Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.52118 * 2 1 4 4 C 1.53185 * 109.49659 * 120.08619 * 2 1 3 5 5 N 1.46929 * 108.77453 * 174.58830 * 4 2 1 6 6 C 1.36933 * 120.63330 * 126.41674 * 5 4 2 7 7 H 1.08004 * 119.99771 * 207.66282 * 6 5 4 8 8 C 1.38812 * 120.00091 * 27.65118 * 6 5 4 9 9 N 1.31617 * 120.00088 * 17.37999 * 8 6 5 10 10 Si 1.86806 * 119.99919 * 197.38240 * 8 6 5 11 11 H 1.48502 * 109.46851 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47121 * 120.00134 * 10 8 6 13 13 H 1.48493 * 109.46940 * 240.00199 * 10 8 6 14 14 C 1.46927 * 118.73538 * 306.38811 * 5 4 2 15 15 C 1.53188 * 108.77824 * 53.60931 * 14 5 4 16 16 C 1.53041 * 109.31347 * 305.36646 * 15 14 5 17 17 H 1.09001 * 109.45795 * 301.35726 * 16 15 14 18 18 N 1.46495 * 109.46374 * 181.38121 * 16 15 14 19 19 C 1.34777 * 119.99846 * 84.99970 * 18 16 15 20 20 O 1.21576 * 120.00210 * 359.97438 * 19 18 16 21 21 C 1.47700 * 120.00284 * 180.02562 * 19 18 16 22 22 C 1.39653 * 120.15498 * 359.97438 * 21 19 18 23 23 C 1.37976 * 119.86222 * 180.02562 * 22 21 19 24 24 Cl 1.73594 * 119.90312 * 179.97438 * 23 22 21 25 25 C 1.38559 * 120.19004 * 359.97438 * 23 22 21 26 26 C 1.38190 * 120.32888 * 359.97438 * 25 23 22 27 27 C 1.38330 * 120.13130 * 0.02562 * 26 25 23 28 28 F 1.35094 * 120.09481 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46546 * 300.07630 * 1 2 3 31 31 H 1.08998 * 109.47252 * 60.07580 * 1 2 3 32 32 H 1.08999 * 109.59123 * 54.79938 * 4 2 1 33 33 H 1.08997 * 109.58679 * 294.37075 * 4 2 1 34 34 H 0.96997 * 119.99600 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.58853 * 293.81889 * 14 5 4 36 36 H 1.09001 * 109.58735 * 173.40061 * 14 5 4 37 37 H 1.08999 * 109.50186 * 185.41107 * 15 14 5 38 38 H 1.09000 * 109.49556 * 65.31247 * 15 14 5 39 39 H 0.96995 * 120.00542 * 264.99996 * 18 16 15 40 40 H 1.07997 * 120.07116 * 359.74922 * 22 21 19 41 41 H 1.07999 * 119.84084 * 180.02562 * 25 23 22 42 42 H 1.07998 * 119.93786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3795 2.1944 7 1 5.2990 -0.0402 1.9930 8 6 3.8011 -0.3595 3.4920 9 7 2.7376 -1.0696 3.8033 10 14 4.6479 0.6753 4.7966 11 1 5.8118 1.3744 4.1952 12 1 3.6913 1.6773 5.3314 13 1 5.1132 -0.2029 5.8999 14 6 4.1053 -1.4267 -0.0309 15 6 3.5709 -0.6950 -1.2661 16 6 2.0408 -0.7230 -1.2485 17 1 1.6967 -1.7572 -1.2352 18 7 1.5265 -0.0528 -2.4453 19 6 1.3971 -0.7384 -3.5984 20 8 1.7076 -1.9129 -3.6455 21 6 0.8791 -0.0626 -4.8053 22 6 0.5218 1.2865 -4.7551 23 6 0.0381 1.9117 -5.8859 24 17 -0.4069 3.5885 -5.8246 25 6 -0.0936 1.2049 -7.0704 26 6 0.2585 -0.1301 -7.1293 27 6 0.7450 -0.7702 -6.0036 28 9 1.0895 -2.0752 -6.0621 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6053 -1.7217 1.2979 33 1 1.7638 -0.1581 2.1388 34 1 2.3937 -1.0559 4.7102 35 1 3.8376 -2.4818 -0.0870 36 1 5.1896 -1.3247 0.0136 37 1 3.9334 -1.1896 -2.1672 38 1 3.9159 0.3389 -1.2541 39 1 1.2791 0.8843 -2.4079 40 1 0.6198 1.8383 -3.8318 41 1 -0.4725 1.6999 -7.9523 42 1 0.1537 -0.6748 -8.0559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942368477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -44.552694 kcal Electronic energy + Delta-G solvation = -27291.832492 eV Core-core repulsion = 23212.520954 eV Total energy + Delta-G solvation = -4079.311538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14595 -40.37587 -39.00283 -37.58228 -36.80746 -34.62238 -32.79889 -31.88583 -31.57807 -30.69445 -29.31804 -26.00024 -25.47151 -24.31036 -23.15875 -22.13232 -20.91535 -20.50704 -19.54599 -18.34775 -17.45962 -17.09689 -16.69237 -16.03715 -15.89434 -15.65751 -14.95826 -14.85630 -14.63494 -13.97702 -13.83080 -13.77462 -13.70858 -13.55556 -13.20129 -12.95561 -12.89598 -12.57572 -12.12936 -11.99765 -11.67152 -11.51385 -11.47575 -11.33680 -11.10434 -10.75793 -10.68219 -10.38334 -10.22274 -10.02376 -9.99382 -9.76513 -9.72487 -9.49937 -9.06405 -8.76532 -8.47860 -6.70986 -5.81340 -3.23102 0.18730 0.48625 1.58091 2.47828 3.09082 3.31620 3.35757 3.44026 3.46144 3.71268 4.07121 4.19757 4.47831 4.53942 4.66296 4.97151 5.08957 5.21096 5.29584 5.41781 5.43163 5.44602 5.52401 5.55431 5.64966 5.84351 6.05192 6.08940 6.11812 6.19599 6.31488 6.41822 6.47218 6.55678 6.65463 6.77069 6.87959 6.97100 7.30660 7.51427 7.63850 7.78611 8.21008 8.42404 9.18795 9.81971 10.38734 11.27463 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002727 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.116884 B =10265.870341 C =11205.980443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.085 0.915 18 N -0.712 5.712 19 C 0.553 3.447 20 O -0.521 6.521 21 C -0.155 4.155 22 C -0.050 4.050 23 C -0.057 4.057 24 Cl -0.056 7.056 25 C -0.059 4.059 26 C -0.152 4.152 27 C 0.164 3.836 28 F -0.107 7.107 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 7.537 -22.061 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 H 0.087 0.913 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.362 5.362 19 C 0.338 3.662 20 O -0.398 6.398 21 C -0.159 4.159 22 C -0.069 4.069 23 C -0.084 4.084 24 Cl -0.027 7.027 25 C -0.078 4.078 26 C -0.171 4.171 27 C 0.143 3.857 28 F -0.085 7.085 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.229 0.771 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.433 6.750 -21.873 24.395 hybrid contribution 0.232 0.971 0.676 1.205 sum -8.201 7.720 -21.197 24.004 Atomic orbital electron populations 1.21737 0.95839 1.01577 1.00614 1.22185 0.94739 1.00670 0.96747 0.91344 1.20806 0.83062 0.97116 0.93552 1.44119 1.01746 1.69378 1.16302 1.19231 0.97757 1.35336 0.85807 0.91567 1.25041 0.98552 0.99087 0.96976 1.70036 1.25652 1.40208 1.18748 0.86238 0.78903 0.80004 0.81728 1.20260 1.21573 1.21728 1.20876 0.96720 0.94306 0.86051 1.22402 0.94579 1.01446 0.99647 1.21150 0.93987 0.97299 0.82180 0.89712 1.46226 1.65437 1.14230 1.10346 1.17842 0.78935 0.86583 0.82814 1.90864 1.49358 1.15201 1.84334 1.20203 1.06526 0.94394 0.94790 1.21138 0.94940 0.92622 0.98228 1.20787 1.04959 0.87161 0.95518 1.98402 1.91249 1.14365 1.98671 1.21076 0.96639 0.93057 0.97041 1.21136 1.02436 0.95103 0.98443 1.17775 0.95600 0.79167 0.93135 1.91635 1.88555 1.31683 1.96663 0.92914 0.92473 0.93971 0.96074 0.88901 0.93647 0.96113 0.92482 0.92581 0.92222 0.77079 0.83529 0.83433 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 37.16 0.34 -1.76 16 2 C -0.12 -2.16 2.46 -90.50 -0.22 -2.38 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.18 4.15 4.59 -3.71 -0.02 4.13 16 5 N -0.59 -14.60 3.00 -172.32 -0.52 -15.12 16 6 C -0.25 -6.80 9.59 -15.06 -0.14 -6.94 16 7 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 10 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 15 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 16 C 0.16 2.67 1.88 -67.89 -0.13 2.54 16 17 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 18 N -0.71 -9.79 4.31 -54.75 -0.24 -10.03 16 19 C 0.55 8.21 7.73 -12.40 -0.10 8.12 16 20 O -0.52 -9.82 15.00 5.30 0.08 -9.74 16 21 C -0.15 -1.79 5.88 -104.92 -0.62 -2.40 16 22 C -0.05 -0.44 9.31 -39.15 -0.36 -0.81 16 23 C -0.06 -0.44 6.31 -39.56 -0.25 -0.69 16 24 Cl -0.06 -0.41 28.95 -51.86 -1.50 -1.91 16 25 C -0.06 -0.38 9.82 -39.48 -0.39 -0.77 16 26 C -0.15 -1.14 10.01 -39.57 -0.40 -1.53 16 27 C 0.16 1.82 7.28 -38.96 -0.28 1.54 16 28 F -0.11 -1.48 15.55 2.25 0.04 -1.44 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.53 7.36 -51.93 -0.38 0.14 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 4.31 6.34 -40.82 -0.26 4.06 16 40 H 0.15 1.07 6.40 -52.49 -0.34 0.73 16 41 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -31.36 360.83 -9.39 -40.75 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.45 Total: 1.39 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.83 Total: -0.56 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.13 Total: -50.25 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.36 -9.39 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942368477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.805 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds