Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49581 * 2 1 4 4 C 1.53188 * 109.50171 * 239.90113 * 2 1 3 5 5 N 1.46922 * 108.77760 * 185.41117 * 4 2 1 6 6 C 1.36940 * 120.63319 * 233.58500 * 5 4 2 7 7 H 1.08003 * 119.99945 * 152.59856 * 6 5 4 8 8 C 1.38809 * 119.99937 * 332.60322 * 6 5 4 9 9 N 1.31610 * 120.00248 * 159.31061 * 8 6 5 10 10 Si 1.86802 * 119.99942 * 339.30825 * 8 6 5 11 11 H 1.48502 * 109.47046 * 92.95081 * 10 8 6 12 12 H 1.48505 * 109.47177 * 212.95069 * 10 8 6 13 13 H 1.48494 * 109.47132 * 332.95508 * 10 8 6 14 14 C 1.46927 * 118.73633 * 53.60832 * 5 4 2 15 15 C 1.53185 * 108.77817 * 306.39197 * 14 5 4 16 16 C 1.53038 * 109.49841 * 120.05980 * 2 1 3 17 17 H 1.08999 * 109.46323 * 301.32746 * 16 2 1 18 18 N 1.46499 * 109.45845 * 61.29716 * 16 2 1 19 19 C 1.34779 * 120.00468 * 204.99774 * 18 16 2 20 20 O 1.21572 * 119.99470 * 0.02562 * 19 18 16 21 21 C 1.47692 * 120.00544 * 180.02562 * 19 18 16 22 22 C 1.39672 * 120.15598 * 359.97438 * 21 19 18 23 23 C 1.37853 * 119.90113 * 180.02562 * 22 21 19 24 24 C 1.38458 * 120.22726 * 0.02562 * 23 22 21 25 25 C 1.38294 * 120.32897 * 359.95301 * 24 23 22 26 26 Cl 1.73599 * 119.95488 * 180.02562 * 25 24 23 27 27 C 1.38441 * 120.09133 * 0.04750 * 25 24 23 28 28 F 1.35101 * 120.10978 * 180.25062 * 27 25 24 29 29 H 1.09000 * 109.47631 * 299.93780 * 1 2 3 30 30 H 1.08999 * 109.47444 * 59.93863 * 1 2 3 31 31 H 1.09001 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.58462 * 305.20416 * 4 2 1 33 33 H 1.09002 * 109.58756 * 65.62361 * 4 2 1 34 34 H 0.96997 * 120.00571 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.58926 * 66.17993 * 14 5 4 36 36 H 1.09003 * 109.58768 * 186.60337 * 14 5 4 37 37 H 1.09003 * 109.49735 * 294.68661 * 15 14 5 38 38 H 1.08996 * 109.50009 * 174.58901 * 15 14 5 39 39 H 0.96998 * 119.99955 * 25.00556 * 18 16 2 40 40 H 1.07998 * 120.05257 * 0.03671 * 22 21 19 41 41 H 1.08003 * 119.88604 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.83159 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7242 -1.2493 5 7 3.5046 -0.8294 -1.1692 6 6 4.2936 -0.3799 -2.1943 7 1 5.3005 -0.0445 -1.9936 8 6 3.7993 -0.3552 -3.4911 9 7 4.3572 0.4239 -4.3933 10 14 2.3424 -1.4279 -3.9559 11 1 1.0858 -0.6534 -3.7939 12 1 2.4779 -1.8615 -5.3698 13 1 2.3052 -2.6217 -3.0735 14 6 4.1053 -1.4265 0.0313 15 6 3.5708 -0.6945 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6583 -0.2236 2.1390 18 7 1.5783 -2.1126 1.2315 19 6 1.4502 -2.7945 2.3870 20 8 1.7180 -2.2559 3.4435 21 6 0.9845 -4.1960 2.3697 22 6 0.6754 -4.8178 1.1579 23 6 0.2407 -6.1260 1.1479 24 6 0.1088 -6.8257 2.3354 25 6 0.4127 -6.2194 3.5406 26 17 0.2444 -7.1061 5.0236 27 6 0.8504 -4.9063 3.5662 28 9 1.1521 -4.3153 4.7430 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7219 -1.2974 33 1 1.7638 -0.1586 -2.1388 34 1 4.0116 0.4414 -5.2995 35 1 3.8376 -2.4817 0.0877 36 1 5.1896 -1.3244 -0.0131 37 1 3.9158 0.3394 1.2540 38 1 3.9334 -1.1889 2.1675 39 1 1.3644 -2.5422 0.3886 40 1 0.7770 -4.2747 0.2299 41 1 0.0014 -6.6064 0.2107 42 1 -0.2327 -7.8502 2.3202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942594202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -53.590433 kcal Electronic energy + Delta-G solvation = -28021.921770 eV Core-core repulsion = 23942.218326 eV Total energy + Delta-G solvation = -4079.703444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.08284 -41.61310 -40.09242 -39.05402 -37.61594 -36.06665 -34.11530 -33.65613 -32.72071 -31.60693 -31.36411 -27.64375 -27.17443 -25.47614 -24.26198 -23.70387 -22.56780 -22.06241 -20.41741 -19.56800 -18.78968 -18.33998 -17.78049 -17.27913 -17.07107 -16.72789 -16.50728 -16.09765 -15.89165 -15.72295 -15.32835 -15.09367 -14.96910 -14.75798 -14.44987 -14.35879 -14.08519 -13.87867 -13.55548 -13.41337 -13.10334 -12.99242 -12.74537 -12.63397 -12.59220 -12.28637 -12.18770 -12.09100 -11.95502 -11.63881 -11.52748 -11.29739 -11.07615 -10.62893 -10.31921 -10.02902 -9.87436 -8.91647 -8.12695 -5.46432 -0.53284 -0.18282 0.83116 1.34273 1.45781 1.55966 1.63680 2.00639 2.46162 2.46719 2.87701 3.06424 3.32601 3.39073 3.62736 3.70989 3.75999 3.93164 4.00145 4.05619 4.23593 4.26744 4.39516 4.52108 4.58829 4.65705 4.69278 4.73353 4.84435 4.86646 4.93703 4.99635 5.01661 5.07829 5.10667 5.21883 5.27712 5.33946 5.48256 5.52732 5.88932 6.15344 6.40543 6.93013 7.07079 7.63649 8.02889 9.07212 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.003284 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.311494 B = 8523.737778 C = 9190.235922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.128 3.872 5 N -0.615 5.615 6 C -0.252 4.252 7 H 0.044 0.956 8 C -0.039 4.039 9 N -0.961 5.961 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.316 1.316 13 H -0.245 1.245 14 C 0.152 3.848 15 C -0.139 4.139 16 C 0.168 3.832 17 H 0.083 0.917 18 N -0.698 5.698 19 C 0.557 3.443 20 O -0.567 6.567 21 C -0.175 4.175 22 C -0.050 4.050 23 C -0.107 4.107 24 C -0.045 4.045 25 C -0.094 4.094 26 Cl -0.047 7.047 27 C 0.138 3.862 28 F -0.126 7.126 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.261 0.739 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.407 0.593 40 H 0.159 0.841 41 H 0.187 0.813 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -16.568 12.500 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.095 0.905 4 C 0.003 3.997 5 N -0.339 5.339 6 C -0.381 4.381 7 H 0.062 0.938 8 C -0.234 4.234 9 N -0.606 5.606 10 Si 0.777 3.223 11 H -0.195 1.195 12 H -0.245 1.245 13 H -0.169 1.169 14 C 0.027 3.973 15 C -0.179 4.179 16 C 0.063 3.937 17 H 0.101 0.899 18 N -0.350 5.350 19 C 0.345 3.655 20 O -0.447 6.447 21 C -0.180 4.180 22 C -0.069 4.069 23 C -0.125 4.125 24 C -0.063 4.063 25 C -0.122 4.122 26 Cl -0.018 7.018 27 C 0.116 3.884 28 F -0.104 7.104 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.246 0.754 40 H 0.176 0.824 41 H 0.205 0.795 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.250 -16.169 13.281 25.316 hybrid contribution 0.120 0.094 -0.442 0.468 sum -14.130 -16.076 12.839 24.958 Atomic orbital electron populations 1.21764 0.92863 1.02729 1.02456 1.21828 0.97030 1.00023 0.94171 0.90462 1.21469 0.83417 0.97804 0.96999 1.44408 1.01479 1.70685 1.17341 1.18805 0.97633 1.35082 0.86600 0.93802 1.26007 1.01939 0.99926 0.95490 1.69991 1.46118 1.39971 1.04561 0.85871 0.79539 0.81014 0.75899 1.19527 1.24538 1.16854 1.20943 0.96577 0.94775 0.85030 1.22268 0.95813 1.01543 0.98249 1.20782 0.93451 0.81024 0.98401 0.89889 1.45906 1.66678 1.13855 1.08606 1.18194 0.77495 0.85885 0.83920 1.90815 1.51737 1.70491 1.31630 1.19993 1.09314 0.94836 0.93831 1.21690 0.93203 0.96036 0.95972 1.21627 0.98020 0.93012 0.99804 1.21651 0.94100 1.01985 0.88601 1.21105 1.08793 0.91278 0.91020 1.98398 1.96284 1.74100 1.33052 1.17726 0.98881 0.90532 0.81232 1.91569 1.90028 1.83973 1.44870 0.91556 0.92124 0.91555 0.93941 0.92687 0.93017 0.94510 0.93269 0.91520 0.91754 0.75437 0.82372 0.79542 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.05 71.98 0.65 -2.63 16 2 C -0.11 -3.29 2.67 -10.72 -0.03 -3.32 16 3 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 4 C 0.13 4.68 3.19 86.36 0.28 4.95 16 5 N -0.61 -26.71 2.77 -699.12 -1.94 -28.64 16 6 C -0.25 -13.73 10.03 84.03 0.84 -12.89 16 7 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 8 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 9 N -0.96 -58.94 13.97 21.65 0.30 -58.64 16 10 Si 0.95 42.36 24.35 68.60 1.67 44.03 16 11 H -0.27 -11.11 6.62 99.48 0.66 -10.45 16 12 H -0.32 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.25 -9.72 6.64 99.48 0.66 -9.06 16 14 C 0.15 5.63 6.26 86.36 0.54 6.17 16 15 C -0.14 -4.54 5.77 30.67 0.18 -4.36 16 16 C 0.17 4.90 2.21 45.02 0.10 5.00 16 17 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 18 N -0.70 -17.95 3.55 -445.43 -1.58 -19.53 16 19 C 0.56 15.84 7.73 86.74 0.67 16.51 16 20 O -0.57 -20.58 15.00 -3.94 -0.06 -20.64 16 21 C -0.18 -3.97 5.88 -20.06 -0.12 -4.09 16 22 C -0.05 -0.72 9.54 22.53 0.21 -0.51 16 23 C -0.11 -0.94 10.03 22.23 0.22 -0.72 16 24 C -0.04 -0.47 9.82 22.34 0.22 -0.25 16 25 C -0.09 -1.69 6.32 22.33 0.14 -1.55 16 26 Cl -0.05 -0.84 28.61 -2.72 -0.08 -0.92 16 27 C 0.14 3.34 7.26 22.69 0.16 3.50 16 28 F -0.13 -3.87 15.12 44.97 0.68 -3.19 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.34 7.53 -2.39 -0.02 1.32 16 32 H 0.04 1.36 5.57 -2.39 -0.01 1.35 16 33 H 0.05 2.29 4.50 -2.39 -0.01 2.28 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.04 1.27 7.74 -2.39 -0.02 1.25 16 36 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 9.01 4.76 -92.71 -0.44 8.57 16 40 H 0.16 1.75 6.40 -2.91 -0.02 1.73 16 41 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -72.52 349.93 4.05 -68.47 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.53 Total: 14.98 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.52 Total: 4.08 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.21 Total: -106.81 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.68 Total: -3.19 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -72.52 4.05 -68.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.881 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds