Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50196 * 2 1 4 4 C 1.52773 * 109.56265 * 240.03534 * 2 1 3 5 5 N 1.46930 * 109.00705 * 185.55464 * 4 2 1 6 6 C 1.36934 * 120.62418 * 233.58429 * 5 4 2 7 7 H 1.08005 * 120.00047 * 153.10461 * 6 5 4 8 8 C 1.38811 * 120.00274 * 333.09970 * 6 5 4 9 9 N 1.31619 * 120.00315 * 158.91624 * 8 6 5 10 10 Si 1.86800 * 119.99967 * 339.18787 * 8 6 5 11 11 H 1.48505 * 109.47007 * 95.07192 * 10 8 6 12 12 H 1.48498 * 109.47311 * 215.07148 * 10 8 6 13 13 H 1.48497 * 109.47145 * 335.07461 * 10 8 6 14 14 C 1.46921 * 118.74090 * 53.30295 * 5 4 2 15 15 C 1.53192 * 108.77951 * 306.64532 * 14 5 4 16 16 C 1.53041 * 109.50128 * 120.07107 * 2 1 3 17 17 H 1.08998 * 109.46245 * 61.29462 * 16 2 1 18 18 N 1.46503 * 109.45521 * 301.33102 * 16 2 1 19 19 C 1.34779 * 119.99737 * 154.93010 * 18 16 2 20 20 O 1.21579 * 119.99880 * 0.02562 * 19 18 16 21 21 C 1.47695 * 120.00066 * 180.02562 * 19 18 16 22 22 C 1.39674 * 120.15894 * 359.72565 * 21 19 18 23 23 C 1.37849 * 119.89736 * 179.69804 * 22 21 19 24 24 C 1.38447 * 120.23179 * 0.57964 * 23 22 21 25 25 C 1.38295 * 120.32998 * 359.72118 * 24 23 22 26 26 Cl 1.73596 * 119.95726 * 180.02562 * 25 24 23 27 27 C 1.38436 * 120.09196 * 359.97248 * 25 24 23 28 28 F 1.35097 * 120.11884 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.46652 * 299.93233 * 1 2 3 30 30 H 1.08997 * 109.47129 * 59.93189 * 1 2 3 31 31 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.51108 * 65.66817 * 4 2 1 33 33 H 1.08998 * 109.42635 * 305.38490 * 4 2 1 34 34 H 0.96991 * 120.00545 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.58652 * 66.43404 * 14 5 4 36 36 H 1.09004 * 109.58794 * 186.71460 * 14 5 4 37 37 H 1.08996 * 109.49999 * 174.58238 * 15 14 5 38 38 H 1.08991 * 109.49705 * 294.65295 * 15 14 5 39 39 H 0.96996 * 120.00577 * 334.93683 * 18 16 2 40 40 H 1.07999 * 120.05054 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.88318 * 180.30117 * 23 22 21 42 42 H 1.08007 * 119.83646 * 179.69772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7190 -1.2471 5 7 3.5046 -0.8295 -1.1695 6 6 4.2935 -0.3790 -2.1941 7 1 5.3045 -0.0554 -1.9951 8 6 3.7939 -0.3384 -3.4886 9 7 4.3506 0.4488 -4.3845 10 14 2.3265 -1.3953 -3.9570 11 1 1.0809 -0.5964 -3.8315 12 1 2.4780 -1.8589 -5.3596 13 1 2.2540 -2.5705 -3.0522 14 6 4.1053 -1.4267 0.0309 15 6 3.5709 -0.6947 1.2660 16 6 2.0409 -0.7229 1.2484 17 1 1.6968 -1.7570 1.2356 18 7 1.5267 -0.0524 2.4453 19 6 1.3973 -0.7377 3.5985 20 8 1.7078 -1.9123 3.6457 21 6 0.8784 -0.0620 4.8050 22 6 0.5261 1.2887 4.7560 23 6 0.0365 1.9124 5.8836 24 6 -0.0961 1.2078 7.0679 25 6 0.2557 -0.1283 7.1288 26 17 0.0849 -1.0026 8.6187 27 6 0.7429 -0.7697 6.0029 28 9 1.0873 -2.0747 6.0619 29 1 -0.3632 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7645 -0.1501 -2.1346 33 1 1.6020 -1.7152 -1.2971 34 1 4.0013 0.4775 -5.2889 35 1 3.8376 -2.4818 0.0872 36 1 5.1898 -1.3269 -0.0148 37 1 3.9335 -1.1892 2.1672 38 1 3.9164 0.3389 1.2541 39 1 1.2792 0.8848 2.4077 40 1 0.6322 1.8422 3.8347 41 1 -0.2404 2.9555 5.8441 42 1 -0.4758 1.7041 7.9489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942594203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -36.268772 kcal Electronic energy + Delta-G solvation = -27393.999613 eV Core-core repulsion = 23315.047293 eV Total energy + Delta-G solvation = -4078.952320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.19206 -40.46596 -39.10956 -37.85063 -36.94055 -34.80014 -32.81408 -32.06771 -31.60306 -30.95424 -29.92634 -26.34082 -25.52762 -24.25837 -23.20203 -22.55531 -20.95491 -20.68838 -19.82624 -18.53524 -17.50385 -17.17951 -16.74551 -16.18437 -15.96548 -15.89038 -15.13659 -15.01345 -14.76883 -14.34382 -14.07049 -13.73262 -13.66250 -13.43429 -13.33933 -13.25328 -12.82454 -12.64649 -12.40458 -12.12759 -12.03961 -11.90839 -11.68114 -11.52603 -11.50390 -10.93734 -10.71405 -10.54964 -10.34328 -10.16398 -9.96018 -9.74397 -9.57894 -9.48308 -9.22272 -8.88987 -8.66352 -7.02891 -5.97695 -3.33176 0.14017 0.44812 1.48547 2.43700 2.98049 3.25470 3.29025 3.47501 3.50528 3.57623 4.13930 4.19950 4.37833 4.50342 4.56193 4.83403 4.88084 4.99251 5.23727 5.27082 5.29333 5.31889 5.41374 5.44997 5.61557 5.65233 5.82695 5.84579 5.98281 6.03370 6.06470 6.09301 6.22880 6.33381 6.34958 6.56115 6.60302 6.65662 6.67360 6.88931 7.43079 7.92277 8.10796 8.29886 8.90701 9.68995 10.06092 11.18149 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.002540 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.342424 B =11021.184776 C =11287.894841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.087 0.913 8 C 0.023 3.977 9 N -0.908 5.908 10 Si 0.879 3.121 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.157 3.843 17 H 0.086 0.914 18 N -0.712 5.712 19 C 0.554 3.446 20 O -0.520 6.520 21 C -0.157 4.157 22 C -0.054 4.054 23 C -0.125 4.125 24 C -0.060 4.060 25 C -0.088 4.088 26 Cl -0.044 7.044 27 C 0.168 3.832 28 F -0.100 7.100 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.930 4.903 23.757 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.024 3.976 15 C -0.183 4.183 16 C 0.054 3.946 17 H 0.104 0.896 18 N -0.363 5.363 19 C 0.340 3.660 20 O -0.397 6.397 21 C -0.161 4.161 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.079 4.079 25 C -0.116 4.116 26 Cl -0.015 7.015 27 C 0.147 3.853 28 F -0.078 7.078 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.649 3.946 23.708 26.709 hybrid contribution -0.937 -0.301 -0.215 1.008 sum -12.586 3.644 23.494 26.901 Atomic orbital electron populations 1.21804 0.95518 1.01802 1.01220 1.21921 0.94899 1.01093 0.95728 0.90298 1.21287 0.84989 0.97344 0.95440 1.44399 1.00631 1.70045 1.17836 1.18930 0.98203 1.36332 0.85293 0.89577 1.25266 0.97984 0.98634 0.95671 1.69836 1.43244 1.37418 1.04545 0.87004 0.82642 0.82458 0.77008 1.21647 1.23113 1.19338 1.20898 0.97403 0.94217 0.85056 1.22402 0.94329 1.01906 0.99638 1.21090 0.94167 0.97236 0.82123 0.89587 1.46128 1.65743 1.14289 1.10157 1.17843 0.78834 0.86559 0.82801 1.90870 1.49182 1.15277 1.84344 1.20180 1.06873 0.95279 0.93798 1.21395 0.94139 0.92183 0.99559 1.21144 1.00472 1.01085 0.91678 1.21185 0.96303 0.90929 0.99486 1.20951 1.07946 0.94472 0.88194 1.98404 1.96274 1.75923 1.30867 1.17398 0.96390 0.79489 0.92042 1.91651 1.88430 1.31177 1.96536 0.93203 0.92359 0.92803 0.90543 0.95389 0.92760 0.95611 0.91486 0.92081 0.91713 0.76899 0.83839 0.83545 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.03 37.16 0.34 -1.61 16 2 C -0.12 -1.86 2.44 -90.72 -0.22 -2.08 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.14 2.84 3.45 -3.92 -0.01 2.83 16 5 N -0.61 -14.06 2.78 -172.57 -0.48 -14.54 16 6 C -0.26 -7.11 10.04 -15.06 -0.15 -7.26 16 7 H 0.09 2.52 8.05 -52.48 -0.42 2.10 16 8 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 9 N -0.91 -27.41 13.97 55.49 0.78 -26.63 16 10 Si 0.88 22.01 24.36 -169.99 -4.14 17.87 16 11 H -0.29 -6.90 6.70 56.52 0.38 -6.52 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 13 H -0.27 -6.65 6.48 56.52 0.37 -6.28 16 14 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 15 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 16 C 0.16 2.44 1.88 -67.89 -0.13 2.32 16 17 H 0.09 1.51 7.57 -51.93 -0.39 1.12 16 18 N -0.71 -8.81 4.31 -54.75 -0.24 -9.05 16 19 C 0.55 7.71 7.73 -12.40 -0.10 7.61 16 20 O -0.52 -9.41 15.00 5.30 0.08 -9.33 16 21 C -0.16 -1.71 5.88 -104.91 -0.62 -2.32 16 22 C -0.05 -0.38 9.54 -39.19 -0.37 -0.75 16 23 C -0.13 -0.65 10.03 -39.65 -0.40 -1.05 16 24 C -0.06 -0.37 9.82 -39.48 -0.39 -0.76 16 25 C -0.09 -0.80 6.32 -39.49 -0.25 -1.05 16 26 Cl -0.04 -0.39 28.61 -51.86 -1.48 -1.88 16 27 C 0.17 1.97 7.26 -38.93 -0.28 1.69 16 28 F -0.10 -1.46 15.12 2.25 0.03 -1.42 16 29 H 0.05 0.54 7.36 -51.93 -0.38 0.15 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.75 4.49 -51.93 -0.23 1.52 16 33 H 0.03 0.60 7.01 -51.93 -0.36 0.23 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 3.65 6.34 -40.82 -0.26 3.40 16 40 H 0.14 0.66 6.40 -52.49 -0.34 0.32 16 41 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -33.14 353.70 -8.35 -41.49 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.38 Total: -0.40 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.85 Total: -1.44 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.06 Total: -50.22 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.14 -8.35 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.221 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds