Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52595 * 2 1 4 4 C 1.53185 * 109.49754 * 120.08589 * 2 1 3 5 5 N 1.46929 * 108.77719 * 174.58298 * 4 2 1 6 6 C 1.36942 * 120.63308 * 126.40646 * 5 4 2 7 7 H 1.07993 * 120.00032 * 207.66666 * 6 5 4 8 8 C 1.38809 * 119.99562 * 27.67059 * 6 5 4 9 9 N 1.31617 * 120.00375 * 17.36592 * 8 6 5 10 10 Si 1.86794 * 120.00011 * 197.36292 * 8 6 5 11 11 H 1.48504 * 109.47194 * 90.00168 * 10 8 6 12 12 H 1.48500 * 109.47521 * 210.00155 * 10 8 6 13 13 H 1.48498 * 109.47275 * 330.00197 * 10 8 6 14 14 C 1.46931 * 118.73806 * 306.39510 * 5 4 2 15 15 C 1.53194 * 108.77690 * 53.60272 * 14 5 4 16 16 C 1.53041 * 109.31100 * 305.36771 * 15 14 5 17 17 H 1.08995 * 109.46049 * 301.35630 * 16 15 14 18 18 N 1.46506 * 109.45639 * 181.38674 * 16 15 14 19 19 C 1.34772 * 119.99766 * 85.00057 * 18 16 15 20 20 O 1.21561 * 120.00708 * 359.97438 * 19 18 16 21 21 C 1.47779 * 119.99893 * 179.97438 * 19 18 16 22 22 C 1.39616 * 120.14155 * 0.02562 * 21 19 18 23 23 C 1.38119 * 119.84103 * 180.02562 * 22 21 19 24 24 F 1.35100 * 119.93863 * 179.97438 * 23 22 21 25 25 C 1.38628 * 120.12461 * 0.02562 * 23 22 21 26 26 C 1.38233 * 120.29427 * 359.97438 * 25 23 22 27 27 C 1.38157 * 120.16209 * 359.97438 * 26 25 23 28 28 Cl 1.73601 * 120.06648 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.47264 * 180.08290 * 1 2 3 30 30 H 1.09000 * 109.46961 * 300.07798 * 1 2 3 31 31 H 1.08997 * 109.47420 * 60.07889 * 1 2 3 32 32 H 1.09006 * 109.59154 * 54.79878 * 4 2 1 33 33 H 1.08998 * 109.59091 * 294.36787 * 4 2 1 34 34 H 0.97000 * 120.00364 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.58131 * 293.81438 * 14 5 4 36 36 H 1.08995 * 109.58453 * 173.39264 * 14 5 4 37 37 H 1.08997 * 109.49467 * 185.41421 * 15 14 5 38 38 H 1.09000 * 109.49409 * 65.31899 * 15 14 5 39 39 H 0.96999 * 119.99637 * 264.99453 * 18 16 15 40 40 H 1.07999 * 120.07701 * 359.74615 * 22 21 19 41 41 H 1.08003 * 119.84620 * 179.97438 * 25 23 22 42 42 H 1.08003 * 119.92226 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2937 -0.3795 2.1943 7 1 5.2990 -0.0403 1.9929 8 6 3.8013 -0.3596 3.4920 9 7 2.7377 -1.0696 3.8033 10 14 4.6481 0.6749 4.7965 11 1 4.0517 2.0348 4.8142 12 1 4.4690 0.0386 6.1263 13 1 6.0970 0.7738 4.4863 14 6 4.1052 -1.4268 -0.0310 15 6 3.5708 -0.6950 -1.2662 16 6 2.0407 -0.7231 -1.2484 17 1 1.6966 -1.7572 -1.2352 18 7 1.5264 -0.0528 -2.4454 19 6 1.3970 -0.7385 -3.5984 20 8 1.7074 -1.9128 -3.6455 21 6 0.8777 -0.0626 -4.8056 22 6 0.5208 1.2862 -4.7551 23 6 0.0356 1.9116 -5.8870 24 9 -0.3109 3.2166 -5.8403 25 6 -0.0975 1.2025 -7.0708 26 6 0.2542 -0.1332 -7.1268 27 6 0.7418 -0.7704 -6.0021 28 17 1.1835 -2.4477 -6.0755 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8906 32 1 1.6052 -1.7218 1.2979 33 1 1.7639 -0.1581 2.1388 34 1 2.3934 -1.0555 4.7100 35 1 3.8375 -2.4819 -0.0870 36 1 5.1895 -1.3247 0.0135 37 1 3.9333 -1.1896 -2.1673 38 1 3.9159 0.3388 -1.2542 39 1 1.2790 0.8843 -2.4079 40 1 0.6195 1.8380 -3.8321 41 1 -0.4778 1.6958 -7.9531 42 1 0.1485 -0.6798 -8.0523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942959943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -36.558765 kcal Electronic energy + Delta-G solvation = -27297.718407 eV Core-core repulsion = 23218.753512 eV Total energy + Delta-G solvation = -4078.964895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.36013 -40.45893 -38.86154 -37.45699 -36.56017 -34.59757 -32.77364 -31.87903 -31.55706 -30.62868 -29.31381 -25.99611 -25.47857 -24.28911 -23.13693 -22.11802 -20.90755 -20.50650 -19.56808 -18.34574 -17.21046 -16.97936 -16.82168 -16.13299 -16.10303 -15.69423 -14.98210 -14.81771 -14.71903 -13.98039 -13.89259 -13.82765 -13.67159 -13.34468 -13.07805 -12.88281 -12.84072 -12.53994 -12.12141 -11.99724 -11.53092 -11.50592 -11.40458 -11.24539 -11.08491 -10.76182 -10.64871 -10.37471 -10.18617 -10.01478 -9.82154 -9.72382 -9.63868 -9.42252 -9.01641 -8.72766 -8.47040 -6.70837 -5.80965 -3.22971 0.20375 0.51074 1.87720 2.51192 3.11385 3.35898 3.36783 3.43985 3.45128 3.66898 4.09253 4.22244 4.48063 4.56391 4.68261 5.00694 5.13004 5.21910 5.30047 5.35514 5.43935 5.47517 5.53946 5.59221 5.65714 5.85376 6.05862 6.10403 6.12567 6.20869 6.32558 6.43021 6.48156 6.56607 6.66176 6.77746 6.89556 6.97691 7.31184 7.53994 7.64992 7.78656 8.24582 8.42773 9.19117 9.82265 10.38966 11.27738 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002784 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.628864 B =10055.266396 C =10888.582133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.158 3.842 17 H 0.085 0.915 18 N -0.713 5.713 19 C 0.548 3.452 20 O -0.509 6.509 21 C -0.094 4.094 22 C -0.112 4.112 23 C 0.097 3.903 24 F -0.132 7.132 25 C -0.122 4.122 26 C -0.092 4.092 27 C -0.001 4.001 28 Cl -0.020 7.020 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.092 0.908 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.393 0.607 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 5.178 -22.118 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 H 0.086 0.914 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.021 3.979 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.103 0.897 18 N -0.364 5.364 19 C 0.333 3.667 20 O -0.385 6.385 21 C -0.098 4.098 22 C -0.132 4.132 23 C 0.077 3.923 24 F -0.110 7.110 25 C -0.141 4.141 26 C -0.110 4.110 27 C -0.029 4.029 28 Cl 0.010 6.990 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.766 4.170 -21.936 23.640 hybrid contribution 0.173 1.242 0.680 1.426 sum -7.593 5.412 -21.256 23.211 Atomic orbital electron populations 1.21732 0.95861 1.01563 1.00578 1.22182 0.94720 1.00655 0.96815 0.91413 1.20804 0.83061 0.97097 0.93556 1.44113 1.01738 1.69374 1.16316 1.19203 0.97778 1.35416 0.85822 0.91591 1.25036 0.98569 0.99043 0.96970 1.70026 1.25657 1.40099 1.18873 0.86290 0.79200 0.80127 0.81161 1.21468 1.21773 1.20438 1.20876 0.96694 0.94306 0.86060 1.22398 0.94627 1.01392 0.99624 1.21126 0.93924 0.97281 0.82170 0.89680 1.46259 1.65521 1.14221 1.10400 1.17918 0.79234 0.86754 0.82830 1.90890 1.48713 1.14870 1.84048 1.19816 1.02216 0.93180 0.94566 1.21307 0.99240 0.93917 0.98731 1.17539 1.00852 0.79074 0.94788 1.91552 1.89720 1.32696 1.97039 1.21278 1.00945 0.94310 0.97554 1.20942 0.98246 0.93909 0.97943 1.21095 0.99659 0.88378 0.93804 1.98442 1.90388 1.11902 1.98271 0.92905 0.92535 0.93987 0.96079 0.88951 0.93592 0.96116 0.92528 0.92526 0.92306 0.77184 0.83419 0.83372 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.03 37.16 0.34 -1.76 16 2 C -0.12 -2.16 2.46 -90.50 -0.22 -2.38 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.18 4.15 4.59 -3.71 -0.02 4.13 16 5 N -0.59 -14.56 3.00 -172.32 -0.52 -15.08 16 6 C -0.25 -6.82 9.59 -15.06 -0.14 -6.96 16 7 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 10 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 15 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 16 C 0.16 2.65 1.88 -67.88 -0.13 2.52 16 17 H 0.09 1.61 7.57 -51.93 -0.39 1.22 16 18 N -0.71 -9.63 4.31 -54.73 -0.24 -9.86 16 19 C 0.55 7.79 7.73 -12.36 -0.10 7.70 16 20 O -0.51 -8.85 13.63 5.31 0.07 -8.78 16 21 C -0.09 -1.06 5.88 -104.95 -0.62 -1.68 16 22 C -0.11 -1.03 9.52 -39.11 -0.37 -1.40 16 23 C 0.10 0.82 7.29 -39.48 -0.29 0.53 16 24 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 25 C -0.12 -0.83 10.02 -39.44 -0.40 -1.22 16 26 C -0.09 -0.69 9.81 -39.61 -0.39 -1.08 16 27 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 28 Cl -0.02 -0.24 26.02 -51.86 -1.35 -1.59 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.53 7.36 -51.93 -0.38 0.14 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 34 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.39 4.30 6.34 -40.82 -0.26 4.04 16 40 H 0.15 1.11 6.40 -52.49 -0.34 0.77 16 41 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 42 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -30.58 358.48 -9.29 -39.87 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.45 Total: 1.37 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.84 Total: -1.43 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.13 Total: -50.05 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.35 Total: -1.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.58 -9.29 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942959943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds