Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50196 * 2 1 4 4 C 1.52773 * 109.56265 * 240.03534 * 2 1 3 5 5 N 1.46930 * 109.00705 * 185.55464 * 4 2 1 6 6 C 1.36934 * 120.62418 * 233.58429 * 5 4 2 7 7 H 1.08005 * 120.00047 * 153.10461 * 6 5 4 8 8 C 1.38811 * 120.00274 * 333.09970 * 6 5 4 9 9 N 1.31619 * 120.00315 * 158.91624 * 8 6 5 10 10 Si 1.86800 * 119.99967 * 339.18787 * 8 6 5 11 11 H 1.48505 * 109.47007 * 95.07192 * 10 8 6 12 12 H 1.48498 * 109.47311 * 215.07148 * 10 8 6 13 13 H 1.48497 * 109.47145 * 335.07461 * 10 8 6 14 14 C 1.46921 * 118.74090 * 53.30295 * 5 4 2 15 15 C 1.53192 * 108.77951 * 306.64532 * 14 5 4 16 16 C 1.53041 * 109.50128 * 120.07107 * 2 1 3 17 17 H 1.08998 * 109.46245 * 61.29462 * 16 2 1 18 18 N 1.46503 * 109.45521 * 301.33102 * 16 2 1 19 19 C 1.34779 * 119.99737 * 154.93010 * 18 16 2 20 20 O 1.21579 * 119.99880 * 0.02562 * 19 18 16 21 21 C 1.47695 * 120.00066 * 180.02562 * 19 18 16 22 22 C 1.39674 * 120.15894 * 359.72565 * 21 19 18 23 23 C 1.37849 * 119.89736 * 179.69804 * 22 21 19 24 24 C 1.38447 * 120.23179 * 0.57964 * 23 22 21 25 25 C 1.38295 * 120.32998 * 359.72118 * 24 23 22 26 26 Cl 1.73596 * 119.95726 * 180.02562 * 25 24 23 27 27 C 1.38436 * 120.09196 * 359.97248 * 25 24 23 28 28 F 1.35097 * 120.11884 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.46652 * 299.93233 * 1 2 3 30 30 H 1.08997 * 109.47129 * 59.93189 * 1 2 3 31 31 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.51108 * 65.66817 * 4 2 1 33 33 H 1.08998 * 109.42635 * 305.38490 * 4 2 1 34 34 H 0.96991 * 120.00545 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.58652 * 66.43404 * 14 5 4 36 36 H 1.09004 * 109.58794 * 186.71460 * 14 5 4 37 37 H 1.08996 * 109.49999 * 174.58238 * 15 14 5 38 38 H 1.08991 * 109.49705 * 294.65295 * 15 14 5 39 39 H 0.96996 * 120.00577 * 334.93683 * 18 16 2 40 40 H 1.07999 * 120.05054 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.88318 * 180.30117 * 23 22 21 42 42 H 1.08007 * 119.83646 * 179.69772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7190 -1.2471 5 7 3.5046 -0.8295 -1.1695 6 6 4.2935 -0.3790 -2.1941 7 1 5.3045 -0.0554 -1.9951 8 6 3.7939 -0.3384 -3.4886 9 7 4.3506 0.4488 -4.3845 10 14 2.3265 -1.3953 -3.9570 11 1 1.0809 -0.5964 -3.8315 12 1 2.4780 -1.8589 -5.3596 13 1 2.2540 -2.5705 -3.0522 14 6 4.1053 -1.4267 0.0309 15 6 3.5709 -0.6947 1.2660 16 6 2.0409 -0.7229 1.2484 17 1 1.6968 -1.7570 1.2356 18 7 1.5267 -0.0524 2.4453 19 6 1.3973 -0.7377 3.5985 20 8 1.7078 -1.9123 3.6457 21 6 0.8784 -0.0620 4.8050 22 6 0.5261 1.2887 4.7560 23 6 0.0365 1.9124 5.8836 24 6 -0.0961 1.2078 7.0679 25 6 0.2557 -0.1283 7.1288 26 17 0.0849 -1.0026 8.6187 27 6 0.7429 -0.7697 6.0029 28 9 1.0873 -2.0747 6.0619 29 1 -0.3632 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7645 -0.1501 -2.1346 33 1 1.6020 -1.7152 -1.2971 34 1 4.0013 0.4775 -5.2889 35 1 3.8376 -2.4818 0.0872 36 1 5.1898 -1.3269 -0.0148 37 1 3.9335 -1.1892 2.1672 38 1 3.9164 0.3389 1.2541 39 1 1.2792 0.8848 2.4077 40 1 0.6322 1.8422 3.8347 41 1 -0.2404 2.9555 5.8441 42 1 -0.4758 1.7041 7.9489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942594203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -57.696984 kcal Electronic energy + Delta-G solvation = -27394.928810 eV Core-core repulsion = 23315.047293 eV Total energy + Delta-G solvation = -4079.881517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07926 -41.48126 -40.03800 -39.11444 -37.60696 -36.30877 -34.28183 -33.64950 -32.71644 -31.57962 -31.33217 -27.70182 -27.07907 -25.36163 -24.23524 -23.61900 -22.45601 -21.73106 -21.26169 -19.50343 -18.79273 -18.22245 -17.95937 -17.33030 -17.06445 -16.70799 -16.54194 -16.09308 -15.92257 -15.68860 -15.29353 -15.11495 -14.89018 -14.69799 -14.43238 -14.36943 -14.07846 -14.06955 -13.47902 -13.39927 -13.23619 -13.00402 -12.72091 -12.61200 -12.53778 -12.36011 -12.18303 -12.07350 -11.97063 -11.74383 -11.52762 -11.33610 -11.10820 -10.69844 -10.30946 -10.01403 -9.85400 -8.98717 -8.16828 -5.48628 -0.51394 -0.15840 0.84978 1.28039 1.42170 1.50260 1.64662 1.96467 2.40500 2.48658 2.90133 3.03475 3.28618 3.40710 3.60670 3.72373 3.78014 3.91522 4.02123 4.08868 4.25127 4.29228 4.43806 4.51895 4.58473 4.68175 4.72340 4.73943 4.78712 4.86669 4.94220 4.97546 4.99401 5.05498 5.11199 5.19324 5.28305 5.37960 5.46257 5.53659 5.85510 6.12067 6.44579 6.89172 7.11089 7.60171 8.00615 9.02808 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.002540 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.342424 B =11021.184776 C =11287.894841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.084 0.916 4 C 0.129 3.871 5 N -0.618 5.618 6 C -0.248 4.248 7 H 0.055 0.945 8 C -0.031 4.031 9 N -0.954 5.954 10 Si 0.939 3.061 11 H -0.268 1.268 12 H -0.312 1.312 13 H -0.267 1.267 14 C 0.147 3.853 15 C -0.130 4.130 16 C 0.167 3.833 17 H 0.066 0.934 18 N -0.696 5.696 19 C 0.554 3.446 20 O -0.571 6.571 21 C -0.176 4.176 22 C -0.044 4.044 23 C -0.106 4.106 24 C -0.047 4.047 25 C -0.097 4.097 26 Cl -0.051 7.051 27 C 0.132 3.868 28 F -0.130 7.130 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.173 0.827 41 H 0.192 0.808 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 7.383 25.811 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.103 0.897 4 C 0.003 3.997 5 N -0.343 5.343 6 C -0.377 4.377 7 H 0.073 0.927 8 C -0.226 4.226 9 N -0.600 5.600 10 Si 0.768 3.232 11 H -0.194 1.194 12 H -0.241 1.241 13 H -0.191 1.191 14 C 0.021 3.979 15 C -0.170 4.170 16 C 0.063 3.937 17 H 0.085 0.915 18 N -0.348 5.348 19 C 0.342 3.658 20 O -0.452 6.452 21 C -0.180 4.180 22 C -0.062 4.062 23 C -0.123 4.123 24 C -0.065 4.065 25 C -0.125 4.125 26 Cl -0.022 7.022 27 C 0.111 3.889 28 F -0.108 7.108 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.254 0.746 40 H 0.190 0.810 41 H 0.209 0.791 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.421 6.457 25.811 30.263 hybrid contribution -0.035 -1.002 -0.737 1.244 sum -14.456 5.456 25.074 29.452 Atomic orbital electron populations 1.21792 0.92848 1.02190 1.03097 1.21715 0.96993 1.00390 0.93302 0.89733 1.21343 0.83482 0.97552 0.97276 1.44505 1.01568 1.70514 1.17664 1.18866 0.97512 1.34814 0.86535 0.92713 1.25828 1.01196 0.99842 0.95697 1.69950 1.45657 1.39413 1.04945 0.86022 0.80527 0.80849 0.75797 1.19413 1.24138 1.19144 1.20999 0.97182 0.94485 0.85213 1.22218 0.95431 1.01535 0.97798 1.20722 0.93096 0.96605 0.83304 0.91546 1.45785 1.65177 1.15006 1.08789 1.18319 0.77814 0.86017 0.83692 1.90845 1.51445 1.17677 1.85184 1.19999 1.09082 0.96887 0.92046 1.21777 0.92586 0.90302 1.01543 1.21668 0.97844 1.02715 0.90099 1.21678 0.94263 0.89416 1.01187 1.21135 1.08502 0.95564 0.87263 1.98400 1.96320 1.76486 1.31021 1.17837 0.98609 0.78818 0.93645 1.91567 1.89164 1.33300 1.96777 0.89870 0.91979 0.93213 0.92330 0.95569 0.92880 0.95647 0.92162 0.91887 0.91246 0.74613 0.80954 0.79098 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.03 71.98 0.65 -2.65 16 2 C -0.10 -3.10 2.44 -10.86 -0.03 -3.13 16 3 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.13 5.25 3.45 86.22 0.30 5.55 16 5 N -0.62 -28.80 2.78 -699.90 -1.95 -30.74 16 6 C -0.25 -13.89 10.04 84.03 0.84 -13.05 16 7 H 0.06 3.35 8.05 -2.91 -0.02 3.32 16 8 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 9 N -0.95 -59.06 13.97 21.65 0.30 -58.76 16 10 Si 0.94 46.02 24.36 68.60 1.67 47.70 16 11 H -0.27 -12.10 6.70 99.48 0.67 -11.43 16 12 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 13 H -0.27 -12.82 6.48 99.48 0.64 -12.17 16 14 C 0.15 5.87 6.52 86.36 0.56 6.43 16 15 C -0.13 -4.26 5.65 30.67 0.17 -4.08 16 16 C 0.17 4.95 1.88 45.02 0.08 5.04 16 17 H 0.07 2.29 7.57 -2.39 -0.02 2.27 16 18 N -0.70 -15.46 4.31 -445.40 -1.92 -17.38 16 19 C 0.55 14.78 7.73 86.74 0.67 15.45 16 20 O -0.57 -21.06 15.00 -3.96 -0.06 -21.12 16 21 C -0.18 -3.48 5.88 -20.05 -0.12 -3.60 16 22 C -0.04 -0.41 9.54 22.52 0.21 -0.19 16 23 C -0.11 -0.48 10.03 22.23 0.22 -0.26 16 24 C -0.05 -0.37 9.82 22.33 0.22 -0.15 16 25 C -0.10 -1.59 6.32 22.33 0.14 -1.45 16 26 Cl -0.05 -0.88 28.61 -2.72 -0.08 -0.95 16 27 C 0.13 3.02 7.26 22.69 0.16 3.19 16 28 F -0.13 -3.97 15.12 44.97 0.68 -3.29 16 29 H 0.08 1.39 7.36 -2.39 -0.02 1.38 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 2.61 4.49 -2.39 -0.01 2.59 16 33 H 0.03 1.09 7.01 -2.39 -0.02 1.07 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.42 5.91 6.34 -92.71 -0.59 5.32 16 40 H 0.17 0.53 6.40 -2.91 -0.02 0.51 16 41 H 0.19 -0.68 8.06 -2.91 -0.02 -0.70 16 42 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -77.49 353.70 3.56 -73.92 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.37 Total: 4.84 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.54 Total: 5.78 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.57 Total: -106.88 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.68 Total: -3.29 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.70 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -77.49 3.56 -73.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.226 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds