.15634 * 359.72771 * 21 19 18 23 23 C 1.37803 * 119.89101 * 179.74307 * 22 21 19 24 24 C 1.38610 * 120.20320 * 0.53383 * 23 22 21 25 25 Cl 1.73598 * 119.84350 * 179.76319 * 24 23 22 26 26 C 1.38358 * 120.31214 * 359.73653 * 24 23 22 27 27 C 1.38257 * 120.10493 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.10396 * 179.97438 * 27 26 24 29 29 H 1.09006 * 109.46654 * 299.93764 * 1 2 3 30 30 H 1.08995 * 109.47204 * 59.92926 * 1 2 3 31 31 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58731 * 305.18281 * 4 2 1 33 33 H 1.08996 * 109.58737 * 65.46737 * 4 2 1 34 34 H 0.97007 * 119.99353 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.58789 * 66.17922 * 14 5 4 36 36 H 1.09001 * 109.58488 * 186.60141 * 14 5 4 37 37 H 1.09007 * 109.50702 * 294.69731 * 15 14 5 38 38 H 1.09001 * 109.48920 * 174.60191 * 15 14 5 39 39 H 0.96999 * 120.00309 * 95.02949 * 18 16 15 40 40 H 1.07997 * 120.05515 * 0.02562 * 22 21 19 41 41 H 1.07992 * 119.89574 * 180.24955 * 23 22 21 42 42 H 1.07998 * 119.94895 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 -1.2495 5 7 3.5052 -0.8283 -1.1691 6 6 4.2942 -0.3783 -2.1939 7 1 3.9472 0.4212 -2.8315 8 6 5.5402 -0.9497 -2.4130 9 7 5.8293 -2.1202 -1.8851 10 14 6.8063 -0.0575 -3.4571 11 1 7.6357 0.8170 -2.5896 12 1 7.6770 -1.0508 -4.1356 13 1 6.1127 0.7706 -4.4761 14 6 4.1059 -1.4256 0.0315 15 6 3.5708 -0.6938 1.2663 16 6 2.0408 -0.7228 1.2485 17 1 1.6974 -1.7571 1.2353 18 7 1.5260 -0.0528 2.4452 19 6 1.3975 -0.7382 3.5986 20 8 1.7083 -1.9126 3.6457 21 6 0.8792 -0.0628 4.8047 22 6 0.5265 1.2880 4.7557 23 6 0.0383 1.9116 5.8834 24 6 -0.0934 1.2056 7.0689 25 17 -0.7036 2.0021 8.4855 26 6 0.2587 -0.1311 7.1285 27 6 0.7443 -0.7711 6.0032 28 9 1.0886 -2.0762 6.0615 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6063 -1.7217 -1.2979 33 1 1.7622 -0.1593 -2.1390 34 1 6.7002 -2.5194 -2.0379 35 1 3.8386 -2.4808 0.0875 36 1 5.1901 -1.3230 -0.0128 37 1 3.9153 0.3404 1.2542 38 1 3.9336 -1.1881 2.1675 39 1 1.2776 0.8841 2.4076 40 1 0.6318 1.8414 3.8343 41 1 -0.2383 2.9548 5.8445 42 1 0.1534 -0.6756 8.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942344521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -44.048765 kcal Electronic energy + Delta-G solvation = -27158.344184 eV Core-core repulsion = 23079.054499 eV Total energy + Delta-G solvation = -4079.289686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.13827 -40.35960 -39.01474 -37.62230 -36.89732 -34.63291 -32.91068 -31.68942 -31.16836 -31.00638 -29.64847 -25.96148 -25.40120 -24.16470 -23.26116 -22.11914 -21.03549 -20.49652 -19.55368 -18.39695 -17.45940 -17.08440 -16.64362 -16.03765 -15.79096 -15.65509 -15.05527 -14.79473 -14.62091 -14.13864 -13.87537 -13.77329 -13.69237 -13.54217 -13.31538 -12.85422 -12.80839 -12.68206 -12.17658 -12.03558 -11.76454 -11.55895 -11.51498 -11.33695 -11.08535 -10.83262 -10.68835 -10.38555 -10.23471 -10.06596 -9.93764 -9.81045 -9.57051 -9.51211 -9.20427 -8.74867 -8.44154 -6.71096 -5.79862 -3.22885 0.12071 0.57886 1.44841 2.47838 3.10376 3.35032 3.37206 3.43852 3.45299 3.75368 4.08204 4.36920 4.44148 4.47752 4.60721 4.89496 5.07253 5.26740 5.29479 5.37865 5.41968 5.46299 5.50251 5.54094 5.58138 5.86257 5.93449 6.06418 6.12267 6.21363 6.22951 6.30376 6.41149 6.56959 6.64315 6.75378 6.86887 6.93062 7.35177 7.55702 7.66996 7.78331 8.23828 8.43113 9.19184 9.82543 10.38867 11.28596 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.002375 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.769144 B =11788.096286 C =11964.170489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.903 3.097 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.173 3.827 15 C -0.148 4.148 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.713 5.713 19 C 0.551 3.449 20 O -0.519 6.519 21 C -0.162 4.162 22 C -0.046 4.046 23 C -0.129 4.129 24 C 0.012 3.988 25 Cl -0.052 7.052 26 C -0.159 4.159 27 C 0.173 3.827 28 F -0.105 7.105 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.393 0.607 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 9.850 17.890 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.364 5.364 19 C 0.337 3.663 20 O -0.396 6.396 21 C -0.166 4.166 22 C -0.065 4.065 23 C -0.148 4.148 24 C -0.015 4.015 25 Cl -0.023 7.023 26 C -0.178 4.178 27 C 0.152 3.848 28 F -0.083 7.083 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.228 0.772 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.240 8.892 17.971 24.593 hybrid contribution 0.598 0.753 -0.256 0.995 sum -13.642 9.646 17.716 24.351 Atomic orbital electron populations 1.21782 0.95762 1.01687 1.00809 1.21983 0.94518 1.00615 0.96441 0.91008 1.20886 0.86015 0.96669 0.93683 1.44108 0.99265 1.71448 1.16637 1.19175 0.98207 1.12415 1.08661 0.91584 1.25056 0.99942 0.95340 0.99276 1.70041 1.21881 1.14542 1.47977 0.86290 0.81669 0.78906 0.79886 1.21460 1.21760 1.20438 1.20770 0.99498 0.93133 0.81911 1.22588 0.93690 1.01611 1.00916 1.21131 0.94676 0.96979 0.81780 0.89753 1.46198 1.65656 1.14143 1.10392 1.17866 0.78976 0.86634 0.82869 1.90875 1.49082 1.15308 1.84316 1.20384 1.06454 0.95293 0.94518 1.21209 0.94181 0.92290 0.98790 1.21050 1.01666 1.01275 0.90805 1.20814 0.99014 0.92491 0.89228 1.98407 1.85627 1.79506 1.38758 1.20980 1.03576 0.94065 0.99225 1.17453 0.95564 0.79198 0.92567 1.91649 1.88549 1.31465 1.96619 0.93559 0.92636 0.92813 0.96150 0.92317 0.93544 0.96071 0.89151 0.92582 0.92720 0.77204 0.83531 0.83516 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.03 37.16 0.34 -1.45 16 2 C -0.11 -1.80 2.46 -90.49 -0.22 -2.02 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.15 3.09 5.80 -3.71 -0.02 3.07 16 5 N -0.59 -14.50 2.99 -172.32 -0.52 -15.02 16 6 C -0.26 -6.85 9.59 -15.06 -0.14 -7.00 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 10 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 15 C -0.15 -2.89 5.65 -26.62 -0.15 -3.04 16 16 C 0.16 2.63 1.88 -67.89 -0.13 2.51 16 17 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 18 N -0.71 -9.49 4.31 -54.78 -0.24 -9.72 16 19 C 0.55 8.18 7.73 -12.43 -0.10 8.08 16 20 O -0.52 -10.02 15.00 5.30 0.08 -9.94 16 21 C -0.16 -1.85 5.88 -104.91 -0.62 -2.47 16 22 C -0.05 -0.35 9.54 -39.20 -0.37 -0.73 16 23 C -0.13 -0.87 9.81 -39.60 -0.39 -1.25 16 24 C 0.01 0.09 6.32 -39.40 -0.25 -0.16 16 25 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 26 C -0.16 -1.40 9.79 -39.53 -0.39 -1.78 16 27 C 0.17 2.02 7.28 -38.97 -0.28 1.73 16 28 F -0.10 -1.51 15.55 2.25 0.04 -1.47 16 29 H 0.05 0.49 7.36 -51.93 -0.38 0.10 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.39 3.90 6.34 -40.82 -0.26 3.64 16 40 H 0.15 0.76 6.40 -52.49 -0.34 0.43 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -31.87 360.82 -9.39 -41.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.45 Total: 0.76 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.83 Total: -0.37 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.13 Total: -50.26 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.87 -9.39 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942344521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.787 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds