Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.52241 * 2 1 4 4 C 1.53194 * 109.49893 * 120.07846 * 2 1 3 5 5 N 1.46928 * 108.77452 * 174.59044 * 4 2 1 6 6 C 1.36937 * 120.63318 * 126.36989 * 5 4 2 7 7 H 1.07997 * 120.00112 * 331.83021 * 6 5 4 8 8 C 1.38814 * 120.00173 * 151.82976 * 6 5 4 9 9 N 1.31619 * 119.99941 * 343.08124 * 8 6 5 10 10 Si 1.86793 * 120.00039 * 163.08132 * 8 6 5 11 11 H 1.48502 * 109.47443 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47372 * 120.00029 * 10 8 6 13 13 H 1.48501 * 109.47092 * 240.00031 * 10 8 6 14 14 C 1.46928 * 118.73559 * 306.38424 * 5 4 2 15 15 C 1.53169 * 108.76800 * 53.61685 * 14 5 4 16 16 C 1.53039 * 109.32553 * 305.35462 * 15 14 5 17 17 H 1.08999 * 109.46059 * 181.38800 * 16 15 14 18 18 N 1.46506 * 109.45810 * 301.35629 * 16 15 14 19 19 C 1.34768 * 120.00193 * 275.03258 * 18 16 15 20 20 O 1.21568 * 119.99827 * 359.97438 * 19 18 16 21 21 C 1.47789 * 120.00201 * 179.97438 * 19 18 16 22 22 C 1.39619 * 120.11925 * 359.97438 * 21 19 18 23 23 C 1.37894 * 119.91430 * 180.02562 * 22 21 19 24 24 C 1.38479 * 120.16196 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 119.87890 * 180.02562 * 24 23 22 26 26 C 1.38695 * 120.24396 * 0.02562 * 24 23 22 27 27 F 1.35104 * 119.96101 * 179.97438 * 26 24 23 28 28 C 1.38135 * 120.07912 * 359.97438 * 26 24 23 29 29 H 1.09000 * 109.47091 * 180.08437 * 1 2 3 30 30 H 1.09004 * 109.46996 * 300.08098 * 1 2 3 31 31 H 1.08995 * 109.47277 * 60.08472 * 1 2 3 32 32 H 1.08998 * 109.58275 * 294.37259 * 4 2 1 33 33 H 1.08990 * 109.58869 * 54.79790 * 4 2 1 34 34 H 0.96994 * 120.00476 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.58434 * 173.40082 * 14 5 4 36 36 H 1.08993 * 109.58896 * 293.82472 * 14 5 4 37 37 H 1.08997 * 109.48203 * 185.40233 * 15 14 5 38 38 H 1.09002 * 109.49881 * 65.31058 * 15 14 5 39 39 H 0.97001 * 119.99539 * 95.02888 * 18 16 15 40 40 H 1.07997 * 120.04715 * 359.97438 * 22 21 19 41 41 H 1.08007 * 119.92352 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.07638 * 180.27318 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2936 -0.3783 2.1941 7 1 3.9500 0.4272 2.8261 8 6 5.5351 -0.9567 2.4202 9 7 5.8212 -2.1281 1.8926 10 14 6.7995 -0.0727 3.4732 11 1 6.2362 1.2182 3.9442 12 1 7.1471 -0.9179 4.6436 13 1 8.0207 0.1850 2.6686 14 6 4.1052 -1.4267 -0.0307 15 6 3.5708 -0.6951 -1.2657 16 6 2.0408 -0.7231 -1.2483 17 1 1.6583 -0.2245 -2.1389 18 7 1.5783 -2.1131 -1.2307 19 6 1.4497 -2.7952 -2.3859 20 8 1.7170 -2.2569 -3.4426 21 6 0.9837 -4.1976 -2.3681 22 6 0.6765 -4.8185 -1.1558 23 6 0.2426 -6.1273 -1.1441 24 6 0.1103 -6.8272 -2.3316 25 17 -0.4372 -8.4744 -2.3084 26 6 0.4136 -6.2170 -3.5396 27 9 0.2830 -6.9053 -4.6948 28 6 0.8491 -4.9063 -3.5631 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5125 -0.8907 32 1 1.7637 -0.1578 2.1388 33 1 1.6052 -1.7215 1.2981 34 1 6.6885 -2.5325 2.0509 35 1 5.1896 -1.3246 0.0138 36 1 3.8375 -2.4817 -0.0866 37 1 3.9336 -1.1898 -2.1666 38 1 3.9158 0.3389 -1.2537 39 1 1.3647 -2.5425 -0.3875 40 1 0.7794 -4.2747 -0.2284 41 1 0.0053 -6.6079 -0.2064 42 1 1.0811 -4.4297 -4.5041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942958147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -58.261482 kcal Electronic energy + Delta-G solvation = -27518.485702 eV Core-core repulsion = 23438.579706 eV Total energy + Delta-G solvation = -4079.905996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.13684 -41.62341 -40.03294 -38.87943 -37.62728 -36.02062 -34.13758 -32.89298 -32.46842 -32.07518 -31.05284 -27.36765 -27.11836 -25.37251 -24.08030 -23.67130 -22.74662 -21.89912 -20.15353 -19.64310 -18.64549 -17.95538 -17.68256 -17.29582 -16.99331 -16.84787 -16.56557 -16.19181 -15.67351 -15.42126 -15.24144 -15.13486 -14.76450 -14.62091 -14.56966 -14.23683 -14.06307 -13.58479 -13.46249 -13.13659 -12.96130 -12.93417 -12.68548 -12.61328 -12.51998 -12.35414 -12.13924 -12.07463 -11.93674 -11.64355 -11.46474 -11.16183 -11.04803 -10.51511 -10.26057 -10.10285 -9.86409 -8.63249 -7.84864 -5.29348 -0.65675 -0.11242 0.79297 1.46791 1.50757 1.54972 1.59142 2.03242 2.48900 2.52980 2.87563 3.30909 3.43739 3.50453 3.70908 3.78171 3.82933 3.90410 4.09280 4.15160 4.31055 4.43149 4.54282 4.63728 4.68453 4.75225 4.79361 4.81497 4.85874 4.94998 5.02032 5.04831 5.12597 5.20892 5.34867 5.39090 5.45923 5.52185 5.58374 5.68185 5.77055 6.41662 6.48190 7.11522 7.17807 7.89503 8.39791 9.20722 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002954 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.129649 B = 9477.133244 C =10305.707871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.149 3.851 5 N -0.607 5.607 6 C -0.257 4.257 7 H 0.068 0.932 8 C -0.047 4.047 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.296 1.296 14 C 0.187 3.813 15 C -0.145 4.145 16 C 0.167 3.833 17 H 0.080 0.920 18 N -0.694 5.694 19 C 0.557 3.443 20 O -0.572 6.572 21 C -0.106 4.106 22 C -0.073 4.073 23 C -0.077 4.077 24 C -0.055 4.055 25 Cl -0.039 7.039 26 C 0.093 3.907 27 F -0.129 7.129 28 C -0.090 4.090 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.247 0.753 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.408 0.592 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -6.730 -6.100 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.096 0.904 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.387 4.387 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.577 5.577 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.220 1.220 13 H -0.223 1.223 14 C 0.061 3.939 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.098 0.902 18 N -0.346 5.346 19 C 0.345 3.655 20 O -0.453 6.453 21 C -0.110 4.110 22 C -0.091 4.091 23 C -0.095 4.095 24 C -0.083 4.083 25 Cl -0.010 7.010 26 C 0.073 3.927 27 F -0.108 7.108 28 C -0.110 4.110 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.180 0.820 41 H 0.198 0.802 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.468 -6.572 -6.818 18.137 hybrid contribution 1.206 -0.244 0.455 1.312 sum -14.262 -6.816 -6.363 17.040 Atomic orbital electron populations 1.21710 0.92627 1.02469 1.02439 1.21814 0.96954 0.99752 0.94229 0.90423 1.21106 0.83310 0.97191 0.96060 1.44265 1.01129 1.71541 1.16070 1.19505 0.99027 1.11545 1.08658 0.91442 1.25690 1.01673 0.96029 1.00902 1.70160 1.22057 1.15845 1.49652 0.85336 0.79321 0.78546 0.78008 1.19072 1.22044 1.22342 1.20406 0.97082 0.92651 0.83747 1.22412 0.96425 1.01128 0.98547 1.20820 0.92910 0.81037 0.98966 0.90163 1.45934 1.65875 1.14022 1.08736 1.18297 0.77359 0.85986 0.83898 1.90754 1.52282 1.70549 1.31715 1.19818 1.02969 0.93894 0.94293 1.21616 0.95200 0.94701 0.97633 1.21246 0.97349 0.93379 0.97509 1.21384 1.04136 0.88650 0.94143 1.98407 1.87648 1.16101 1.98827 1.17248 1.03770 0.90538 0.81161 1.91544 1.93602 1.78896 1.46744 1.21160 0.97987 0.91715 1.00167 0.92026 0.91310 0.92195 0.92226 0.95493 0.94348 0.93680 0.97690 0.93378 0.91954 0.75337 0.82042 0.80203 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.05 71.98 0.65 -2.11 16 2 C -0.11 -2.99 2.67 -10.72 -0.03 -3.02 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.15 5.11 5.50 86.36 0.48 5.58 16 5 N -0.61 -27.57 2.99 -699.15 -2.09 -29.66 16 6 C -0.26 -13.24 9.58 84.03 0.81 -12.43 16 7 H 0.07 3.39 7.88 -2.91 -0.02 3.37 16 8 C -0.05 -2.53 4.92 84.86 0.42 -2.11 16 9 N -0.93 -52.99 11.20 21.65 0.24 -52.74 16 10 Si 0.96 43.53 29.59 68.60 2.03 45.56 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.19 8.52 5.05 86.35 0.44 8.96 16 15 C -0.14 -5.47 5.77 30.66 0.18 -5.29 16 16 C 0.17 5.11 2.21 45.02 0.10 5.21 16 17 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.69 -19.11 3.55 -445.32 -1.58 -20.69 16 19 C 0.56 16.26 7.74 86.77 0.67 16.94 16 20 O -0.57 -20.52 16.01 -3.93 -0.06 -20.58 16 21 C -0.11 -2.51 5.87 -20.09 -0.12 -2.63 16 22 C -0.07 -1.31 9.54 22.52 0.21 -1.09 16 23 C -0.08 -1.20 9.81 22.25 0.22 -0.98 16 24 C -0.06 -1.05 6.33 22.44 0.14 -0.90 16 25 Cl -0.04 -0.69 28.60 -2.72 -0.08 -0.77 16 26 C 0.09 2.04 7.27 22.35 0.16 2.20 16 27 F -0.13 -3.00 16.83 44.97 0.76 -2.25 16 28 C -0.09 -2.13 9.57 22.57 0.22 -1.91 16 29 H 0.06 1.14 7.54 -2.39 -0.02 1.13 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.06 2.03 7.93 -2.39 -0.02 2.02 16 33 H 0.03 0.86 6.64 -2.39 -0.02 0.85 16 34 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.04 2.43 6.06 -2.38 -0.01 2.41 16 36 H 0.01 0.24 7.74 -2.39 -0.02 0.22 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.41 9.97 4.76 -92.71 -0.44 9.53 16 40 H 0.16 2.36 6.40 -2.91 -0.02 2.34 16 41 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.15 3.68 7.65 -2.91 -0.02 3.66 16 Total: -1.00 -63.87 358.20 4.38 -59.50 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.62 Total: 15.25 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.54 Total: 6.39 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -3.43 Total: -103.10 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.06 Total: -20.58 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.76 Total: -2.25 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -63.87 4.38 -59.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942958147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.235 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds