Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.49520 * 2 1 4 4 C 1.53197 * 109.51937 * 239.92017 * 2 1 3 5 5 N 1.46924 * 108.77173 * 185.39703 * 4 2 1 6 6 C 1.36939 * 120.62929 * 233.58385 * 5 4 2 7 7 H 1.07993 * 120.00109 * 27.69024 * 6 5 4 8 8 C 1.38817 * 119.99778 * 207.68469 * 6 5 4 9 9 N 1.31617 * 119.99712 * 17.37539 * 8 6 5 10 10 Si 1.86796 * 119.99855 * 197.36932 * 8 6 5 11 11 H 1.48501 * 109.47194 * 90.00102 * 10 8 6 12 12 H 1.48502 * 109.47153 * 210.00435 * 10 8 6 13 13 H 1.48506 * 109.47037 * 330.00269 * 10 8 6 14 14 C 1.46926 * 118.73759 * 53.60902 * 5 4 2 15 15 C 1.53185 * 108.76659 * 306.38301 * 14 5 4 16 16 C 1.53036 * 109.31444 * 54.65749 * 15 14 5 17 17 H 1.08992 * 109.46387 * 58.62923 * 16 15 14 18 18 N 1.46500 * 109.45981 * 178.60401 * 16 15 14 19 19 C 1.34782 * 119.99940 * 275.02352 * 18 16 15 20 20 O 1.21574 * 119.99844 * 359.97438 * 19 18 16 21 21 C 1.47626 * 119.99791 * 179.97438 * 19 18 16 22 22 C 1.39694 * 120.15634 * 359.72771 * 21 19 18 23 23 C 1.37803 * 119.89101 * 179.74307 * 22 21 19 24 24 C 1.38610 * 120.20320 * 0.53383 * 23 22 21 25 25 Cl 1.73598 * 119.84350 * 179.76319 * 24 23 22 26 26 C 1.38358 * 120.31214 * 359.73653 * 24 23 22 27 27 C 1.38257 * 120.10493 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.10396 * 179.97438 * 27 26 24 29 29 H 1.09006 * 109.46654 * 299.93764 * 1 2 3 30 30 H 1.08995 * 109.47204 * 59.92926 * 1 2 3 31 31 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58731 * 305.18281 * 4 2 1 33 33 H 1.08996 * 109.58737 * 65.46737 * 4 2 1 34 34 H 0.97007 * 119.99353 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.58789 * 66.17922 * 14 5 4 36 36 H 1.09001 * 109.58488 * 186.60141 * 14 5 4 37 37 H 1.09007 * 109.50702 * 294.69731 * 15 14 5 38 38 H 1.09001 * 109.48920 * 174.60191 * 15 14 5 39 39 H 0.96999 * 120.00309 * 95.02949 * 18 16 15 40 40 H 1.07997 * 120.05515 * 0.02562 * 22 21 19 41 41 H 1.07992 * 119.89574 * 180.24955 * 23 22 21 42 42 H 1.07998 * 119.94895 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 -1.2495 5 7 3.5052 -0.8283 -1.1691 6 6 4.2942 -0.3783 -2.1939 7 1 3.9472 0.4212 -2.8315 8 6 5.5402 -0.9497 -2.4130 9 7 5.8293 -2.1202 -1.8851 10 14 6.8063 -0.0575 -3.4571 11 1 7.6357 0.8170 -2.5896 12 1 7.6770 -1.0508 -4.1356 13 1 6.1127 0.7706 -4.4761 14 6 4.1059 -1.4256 0.0315 15 6 3.5708 -0.6938 1.2663 16 6 2.0408 -0.7228 1.2485 17 1 1.6974 -1.7571 1.2353 18 7 1.5260 -0.0528 2.4452 19 6 1.3975 -0.7382 3.5986 20 8 1.7083 -1.9126 3.6457 21 6 0.8792 -0.0628 4.8047 22 6 0.5265 1.2880 4.7557 23 6 0.0383 1.9116 5.8834 24 6 -0.0934 1.2056 7.0689 25 17 -0.7036 2.0021 8.4855 26 6 0.2587 -0.1311 7.1285 27 6 0.7443 -0.7711 6.0032 28 9 1.0886 -2.0762 6.0615 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6063 -1.7217 -1.2979 33 1 1.7622 -0.1593 -2.1390 34 1 6.7002 -2.5194 -2.0379 35 1 3.8386 -2.4808 0.0875 36 1 5.1901 -1.3230 -0.0128 37 1 3.9153 0.3404 1.2542 38 1 3.9336 -1.1881 2.1675 39 1 1.2776 0.8841 2.4076 40 1 0.6318 1.8414 3.8343 41 1 -0.2383 2.9548 5.8445 42 1 0.1534 -0.6756 8.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942344521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -62.958556 kcal Electronic energy + Delta-G solvation = -27159.164174 eV Core-core repulsion = 23079.054499 eV Total energy + Delta-G solvation = -4080.109676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.07168 -41.44604 -39.98141 -39.00451 -37.53915 -36.25533 -34.35820 -32.95215 -32.62869 -31.76592 -31.16066 -27.41318 -27.04895 -25.23810 -24.16710 -23.46723 -22.65080 -21.68576 -20.99399 -19.35740 -18.70058 -18.31171 -17.91699 -17.03707 -16.93109 -16.69531 -16.49290 -15.94146 -15.87614 -15.60467 -15.40524 -14.93955 -14.63160 -14.58200 -14.57338 -14.29540 -14.22830 -13.61113 -13.55871 -13.06727 -13.02162 -12.75187 -12.71394 -12.59710 -12.44103 -12.31211 -12.12028 -12.06573 -12.02082 -11.66523 -11.58658 -11.33700 -11.00752 -10.57559 -10.26447 -10.10512 -9.84218 -8.72556 -7.87508 -5.33852 -0.63573 -0.07462 0.84747 1.48032 1.49340 1.58447 1.59080 1.98402 2.45267 2.51585 3.01409 3.27920 3.45587 3.49038 3.65239 3.75753 3.80982 3.91939 4.02564 4.15825 4.28859 4.37493 4.58226 4.60778 4.71017 4.72906 4.80424 4.86107 4.87222 4.89701 4.94276 5.02310 5.11192 5.14349 5.29908 5.38824 5.43337 5.48864 5.52650 5.63792 5.69255 6.37620 6.47398 7.12520 7.14750 7.83603 8.36445 9.19519 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.002375 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.769144 B =11788.096286 C =11964.170489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.148 3.852 5 N -0.609 5.609 6 C -0.259 4.259 7 H 0.076 0.924 8 C -0.056 4.056 9 N -0.940 5.940 10 Si 0.970 3.030 11 H -0.285 1.285 12 H -0.299 1.299 13 H -0.263 1.263 14 C 0.182 3.818 15 C -0.132 4.132 16 C 0.170 3.830 17 H 0.055 0.945 18 N -0.695 5.695 19 C 0.550 3.450 20 O -0.575 6.575 21 C -0.180 4.180 22 C -0.031 4.031 23 C -0.114 4.114 24 C 0.014 3.986 25 Cl -0.040 7.040 26 C -0.156 4.156 27 C 0.144 3.856 28 F -0.132 7.132 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.007 0.993 33 H 0.068 0.932 34 H 0.249 0.751 35 H -0.014 1.014 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.415 0.585 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.725 14.050 18.602 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.105 0.895 4 C 0.022 3.978 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.094 0.906 8 C -0.251 4.251 9 N -0.586 5.586 10 Si 0.798 3.202 11 H -0.212 1.212 12 H -0.226 1.226 13 H -0.188 1.188 14 C 0.056 3.944 15 C -0.172 4.172 16 C 0.065 3.935 17 H 0.073 0.927 18 N -0.347 5.347 19 C 0.338 3.662 20 O -0.455 6.455 21 C -0.184 4.184 22 C -0.049 4.049 23 C -0.132 4.132 24 C -0.013 4.013 25 Cl -0.010 7.010 26 C -0.175 4.175 27 C 0.123 3.877 28 F -0.110 7.110 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.004 0.996 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.254 0.746 40 H 0.196 0.804 41 H 0.200 0.800 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.421 13.163 18.692 28.148 hybrid contribution 1.176 -0.524 -0.399 1.348 sum -15.245 12.639 18.294 26.960 Atomic orbital electron populations 1.21739 0.92593 1.01822 1.03156 1.21772 0.96928 1.00086 0.93113 0.89525 1.21101 0.83401 0.96769 0.96518 1.44355 1.01181 1.71353 1.16274 1.19584 0.98567 1.12105 1.08672 0.90644 1.25881 1.02035 0.96016 1.01140 1.70222 1.21929 1.16329 1.50099 0.85229 0.78992 0.77522 0.78484 1.21225 1.22642 1.18766 1.20464 0.97728 0.91994 0.84250 1.22328 0.95992 1.01059 0.97863 1.20708 0.92515 0.96307 0.83984 0.92705 1.45820 1.64986 1.14976 1.08915 1.18410 0.77879 0.86070 0.83873 1.90853 1.51484 1.17925 1.85213 1.20181 1.08639 0.96863 0.92739 1.21518 0.92515 0.90427 1.00485 1.21446 0.99618 1.02597 0.89572 1.20990 0.98090 0.92070 0.90140 1.98422 1.85323 1.79043 1.38260 1.21065 1.02955 0.94734 0.98737 1.17826 0.97434 0.78533 0.93920 1.91576 1.89198 1.33444 1.96822 0.90608 0.90889 0.93868 0.97503 0.91367 0.94229 0.99590 0.92544 0.91499 0.93833 0.74597 0.80350 0.80029 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.03 71.98 0.65 -2.28 16 2 C -0.10 -2.90 2.46 -10.71 -0.03 -2.92 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.15 5.86 5.80 86.36 0.50 6.36 16 5 N -0.61 -30.38 2.99 -699.11 -2.09 -32.48 16 6 C -0.26 -14.02 9.59 84.03 0.81 -13.21 16 7 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 8 C -0.06 -3.12 4.91 84.86 0.42 -2.71 16 9 N -0.94 -57.00 11.19 21.65 0.24 -56.76 16 10 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 C 0.18 9.25 5.31 86.36 0.46 9.71 16 15 C -0.13 -5.29 5.65 30.67 0.17 -5.12 16 16 C 0.17 5.63 1.88 45.02 0.08 5.71 16 17 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 18 N -0.70 -17.21 4.31 -445.50 -1.92 -19.13 16 19 C 0.55 16.15 7.73 86.72 0.67 16.82 16 20 O -0.57 -23.26 15.00 -3.95 -0.06 -23.32 16 21 C -0.18 -3.85 5.88 -20.05 -0.12 -3.97 16 22 C -0.03 -0.35 9.54 22.52 0.21 -0.14 16 23 C -0.11 -1.00 9.81 22.26 0.22 -0.78 16 24 C 0.01 0.17 6.32 22.39 0.14 0.32 16 25 Cl -0.04 -0.42 28.95 -2.72 -0.08 -0.50 16 26 C -0.16 -2.50 9.79 22.30 0.22 -2.28 16 27 C 0.14 3.31 7.28 22.67 0.17 3.48 16 28 F -0.13 -4.03 15.55 44.97 0.70 -3.33 16 29 H 0.08 1.23 7.36 -2.38 -0.02 1.21 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 34 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 37 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.42 6.53 6.34 -92.71 -0.59 5.94 16 40 H 0.18 0.82 6.40 -2.91 -0.02 0.80 16 41 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.30 360.82 3.86 -71.44 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.47 Total: 8.31 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.57 Total: 9.00 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -3.77 Total: -108.37 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.70 Total: -3.33 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -75.30 3.86 -71.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942344521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.486 kcal (2) G-P(sol) polarization free energy of solvation -75.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds