Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.52118 * 2 1 4 4 C 1.53185 * 109.49659 * 120.08619 * 2 1 3 5 5 N 1.46929 * 108.77453 * 174.58830 * 4 2 1 6 6 C 1.36933 * 120.63330 * 126.41674 * 5 4 2 7 7 H 1.08004 * 119.99771 * 207.66282 * 6 5 4 8 8 C 1.38812 * 120.00091 * 27.65118 * 6 5 4 9 9 N 1.31617 * 120.00088 * 17.37999 * 8 6 5 10 10 Si 1.86806 * 119.99919 * 197.38240 * 8 6 5 11 11 H 1.48502 * 109.46851 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47121 * 120.00134 * 10 8 6 13 13 H 1.48493 * 109.46940 * 240.00199 * 10 8 6 14 14 C 1.46927 * 118.73538 * 306.38811 * 5 4 2 15 15 C 1.53188 * 108.77824 * 53.60931 * 14 5 4 16 16 C 1.53041 * 109.31347 * 305.36646 * 15 14 5 17 17 H 1.09001 * 109.45795 * 301.35726 * 16 15 14 18 18 N 1.46495 * 109.46374 * 181.38121 * 16 15 14 19 19 C 1.34777 * 119.99846 * 84.99970 * 18 16 15 20 20 O 1.21576 * 120.00210 * 359.97438 * 19 18 16 21 21 C 1.47700 * 120.00284 * 180.02562 * 19 18 16 22 22 C 1.39653 * 120.15498 * 359.97438 * 21 19 18 23 23 C 1.37976 * 119.86222 * 180.02562 * 22 21 19 24 24 Cl 1.73594 * 119.90312 * 179.97438 * 23 22 21 25 25 C 1.38559 * 120.19004 * 359.97438 * 23 22 21 26 26 C 1.38190 * 120.32888 * 359.97438 * 25 23 22 27 27 C 1.38330 * 120.13130 * 0.02562 * 26 25 23 28 28 F 1.35094 * 120.09481 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46546 * 300.07630 * 1 2 3 31 31 H 1.08998 * 109.47252 * 60.07580 * 1 2 3 32 32 H 1.08999 * 109.59123 * 54.79938 * 4 2 1 33 33 H 1.08997 * 109.58679 * 294.37075 * 4 2 1 34 34 H 0.96997 * 119.99600 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.58853 * 293.81889 * 14 5 4 36 36 H 1.09001 * 109.58735 * 173.40061 * 14 5 4 37 37 H 1.08999 * 109.50186 * 185.41107 * 15 14 5 38 38 H 1.09000 * 109.49556 * 65.31247 * 15 14 5 39 39 H 0.96995 * 120.00542 * 264.99996 * 18 16 15 40 40 H 1.07997 * 120.07116 * 359.74922 * 22 21 19 41 41 H 1.07999 * 119.84084 * 180.02562 * 25 23 22 42 42 H 1.07998 * 119.93786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3795 2.1944 7 1 5.2990 -0.0402 1.9930 8 6 3.8011 -0.3595 3.4920 9 7 2.7376 -1.0696 3.8033 10 14 4.6479 0.6753 4.7966 11 1 5.8118 1.3744 4.1952 12 1 3.6913 1.6773 5.3314 13 1 5.1132 -0.2029 5.8999 14 6 4.1053 -1.4267 -0.0309 15 6 3.5709 -0.6950 -1.2661 16 6 2.0408 -0.7230 -1.2485 17 1 1.6967 -1.7572 -1.2352 18 7 1.5265 -0.0528 -2.4453 19 6 1.3971 -0.7384 -3.5984 20 8 1.7076 -1.9129 -3.6455 21 6 0.8791 -0.0626 -4.8053 22 6 0.5218 1.2865 -4.7551 23 6 0.0381 1.9117 -5.8859 24 17 -0.4069 3.5885 -5.8246 25 6 -0.0936 1.2049 -7.0704 26 6 0.2585 -0.1301 -7.1293 27 6 0.7450 -0.7702 -6.0036 28 9 1.0895 -2.0752 -6.0621 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6053 -1.7217 1.2979 33 1 1.7638 -0.1581 2.1388 34 1 2.3937 -1.0559 4.7102 35 1 3.8376 -2.4818 -0.0870 36 1 5.1896 -1.3247 0.0136 37 1 3.9334 -1.1896 -2.1672 38 1 3.9159 0.3389 -1.2541 39 1 1.2791 0.8843 -2.4079 40 1 0.6198 1.8383 -3.8318 41 1 -0.4725 1.6999 -7.9523 42 1 0.1537 -0.6748 -8.0559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942368477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -62.506797 kcal Electronic energy + Delta-G solvation = -27292.611040 eV Core-core repulsion = 23212.520954 eV Total energy + Delta-G solvation = -4080.090086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.03187 -41.46446 -39.98011 -38.99941 -37.43151 -36.22947 -34.22470 -33.54132 -32.65637 -31.38702 -30.96320 -27.57199 -27.08804 -25.40067 -24.14835 -23.42137 -22.53253 -21.68864 -21.02561 -19.41640 -18.69382 -18.26315 -17.89149 -17.02259 -16.94813 -16.75755 -16.58154 -15.93619 -15.75277 -15.57388 -15.40711 -14.92497 -14.64018 -14.59919 -14.52388 -14.30095 -14.20836 -13.66674 -13.55348 -13.20700 -12.95473 -12.88864 -12.72136 -12.56792 -12.44481 -12.32822 -12.09604 -12.02308 -11.85584 -11.76527 -11.58104 -11.32055 -11.02045 -10.57680 -10.45271 -10.07305 -9.72772 -8.72472 -7.88341 -5.33821 -0.55434 -0.15818 0.97807 1.47298 1.49458 1.60109 1.60637 1.96682 2.42867 2.51380 2.99986 3.26505 3.35614 3.49576 3.62867 3.75268 3.88391 3.96105 4.00849 4.17792 4.29891 4.32236 4.53778 4.55179 4.63988 4.71141 4.74362 4.82563 4.86015 4.91850 4.94381 4.97112 5.05975 5.11032 5.28022 5.32732 5.44113 5.46684 5.49288 5.65268 5.72422 6.37730 6.43111 7.09146 7.13609 7.82723 8.35794 9.18710 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002727 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.116884 B =10265.870341 C =11205.980443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.078 0.922 4 C 0.189 3.811 5 N -0.610 5.610 6 C -0.263 4.263 7 H 0.068 0.932 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.295 1.295 14 C 0.145 3.855 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.058 0.942 18 N -0.699 5.699 19 C 0.553 3.447 20 O -0.569 6.569 21 C -0.173 4.173 22 C -0.045 4.045 23 C -0.058 4.058 24 Cl -0.047 7.047 25 C -0.041 4.041 26 C -0.139 4.139 27 C 0.137 3.863 28 F -0.132 7.132 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.075 0.925 32 H -0.009 1.009 33 H 0.064 0.936 34 H 0.251 0.749 35 H 0.006 0.994 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 10.417 -24.438 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.096 0.904 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.393 4.393 7 H 0.085 0.915 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.796 3.204 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.222 1.222 14 C 0.018 3.982 15 C -0.166 4.166 16 C 0.064 3.936 17 H 0.076 0.924 18 N -0.350 5.350 19 C 0.341 3.659 20 O -0.449 6.449 21 C -0.178 4.178 22 C -0.064 4.064 23 C -0.085 4.085 24 Cl -0.018 7.018 25 C -0.060 4.060 26 C -0.157 4.157 27 C 0.117 3.883 28 F -0.110 7.110 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.009 0.991 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.179 0.821 41 H 0.200 0.800 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.220 9.675 -24.283 27.718 hybrid contribution 0.457 0.079 1.325 1.404 sum -8.763 9.754 -22.958 26.439 Atomic orbital electron populations 1.21692 0.93543 1.01530 1.02377 1.21912 0.96546 1.00070 0.94266 0.90388 1.20607 0.82431 0.95630 0.95095 1.44386 1.02336 1.69815 1.16737 1.19546 0.98136 1.34977 0.86658 0.91466 1.25799 0.99451 1.00253 0.98919 1.70194 1.27191 1.41697 1.18928 0.85201 0.78139 0.78228 0.78821 1.19076 1.21346 1.22200 1.20954 0.96911 0.93814 0.86474 1.22199 0.95238 1.01382 0.97781 1.20724 0.93293 0.96195 0.83349 0.92408 1.45896 1.65083 1.14878 1.09126 1.18337 0.77883 0.86059 0.83655 1.90839 1.51509 1.17420 1.85153 1.19901 1.08902 0.95502 0.93464 1.21216 0.94356 0.91423 0.99428 1.20904 1.04384 0.87604 0.95587 1.98416 1.91089 1.13639 1.98659 1.21496 0.94423 0.92374 0.97660 1.21421 1.00736 0.95461 0.98119 1.18227 0.97154 0.78542 0.94407 1.91573 1.89127 1.33456 1.96831 0.93927 0.92236 0.90616 0.99110 0.91724 0.94017 0.97650 0.92296 0.92256 0.91170 0.75018 0.82112 0.79987 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.03 71.98 0.65 -3.23 16 2 C -0.11 -3.77 2.46 -10.71 -0.03 -3.79 16 3 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 4 C 0.19 8.96 4.59 86.36 0.40 9.36 16 5 N -0.61 -30.85 3.00 -699.10 -2.09 -32.94 16 6 C -0.26 -14.43 9.59 84.03 0.81 -13.63 16 7 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 8 C -0.05 -2.70 4.91 84.86 0.42 -2.29 16 9 N -0.93 -54.93 11.19 21.65 0.24 -54.69 16 10 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.14 6.35 6.52 86.36 0.56 6.91 16 15 C -0.13 -4.55 5.65 30.67 0.17 -4.38 16 16 C 0.17 5.77 1.88 45.02 0.08 5.85 16 17 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 18 N -0.70 -18.44 4.31 -445.41 -1.92 -20.36 16 19 C 0.55 16.28 7.73 86.74 0.67 16.95 16 20 O -0.57 -22.13 15.00 -3.96 -0.06 -22.19 16 21 C -0.17 -3.78 5.88 -20.06 -0.12 -3.90 16 22 C -0.04 -0.67 9.31 22.55 0.21 -0.46 16 23 C -0.06 -0.69 6.31 22.28 0.14 -0.55 16 24 Cl -0.05 -0.52 28.95 -2.72 -0.08 -0.60 16 25 C -0.04 -0.36 9.82 22.33 0.22 -0.14 16 26 C -0.14 -1.64 10.01 22.28 0.22 -1.42 16 27 C 0.14 2.89 7.28 22.67 0.17 3.06 16 28 F -0.13 -3.68 15.55 44.97 0.70 -2.98 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.69 7.36 -2.39 -0.02 1.68 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.06 3.44 6.04 -2.39 -0.01 3.42 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.41 7.98 6.34 -92.71 -0.59 7.39 16 40 H 0.16 1.82 6.40 -2.91 -0.02 1.80 16 41 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 42 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -71.61 360.83 3.86 -67.75 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.47 Total: 11.25 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.57 Total: 8.36 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -3.77 Total: -107.99 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.70 Total: -2.98 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -71.61 3.86 -67.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942368477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.239 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds