Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49949 * 2 1 4 4 C 1.53193 * 109.49437 * 120.05975 * 2 1 3 5 5 N 1.46932 * 108.77563 * 174.58603 * 4 2 1 6 6 C 1.36931 * 120.63273 * 126.37277 * 5 4 2 7 7 H 1.07997 * 119.99836 * 207.69172 * 6 5 4 8 8 C 1.38814 * 120.00018 * 27.68769 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.36294 * 8 6 5 10 10 Si 1.86793 * 120.00044 * 197.36386 * 8 6 5 11 11 H 1.48499 * 109.47482 * 59.99956 * 10 8 6 12 12 H 1.48497 * 109.47288 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47539 * 300.00126 * 10 8 6 14 14 C 1.46931 * 118.73674 * 306.39154 * 5 4 2 15 15 C 1.53195 * 108.77090 * 53.60944 * 14 5 4 16 16 C 1.53031 * 109.49662 * 239.93085 * 2 1 3 17 17 H 1.09000 * 109.46415 * 58.66962 * 16 2 1 18 18 N 1.46499 * 109.46423 * 298.70212 * 16 2 1 19 19 C 1.34783 * 120.00209 * 154.99590 * 18 16 2 20 20 O 1.21554 * 119.99636 * 0.02562 * 19 18 16 21 21 C 1.47777 * 119.99931 * 180.02562 * 19 18 16 22 22 C 1.39605 * 120.14468 * 359.73261 * 21 19 18 23 23 C 1.38122 * 119.83909 * 179.74536 * 22 21 19 24 24 F 1.35099 * 119.93669 * 180.22949 * 23 22 21 25 25 C 1.38624 * 120.12651 * 0.50403 * 23 22 21 26 26 C 1.38237 * 120.29336 * 359.76655 * 25 23 22 27 27 C 1.38157 * 120.16222 * 359.97438 * 26 25 23 28 28 Cl 1.73592 * 120.07053 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46857 * 300.00214 * 1 2 3 30 30 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46945 * 60.00186 * 1 2 3 32 32 H 1.09002 * 109.59132 * 294.37282 * 4 2 1 33 33 H 1.09007 * 109.58913 * 54.66183 * 4 2 1 34 34 H 0.97000 * 120.00280 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.58394 * 173.38918 * 14 5 4 36 36 H 1.09000 * 109.58664 * 293.68125 * 14 5 4 37 37 H 1.08997 * 109.50231 * 65.31861 * 15 14 5 38 38 H 1.09004 * 109.49474 * 185.38039 * 15 14 5 39 39 H 0.97005 * 120.00187 * 335.00504 * 18 16 2 40 40 H 1.08008 * 120.08006 * 359.97438 * 22 21 19 41 41 H 1.08002 * 119.85200 * 179.74742 * 25 23 22 42 42 H 1.07997 * 119.92291 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8288 1.1700 6 6 4.2936 -0.3779 2.1943 7 1 5.2987 -0.0384 1.9925 8 6 3.8013 -0.3570 3.4921 9 7 2.7380 -1.0670 3.8041 10 14 4.6481 0.6789 4.7956 11 1 4.6312 2.1052 4.3826 12 1 3.9325 0.5299 6.0882 13 1 6.0536 0.2256 4.9523 14 6 4.1053 -1.4268 -0.0302 15 6 3.5709 -0.6955 -1.2656 16 6 2.0408 -0.7228 -1.2484 17 1 1.6582 -0.2240 -2.1389 18 7 1.5784 -2.1128 -1.2312 19 6 1.4502 -2.7947 -2.3867 20 8 1.7187 -2.2565 -3.4430 21 6 0.9832 -4.1967 -2.3693 22 6 0.6793 -4.8194 -1.1574 23 6 0.2383 -6.1283 -1.1489 24 9 -0.0607 -6.7314 0.0224 25 6 0.1074 -6.8262 -2.3395 26 6 0.4122 -6.2166 -3.5422 27 6 0.8492 -4.9061 -3.5651 28 17 1.2306 -4.1428 -5.0768 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.7637 -0.1572 2.1390 33 1 1.6033 -1.7203 1.3000 34 1 2.3942 -1.0528 4.7110 35 1 5.1895 -1.3246 0.0143 36 1 3.8395 -2.4825 -0.0844 37 1 3.9160 0.3384 -1.2541 38 1 3.9339 -1.1901 -2.1666 39 1 1.3643 -2.5424 -0.3882 40 1 0.7853 -4.2779 -0.2289 41 1 -0.2339 -7.8508 -2.3274 42 1 0.3084 -6.7660 -4.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942959945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -34.721665 kcal Electronic energy + Delta-G solvation = -27942.414445 eV Core-core repulsion = 23863.529213 eV Total energy + Delta-G solvation = -4078.885232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.15709 -40.40393 -38.87486 -37.40503 -36.45449 -34.28519 -32.68450 -31.91746 -31.32951 -30.47632 -29.45147 -26.00661 -25.42858 -24.38200 -23.02885 -22.08477 -21.10136 -20.68394 -18.71860 -18.44518 -17.01488 -16.83506 -16.77478 -16.13698 -15.92071 -15.25947 -14.93884 -14.79766 -14.61598 -13.99001 -13.88923 -13.68279 -13.61713 -13.32146 -13.19663 -12.88873 -12.72908 -12.61680 -12.06040 -11.86301 -11.49320 -11.40525 -11.31279 -11.21471 -11.03749 -10.91089 -10.71321 -10.42868 -10.17910 -9.99849 -9.80239 -9.57041 -9.46722 -9.44296 -8.87833 -8.65311 -8.49426 -6.72884 -5.84710 -3.26240 0.35112 0.67374 1.97953 2.65103 3.26664 3.35849 3.41759 3.43289 3.49683 3.84676 4.25777 4.39508 4.45891 4.72227 4.84511 5.14399 5.25835 5.28081 5.32566 5.40470 5.52625 5.53689 5.62063 5.64779 5.73530 5.81891 6.04687 6.11768 6.16633 6.28318 6.31881 6.42613 6.50516 6.52241 6.61419 6.75687 6.88895 6.96298 7.23304 7.53541 7.72405 7.76207 8.36676 8.39257 9.15625 9.78813 10.35009 11.23834 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.003507 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.261712 B = 7982.969529 C = 9026.058493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 H 0.080 0.920 4 C 0.178 3.822 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.145 4.145 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.703 5.703 19 C 0.550 3.450 20 O -0.519 6.519 21 C -0.093 4.093 22 C -0.109 4.109 23 C 0.100 3.900 24 F -0.130 7.130 25 C -0.122 4.122 26 C -0.094 4.094 27 C -0.001 4.001 28 Cl -0.024 7.024 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.013 0.987 34 H 0.254 0.746 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.401 0.599 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -9.243 -13.385 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.185 4.185 16 C 0.058 3.942 17 H 0.094 0.906 18 N -0.355 5.355 19 C 0.335 3.665 20 O -0.396 6.396 21 C -0.098 4.098 22 C -0.129 4.129 23 C 0.080 3.920 24 F -0.108 7.108 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.030 4.030 28 Cl 0.005 6.995 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.239 0.761 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.514 -8.792 -14.032 18.184 hybrid contribution 0.272 0.133 1.372 1.405 sum -7.242 -8.659 -12.660 16.962 Atomic orbital electron populations 1.21724 0.95831 1.01175 1.00977 1.22147 0.94765 1.00870 0.97139 0.90200 1.20786 0.83220 0.96443 0.94341 1.44047 1.01572 1.69478 1.16275 1.19149 0.97767 1.35537 0.85825 0.91701 1.25000 0.98517 0.99005 0.96920 1.69996 1.25670 1.40192 1.18922 0.86377 0.78951 0.80596 0.80891 1.21032 1.21646 1.20906 1.20863 0.96592 0.94035 0.86417 1.22382 0.94929 1.01802 0.99428 1.20940 0.94402 0.80145 0.98743 0.90585 1.46124 1.66433 1.14522 1.08455 1.17889 0.78835 0.85042 0.84729 1.90846 1.49714 1.69151 1.29901 1.19771 1.02544 0.95686 0.91751 1.21404 0.98800 0.93899 0.98790 1.17551 1.01108 0.91530 0.81804 1.91564 1.90692 1.83094 1.45464 1.21268 1.01077 1.01239 0.90563 1.20902 0.98847 0.92682 0.98800 1.21044 1.00288 0.93359 0.88260 1.98424 1.91932 1.81204 1.27900 0.92548 0.93297 0.93593 0.89031 0.96898 0.93565 0.92893 0.96618 0.91328 0.92418 0.76117 0.83165 0.83414 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 37.16 0.34 -1.74 16 2 C -0.13 -2.24 2.67 -90.50 -0.24 -2.48 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.18 3.85 4.30 -3.71 -0.02 3.83 16 5 N -0.59 -13.95 2.99 -172.31 -0.52 -14.46 16 6 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 9 N -0.90 -24.98 11.19 55.49 0.62 -24.36 16 10 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.15 3.01 6.26 -3.71 -0.02 2.98 16 15 C -0.15 -2.57 5.77 -26.61 -0.15 -2.72 16 16 C 0.16 2.68 2.22 -67.89 -0.15 2.53 16 17 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.70 -10.87 3.55 -54.73 -0.19 -11.07 16 19 C 0.55 8.50 7.73 -12.36 -0.10 8.41 16 20 O -0.52 -9.13 13.63 5.32 0.07 -9.06 16 21 C -0.09 -1.23 5.88 -104.95 -0.62 -1.84 16 22 C -0.11 -1.30 9.52 -39.11 -0.37 -1.67 16 23 C 0.10 1.08 7.29 -39.48 -0.29 0.79 16 24 F -0.13 -1.52 17.26 2.25 0.04 -1.48 16 25 C -0.12 -1.04 10.02 -39.44 -0.40 -1.44 16 26 C -0.09 -0.83 9.81 -39.61 -0.39 -1.22 16 27 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 28 Cl -0.02 -0.31 26.02 -51.86 -1.35 -1.66 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.28 6.03 -51.93 -0.31 1.96 16 33 H 0.01 0.29 6.65 -51.93 -0.35 -0.06 16 34 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 6.12 4.77 -40.82 -0.19 5.93 16 40 H 0.15 1.77 6.41 -52.48 -0.34 1.43 16 41 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -29.16 354.56 -9.19 -38.36 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.30 Total: 3.93 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.88 Total: -1.65 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.09 Total: -49.89 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.16 -9.19 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942959945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.634 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds