Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49556 * 2 1 4 4 C 1.53193 * 109.50053 * 120.06287 * 2 1 3 5 5 N 1.46926 * 108.77778 * 174.58701 * 4 2 1 6 6 C 1.36931 * 120.63162 * 126.37557 * 5 4 2 7 7 H 1.08002 * 119.99748 * 207.68563 * 6 5 4 8 8 C 1.38814 * 120.00050 * 27.67987 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.37477 * 8 6 5 10 10 Si 1.86793 * 120.00044 * 197.37569 * 8 6 5 11 11 H 1.48505 * 109.47339 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47541 * 120.00014 * 10 8 6 13 13 H 1.48504 * 109.47257 * 240.00249 * 10 8 6 14 14 C 1.46932 * 118.73559 * 306.39343 * 5 4 2 15 15 C 1.53191 * 108.77596 * 53.60927 * 14 5 4 16 16 C 1.53035 * 109.33855 * 305.37751 * 15 14 5 17 17 H 1.09000 * 109.48386 * 181.35265 * 16 15 14 18 18 N 1.46496 * 109.43373 * 301.31000 * 16 15 14 19 19 C 1.34775 * 120.00065 * 275.05146 * 18 16 15 20 20 O 1.21561 * 120.00099 * 0.02562 * 19 18 16 21 21 C 1.47696 * 119.99572 * 179.97438 * 19 18 16 22 22 C 1.39650 * 120.16327 * 359.73301 * 21 19 18 23 23 C 1.37978 * 119.86072 * 179.71882 * 22 21 19 24 24 Cl 1.73599 * 119.89838 * 180.27315 * 23 22 21 25 25 C 1.38559 * 120.18989 * 0.55235 * 23 22 21 26 26 C 1.38189 * 120.32982 * 359.71988 * 25 23 22 27 27 C 1.38320 * 120.13436 * 0.02562 * 26 25 23 28 28 F 1.35094 * 120.09864 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46952 * 299.99549 * 1 2 3 30 30 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47009 * 59.99854 * 1 2 3 32 32 H 1.08991 * 109.58689 * 294.38025 * 4 2 1 33 33 H 1.09003 * 109.58367 * 54.65993 * 4 2 1 34 34 H 0.97000 * 120.00280 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58198 * 173.39745 * 14 5 4 36 36 H 1.08996 * 109.59079 * 293.67816 * 14 5 4 37 37 H 1.09005 * 109.49750 * 65.31541 * 15 14 5 38 38 H 1.08993 * 109.49464 * 185.37440 * 15 14 5 39 39 H 0.97005 * 119.99566 * 95.05560 * 18 16 15 40 40 H 1.07996 * 120.07060 * 359.97084 * 22 21 19 41 41 H 1.07997 * 119.83209 * 179.69721 * 25 23 22 42 42 H 1.08004 * 119.93580 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 3.5047 -0.8287 1.1698 6 6 4.2937 -0.3779 2.1942 7 1 5.2989 -0.0385 1.9923 8 6 3.8014 -0.3570 3.4919 9 7 2.7382 -1.0672 3.8040 10 14 4.6480 0.6790 4.7954 11 1 5.8117 1.3781 4.1934 12 1 3.6913 1.6813 5.3297 13 1 5.1139 -0.1982 5.8994 14 6 4.1053 -1.4267 -0.0304 15 6 3.5709 -0.6953 -1.2658 16 6 2.0409 -0.7227 -1.2486 17 1 1.6582 -0.2238 -2.1390 18 7 1.5784 -2.1127 -1.2315 19 6 1.4502 -2.7945 -2.3870 20 8 1.7188 -2.2562 -3.4433 21 6 0.9846 -4.1960 -2.3696 22 6 0.6815 -4.8197 -1.1574 23 6 0.2414 -6.1274 -1.1489 24 17 -0.1425 -6.9014 0.3569 25 6 0.1104 -6.8263 -2.3381 26 6 0.4136 -6.2186 -3.5416 27 6 0.8509 -4.9066 -3.5664 28 9 1.1465 -4.3131 -4.7434 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.7638 -0.1574 2.1389 33 1 1.6034 -1.7203 1.2998 34 1 2.3944 -1.0529 4.7109 35 1 5.1896 -1.3245 0.0141 36 1 3.8397 -2.4824 -0.0848 37 1 3.9159 0.3386 -1.2542 38 1 3.9340 -1.1898 -2.1667 39 1 1.3644 -2.5422 -0.3885 40 1 0.7874 -4.2784 -0.2289 41 1 -0.2299 -7.8512 -2.3243 42 1 0.3088 -6.7692 -4.4648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942368478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -58.291875 kcal Electronic energy + Delta-G solvation = -27945.476518 eV Core-core repulsion = 23865.569204 eV Total energy + Delta-G solvation = -4079.907313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02447 -41.55232 -40.03732 -38.94749 -37.43911 -35.98051 -34.05852 -33.54662 -32.57851 -31.39323 -31.04448 -27.54085 -27.14246 -25.46766 -24.13314 -23.53907 -22.65092 -21.93198 -20.18586 -19.50774 -18.68662 -18.33443 -17.73147 -17.00788 -16.94056 -16.71947 -16.40319 -16.06137 -15.73065 -15.63161 -15.34470 -14.90571 -14.67362 -14.66590 -14.53292 -14.32941 -14.21076 -13.67255 -13.59754 -13.08882 -12.94829 -12.81861 -12.70034 -12.57591 -12.49819 -12.33755 -12.15702 -12.09343 -11.80235 -11.71893 -11.49797 -11.16480 -11.04287 -10.54827 -10.45410 -10.05156 -9.73403 -8.66444 -7.86980 -5.30581 -0.55585 -0.17006 0.97825 1.46427 1.50073 1.59028 1.61344 2.04322 2.42975 2.51951 2.98321 3.28036 3.36368 3.48629 3.66126 3.80345 3.88313 3.96473 4.02506 4.16202 4.31046 4.32850 4.51314 4.56490 4.65094 4.71248 4.73602 4.82881 4.84756 4.93779 4.95020 5.01108 5.07365 5.12010 5.28264 5.33359 5.45155 5.48808 5.55098 5.66232 5.75969 6.40144 6.42137 7.06661 7.16633 7.85938 8.37502 9.18949 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003671 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.597340 B = 7625.990281 C = 8987.369937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.074 0.926 4 C 0.188 3.812 5 N -0.606 5.606 6 C -0.264 4.264 7 H 0.061 0.939 8 C -0.041 4.041 9 N -0.927 5.927 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.289 1.289 13 H -0.293 1.293 14 C 0.149 3.851 15 C -0.135 4.135 16 C 0.166 3.834 17 H 0.080 0.920 18 N -0.699 5.699 19 C 0.555 3.445 20 O -0.565 6.565 21 C -0.174 4.174 22 C -0.051 4.051 23 C -0.059 4.059 24 Cl -0.052 7.052 25 C -0.040 4.040 26 C -0.135 4.135 27 C 0.143 3.857 28 F -0.127 7.127 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.007 0.993 34 H 0.250 0.750 35 H 0.048 0.952 36 H 0.014 0.986 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.404 0.596 40 H 0.143 0.857 41 H 0.185 0.815 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -11.724 -12.229 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 H 0.093 0.907 4 C 0.062 3.938 5 N -0.329 5.329 6 C -0.394 4.394 7 H 0.079 0.921 8 C -0.237 4.237 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.023 3.977 15 C -0.175 4.175 16 C 0.062 3.938 17 H 0.098 0.902 18 N -0.350 5.350 19 C 0.343 3.657 20 O -0.445 6.445 21 C -0.179 4.179 22 C -0.071 4.071 23 C -0.086 4.086 24 Cl -0.023 7.023 25 C -0.058 4.058 26 C -0.154 4.154 27 C 0.122 3.878 28 F -0.105 7.105 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.242 0.758 40 H 0.161 0.839 41 H 0.202 0.798 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.918 -11.364 -12.703 19.237 hybrid contribution 0.574 0.569 1.419 1.633 sum -8.344 -10.795 -11.284 17.706 Atomic orbital electron populations 1.21669 0.93585 1.01902 1.01915 1.21956 0.96563 0.99904 0.95229 0.90727 1.20611 0.82361 0.95991 0.94838 1.44270 1.02271 1.69905 1.16487 1.19474 0.97994 1.35124 0.86777 0.92089 1.25629 0.99379 1.00147 0.98560 1.70136 1.26872 1.41442 1.18833 0.85325 0.78111 0.78456 0.79228 1.19598 1.21605 1.22041 1.20893 0.96322 0.94067 0.86374 1.22245 0.95650 1.01519 0.98045 1.20826 0.93668 0.80891 0.98434 0.90171 1.46019 1.66245 1.14098 1.08642 1.18202 0.77628 0.85908 0.83945 1.90788 1.52041 1.70386 1.31320 1.19943 1.09205 0.94929 0.93796 1.21151 0.94958 0.93904 0.97060 1.20936 1.04956 0.93523 0.89149 1.98417 1.92582 1.80333 1.30976 1.21496 0.94313 1.01653 0.88383 1.21446 1.00895 0.91689 1.01364 1.18109 0.97414 0.92255 0.80003 1.91570 1.90127 1.84212 1.44614 0.92451 0.92713 0.91778 0.92283 0.97497 0.94036 0.93378 0.96801 0.91110 0.92124 0.75760 0.83918 0.79778 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.05 71.98 0.65 -3.20 16 2 C -0.12 -4.04 2.67 -10.71 -0.03 -4.07 16 3 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 4 C 0.19 8.23 4.30 86.36 0.37 8.60 16 5 N -0.61 -29.00 2.99 -699.09 -2.09 -31.09 16 6 C -0.26 -14.09 9.58 84.04 0.81 -13.28 16 7 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 8 C -0.04 -2.21 4.91 84.86 0.42 -1.79 16 9 N -0.93 -51.96 11.19 21.65 0.24 -51.72 16 10 Si 0.96 43.78 29.59 68.60 2.03 45.81 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 14 C 0.15 6.17 6.26 86.36 0.54 6.71 16 15 C -0.13 -4.81 5.77 30.67 0.18 -4.63 16 16 C 0.17 5.56 2.21 45.02 0.10 5.66 16 17 H 0.08 2.68 7.58 -2.39 -0.02 2.67 16 18 N -0.70 -22.00 3.55 -445.45 -1.58 -23.58 16 19 C 0.56 17.94 7.73 86.74 0.67 18.61 16 20 O -0.56 -21.69 15.00 -3.91 -0.06 -21.75 16 21 C -0.17 -4.58 5.88 -20.05 -0.12 -4.69 16 22 C -0.05 -1.15 9.31 22.55 0.21 -0.94 16 23 C -0.06 -1.07 6.31 22.28 0.14 -0.93 16 24 Cl -0.05 -0.97 28.95 -2.72 -0.08 -1.05 16 25 C -0.04 -0.51 9.82 22.33 0.22 -0.29 16 26 C -0.14 -1.94 10.01 22.28 0.22 -1.71 16 27 C 0.14 3.34 7.29 22.67 0.17 3.51 16 28 F -0.13 -3.61 15.55 44.97 0.70 -2.91 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.52 7.53 -2.39 -0.02 1.50 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 3.00 6.03 -2.39 -0.01 2.99 16 33 H 0.01 0.32 6.65 -2.39 -0.02 0.30 16 34 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.05 2.00 7.93 -2.39 -0.02 1.99 16 36 H 0.01 0.59 7.75 -2.39 -0.02 0.57 16 37 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.40 12.48 4.77 -92.70 -0.44 12.04 16 40 H 0.14 3.32 6.41 -2.91 -0.02 3.30 16 41 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -65.13 356.91 4.32 -60.81 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.62 Total: 17.92 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.54 Total: 7.56 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.43 Total: -106.39 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.70 Total: -2.91 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -65.13 4.32 -60.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942368478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.515 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds